BMRB Entry 18771
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR18771
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Title: TatA oligomer PubMed: 23471988
Deposition date: 2012-10-08 Original release date: 2013-03-18
Authors: Rodriguez, Fernanda; Rouse, Sarah; Tait, Claudia; Harmer, Jeffrey; de Riso, Antonio; Timmel, Christiane; Sansom, Mark; Berks, Ben; Schnell, Jason
Citation: Rodriguez, Fernanda; Rouse, Sarah; Tait, Claudia; Harmer, Jeffrey; De Riso, Antonio; Timmel, Christiane; Sansom, Mark; Berks, Ben; Schnell, Jason. "Structural model for the protein-translocating element of the twin-arginine transport system." Proc. Natl. Acad. Sci. U.S.A. 110, E1092-E1101 (2013).
Assembly members:
TatA oligomer, polymer, 55 residues, 5181.249 Da.
Natural source: Common Name: E. coli Taxonomy ID: 562 Superkingdom: Bacteria Kingdom: not available Genus/species: Escherichia coli
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
TatA oligomer: XGGISIWQLLIIAVIVVLLF
GTKKLGSIGSDLGASIKGFK
KAMSDDEPKHHHHHH
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 31 |
| 15N chemical shifts | 45 |
| 1H chemical shifts | 136 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | TatA oligomer, 1 | 1 |
| 2 | TatA oligomer, 2 | 1 |
| 3 | TatA oligomer, 3 | 1 |
| 4 | TatA oligomer, 4 | 1 |
| 5 | TatA oligomer, 5 | 1 |
| 6 | TatA oligomer, 6 | 1 |
| 7 | TatA oligomer, 7 | 1 |
| 8 | TatA oligomer, 8 | 1 |
| 9 | TatA oligomer, 9 | 1 |
Entities:
Entity 1, TatA oligomer, 1 55 residues - 5181.249 Da.
| 1 | FME | GLY | GLY | ILE | SER | ILE | TRP | GLN | LEU | LEU | ||||
| 2 | ILE | ILE | ALA | VAL | ILE | VAL | VAL | LEU | LEU | PHE | ||||
| 3 | GLY | THR | LYS | LYS | LEU | GLY | SER | ILE | GLY | SER | ||||
| 4 | ASP | LEU | GLY | ALA | SER | ILE | LYS | GLY | PHE | LYS | ||||
| 5 | LYS | ALA | MET | SER | ASP | ASP | GLU | PRO | LYS | HIS | ||||
| 6 | HIS | HIS | HIS | HIS | HIS |
Samples:
N: TatA oligomer, [U-15N], 0.5 mM; DPC 30 mM; H2O 95%; D2O 5%
N_methyl: TatA oligomer, [U-13C; U-15N; U-2H]*, 0.5 mM; DPC, [U-2H], 30 mM; H2O 95%; D2O 5%
NC: TatA oligomer, [U-13C; U-15N], 0.5 mM; DPC, [U-2H], 30 mM; H2O 95%; D2O 5%
sample_conditions_1: ionic strength: 0.05 M; pH: 7.0; pressure: 1 atm; temperature: 303 K
sample_conditions_2: ionic strength: 0.05 M; pH: 7.0; pressure: 1 atm; temperature: 310 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-15N HMQC | N | isotropic | sample_conditions_1 |
| 3D 1H-13C NOESY aliphatic | NC | isotropic | sample_conditions_2 |
| 3D 1H-13C NOESY aromatic | N_methyl | isotropic | sample_conditions_1 |
| 3D 1H-13C NOESY aliphatic | N_methyl | isotropic | sample_conditions_1 |
Software:
X-PLOR NIH, Schwieters, Kuszewski, Tjandra and Clore - refinement
CARA, Keller and Wuthrich - chemical shift assignment
NMRDraw, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - data analysis
NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing
NMR spectrometers:
- Homebuilt Omega 950 MHz
- Homebuilt Omega 750 MHz
- Homebuilt Omega 600 MHz
- Bruker Avance 500 MHz
Related Database Links:
| BMRB | 18770 |
| PDB | |
| DBJ | BAO66494 |
| GB | AAA67633 AHO22621 AKL14156 EIQ60782 |
| REF | WP_039077060 WP_047372274 |
Download simulated HSQC data in one of the following formats:
CSV: Backbone
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SPARKY: Backbone
or all simulated shifts