BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 19207

Title: backbone NMR assignments for human apo-HDHD4

Deposition date: 2013-04-30 Original release date: 2013-05-29

Authors: Constantine, Keith; Kim, Soong-hoon

Citation: Constantine, Keith; Kim, Soong-hoon. "design, synthesis, functional and structural characterization of an inhibitor of N-acetylneuraminate-9-phosphate phosphatase: observation of extensive dynamics in an enzyme/inhibitor complex"  Not known ., .-..

Assembly members:
HDHD4, polymer, 241 residues, Formula weight is not available

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
HDHD4: MRAVFFDLDNTLIDTAGASR RGMLEVIKLLQSKYHYKEEA EIICDKVQVKLSKECFHPYN TCITDLRTSHWEEAIQETKG GAANRKLAEECYFLWKSTRL QHMTLAEDVKAMLTELRKEV RLLLLTNGDRQTQREKIEAC ACQSYFDAVVVGGEQREEKP APSIFYYCCNLLGVQPGDCV MVGDTLETDIQGGLNAGLKA TVWINKNGIVPLKSSPVPHY MVSSVLELPALLQSIDCLVP R

Data sets:
Data typeCount
13C chemical shifts610
15N chemical shifts201
1H chemical shifts201

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1HDHD41

Entities:

Entity 1, HDHD4 241 residues - Formula weight is not available

1   METARGALAVALPHEPHEASPLEUASPASN
2   THRLEUILEASPTHRALAGLYALASERARG
3   ARGGLYMETLEUGLUVALILELYSLEULEU
4   GLNSERLYSTYRHISTYRLYSGLUGLUALA
5   GLUILEILECYSASPLYSVALGLNVALLYS
6   LEUSERLYSGLUCYSPHEHISPROTYRASN
7   THRCYSILETHRASPLEUARGTHRSERHIS
8   TRPGLUGLUALAILEGLNGLUTHRLYSGLY
9   GLYALAALAASNARGLYSLEUALAGLUGLU
10   CYSTYRPHELEUTRPLYSSERTHRARGLEU
11   GLNHISMETTHRLEUALAGLUASPVALLYS
12   ALAMETLEUTHRGLULEUARGLYSGLUVAL
13   ARGLEULEULEULEUTHRASNGLYASPARG
14   GLNTHRGLNARGGLULYSILEGLUALACYS
15   ALACYSGLNSERTYRPHEASPALAVALVAL
16   VALGLYGLYGLUGLNARGGLUGLULYSPRO
17   ALAPROSERILEPHETYRTYRCYSCYSASN
18   LEULEUGLYVALGLNPROGLYASPCYSVAL
19   METVALGLYASPTHRLEUGLUTHRASPILE
20   GLNGLYGLYLEUASNALAGLYLEULYSALA
21   THRVALTRPILEASNLYSASNGLYILEVAL
22   PROLEULYSSERSERPROVALPROHISTYR
23   METVALSERSERVALLEUGLULEUPROALA
24   LEULEUGLNSERILEASPCYSLEUVALPRO
25   ARG

Samples:

sample_1: HDHD4, [U-100% 13C; U-100% 15N; U-80% 2H], 1.0 mM; H2O 93%; D2O 7%; d-TrisHCL 25 mM; NaCl 50 mM; d-DTT 1 mM; d-BME 1 mM

sample_conditions_1: ionic strength: 0.05 M; pH: 7.5; pressure: 1 atm; temperature: 293 K

Experiments:

NameSampleSample stateSample conditions
3D HNCOsample_1isotropicsample_conditions_1
3D HNCAsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D HCACOsample_1isotropicsample_conditions_1
3D HN(COCA)CBsample_1isotropicsample_conditions_1

Software:

FELIX, Accelrys Software Inc. - chemical shift assignment

NMR spectrometers:

  • Varian INOVA 600 MHz

Related Database Links:

BMRB 19209
PDB
DBJ BAG51524
GB AAH22552 ACE86671 ACE87355 ADQ31846 AIC53137
REF NP_001253086 NP_689880 XP_002747573 XP_002830094 XP_003278554
SP Q8TBE9

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts