BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 11575

Title: SOLUTION STRUCTURE OF THE SECOND PDZ DOMAIN OF HUMAN KIAA1526 PROTEIN

Deposition date: 2014-09-08 Original release date: 2014-10-15

Authors: Li, Hua; Tochio, Naoya; Koshiba, Seizo; Inoue, Makoto; Muto, Yutaka; Kigawa, Takanori; Yokoyama, Shigeyuki

Citation: Li, Hua; Tochio, Naoya; Koshiba, Seizo; Inoue, Makoto; Muto, Yutaka; Kigawa, Takanori; Yokoyama, Shigeyuki. "SOLUTION STRUCTURE OF THE SECOND PDZ DOMAIN OF HUMAN KIAA1526 PROTEIN"  Not known ., .-..

Assembly members:
PDZ_domain, polymer, 128 residues, Formula weight is not available

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: recombinant technology   Host organism: E. coli - cell free

Entity Sequences (FASTA):
PDZ_domain: GSSGSSGDRRSTLHLLQGGD EKKVNLVLGDGRSLGLTIRG GAEYGLGIYITGVDPGSEAE GSGLKVGDQILEVNGRSFLN ILHDEAVRLLKSSRHLILTV KDVGRLPHARTTVDETKWIA SSSGPSSG

Data sets:
Data typeCount
1H chemical shifts803
13C chemical shifts516
15N chemical shifts121

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1PDZ domain1

Entities:

Entity 1, PDZ domain 128 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYASPARGARG
2   SERTHRLEUHISLEULEUGLNGLYGLYASP
3   GLULYSLYSVALASNLEUVALLEUGLYASP
4   GLYARGSERLEUGLYLEUTHRILEARGGLY
5   GLYALAGLUTYRGLYLEUGLYILETYRILE
6   THRGLYVALASPPROGLYSERGLUALAGLU
7   GLYSERGLYLEULYSVALGLYASPGLNILE
8   LEUGLUVALASNGLYARGSERPHELEUASN
9   ILELEUHISASPGLUALAVALARGLEULEU
10   LYSSERSERARGHISLEUILELEUTHRVAL
11   LYSASPVALGLYARGLEUPROHISALAARG
12   THRTHRVALASPGLUTHRLYSTRPILEALA
13   SERSERSERGLYPROSERSERGLY

Samples:

sample_1: PDZ domain, [U-13C; U-15N], 1.6 mM; TRIS, [U-2H], 20 mM; sodium chloride 100 mM; DTT, [U-2H], 1 mM; sodium azide 0.02%; D2O, [U-2H], 10%; H2O 90%

sample_conditions_1: temperature: 298 K; pH: 7.0; pressure: 1 atm; ionic strength: 120 mM

Experiments:

NameSampleSample stateSample conditions
3D 1H-15N NOESYsample_1isotropicsample_conditions_1
3D 1H-13C NOESYsample_1isotropicsample_conditions_1

Software:

xwinnmr, Bruker Biospin - collection

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMRView, Johnson, One Moon Scientific - data analysis

Kujira, Kobayashi, N. - data analysis

NMR spectrometers:

  • Bruker Avance 800 MHz

Related Database Links:

PDB
REF XP_005581023 XP_005581024 XP_007966494 XP_009186476 XP_011853880

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts