| Disease | Protein | BMRB entry | Allen Brain Atlas |
| Alzheimer's disease | Amyloid beta peptides (A beta) | 2024 5057 5400 6257 6236 | Gene Symbol APPBP2 |
| Apolipoprotein E (APOE) | 15744 | Gene Symbol APPBP2 | |
| S100 Calcium Binding Protein B | 5206 | Gene Symbol S100B | |
| Amyotrophic Lateral Sclerosis (ALS)/Lou Gehrig's disease | apo-SOD1 | 15711 | Gene Symbol SOD1 |
| apo-SOD1-variant A4V | 15712 | ||
| apo-SOD1-variant G85R | 15713 | ||
| apo-SOD1-variant D90A | 15714 | ||
| Deafness | Human COCH-5B2 Protein | 5047 | Gene Symbol COCH |
| Friedreich ataxia | Frataxin | 4342 | Gene Symbol FXN |
| Lyme disease | Outer surface protein C (OspC) from Borrelia burgdorferi | 4323 | |
| Outer surface protein A (OspA) from Borrelia burgdorferi | 4076 | ||
| Menkes syndrome | ATPase Cu(II) transporting alpha polypeptide (ATP7A) | 6130 6480 6481 6482 6483 7068 7069 | Gene Symbol ATP7A |
| Parkinson's disease | Parkin | 5496 5500 | Gene Symbol PARK2 |
| Poliovirus | Poliovirus 3A Protein | 5753 | Gene Symbol PVRL3 |
| Viral Genome Linked Protein (VPg) | 6898 | ||
| Toxoplasmosis | Microneme protein 6 | 15682 15685 | |
| Transmissible Spongiform Encephalopathies (TSEs)/Prion diseases | Syrian Hamster Prion Protein (PrP) | 4307 17034 | |
| Human Prion Peptide (PrP) | 4402 16743 16757 | Gene Symbol PRNP | |
| Sheep Prion Peptide (PrP) | 4650 | ||
| Mouse Prion Peptide (PrP) | 5197 16071 16075 16076 16077 16078 16079 16080 16184 16185 16720 16722 16723 17081 17082 17084 17087 17174 17213 | Gene Symbol Prnp | |
| Chicken Prion Protein (PrP) | 6269 | ||
| Turtle Prion Protein (PrP) | 6282 | ||
| Feline Prion Protein (PrP) | 6377 | ||
| Canine Prion Protein (PrP) | 6378 | ||
| Pig Prion Protein (PrP) | 6380 | ||
| Sheep Prion Protein (PrP) | 6381 16706 | ||
| Elk and Mouse/Elk Variant Prion Proteins (PrP) | 6383 | ||
| Rabbit Prion Protein (PrP) | 6953 16616 | ||
| Bank Vole Prion Protein (PrP) | 15824 | ||
| Tammar Wallaby Prion Protein (PrP) | 16183 | ||
| Mini Prion Protein (PrP) | 16706 | ||
| West Nile virus | West Nile Virus Envelope Protein Domain III | 6046 | |
| West Nile Virus NS2B_NS3 Protease | 11053 16359 | ||
| Williams syndrome | PHD zinc finger | 4928 | Gene Symbol DPF1 |