BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 18288

Title: 1H, 13C and 15N chemical shift assignments of Ninjurin1 ENT domain   PubMed: 22696136

Deposition date: 2012-02-21 Original release date: 2012-03-22

Authors: Jang, Sunbok; Kim, Jihun; Lee, Kiyoung; Lee, Kyuyeun

Citation: Lee, In-Gyun; Jang, Sun-Bok; Kim, Ji-Hun; Lee, Ki-Young; Lee, Kyu-Yeon; Cheong, Hae-Kap; Lee, Bong-Jin. "1H, 13C and 15N chemical shift assignments of Ninjurin1 Extracellular N-terminal Domain."  Biomol. NMR Assignments 7, 159-162 (2013).

Assembly members:
Ninjurin1, polymer, 89 residues, Formula weight is not available

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
Ninjurin1: MDSGTEEYELNGGLPPGTPG SPDASPARWGWRHGPINVNH YASKKSAAESMLDIALLMAN ASQLKAVVEQGPSFAFYVPL VLEHHHHHH

Data sets:
Data typeCount
13C chemical shifts233
15N chemical shifts73
1H chemical shifts248

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Ninjurin11

Entities:

Entity 1, Ninjurin1 89 residues - Formula weight is not available

1   METASPSERGLYTHRGLUGLUTYRGLULEU
2   ASNGLYGLYLEUPROPROGLYTHRPROGLY
3   SERPROASPALASERPROALAARGTRPGLY
4   TRPARGHISGLYPROILEASNVALASNHIS
5   TYRALASERLYSLYSSERALAALAGLUSER
6   METLEUASPILEALALEULEUMETALAASN
7   ALASERGLNLEULYSALAVALVALGLUGLN
8   GLYPROSERPHEALAPHETYRVALPROLEU
9   VALLEUGLUHISHISHISHISHISHIS

Samples:

sample_1: Ninjurin1, [U-100% 13C; U-100% 15N], 1 mM; sodium phosphate 20 mM; sodium chloride 50 mM; EDTA 1 mM; PMSF 0.1 mM; DTT 1 mM; SDS, [U-100% 13C], 200 mM

sample_conditions_1: ionic strength: 50 mM; pH: 7; pressure: 1 atm; temperature: 303 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
3D HNCAsample_1isotropicsample_conditions_1
3D HN(CO)CAsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D HCACOsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D 1H-15N TOCSYsample_1isotropicsample_conditions_1
3D HBHA(CO)NHsample_1isotropicsample_conditions_1

Software:

NMRView, Johnson, One Moon Scientific - chemical shift assignment

TALOS, Cornilescu, Delaglio and Bax - structure solution

NMRDraw, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMR spectrometers:

  • Bruker Avance 900 MHz
  • Bruker Avance 600 MHz

Related Database Links:

GB AAB17560 AAC14593 AAH00298 AAH04440 AAH19336
REF NP_004139 XP_002820014 XP_004048327 XP_004048328 XP_004048329
SP Q92982

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts