BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 19364

Title: 1HN, 13C, and 15N Chemical Shift Assignments for Nupr1   PubMed: 24205110

Deposition date: 2013-07-15 Original release date: 2014-02-13

Authors: Aguado-Llera, David; Hamidi, Tewfik; Domenech, Rosa; Gironella, Meritxell; Velazquez-Campoy, Adrian; Neira, Jose L.; Iovanna, Juan L.

Citation: Aguado-Llera, David; Hamidi, Tewfik; Domenech, Rosa; Pantoja-Uceda, David; Gironella, Meritxell; Santoro, Jorge; Velazquez-Campoy, Adrian; Neira, Jose; Iovanna, Juan. "Deciphering the binding between Nupr1 and MSL1 and their DNA-repairing activity."  PLoS ONE 8, e78101-e78101 (2013).

Assembly members:
Nupr1, polymer, 93 residues, Formula weight is not available

Natural source:   Common Name: not available   Taxonomy ID: not available   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
Nupr1: MRGSHHHHHHGSATFPPATS APQQPPGPEDEDSSLDESDL YSLAHSYLGGGGRKGRTKRE AAANTNRPSPGGHERKLVTK LQNSERKKRGARR

Data sets:
Data typeCount
13C chemical shifts247
15N chemical shifts86
1H chemical shifts78

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Nupr11

Entities:

Entity 1, Nupr1 93 residues - Formula weight is not available

1   METARGGLYSERHISHISHISHISHISHIS
2   GLYSERALATHRPHEPROPROALATHRSER
3   ALAPROGLNGLNPROPROGLYPROGLUASP
4   GLUASPSERSERLEUASPGLUSERASPLEU
5   TYRSERLEUALAHISSERTYRLEUGLYGLY
6   GLYGLYARGLYSGLYARGTHRLYSARGGLU
7   ALAALAALAASNTHRASNARGPROSERPRO
8   GLYGLYHISGLUARGLYSLEUVALTHRLYS
9   LEUGLNASNSERGLUARGLYSLYSARGGLY
10   ALAARGARG

Samples:

sample_1: Nupr1, [U-99% 13C; U-99% 15N], 1.0 mM; acetate buffer 10 mM; H2O 90%; D2O 10%

sample_conditions_1: pH: 4.5; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D HN(CA)COsample_1isotropicsample_conditions_1
3D HNCAsample_1isotropicsample_conditions_1
3D HNCA intrasample_1isotropicsample_conditions_1
3D HNCACB intrasample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
2D CACOsample_1isotropicsample_conditions_1
2D CONsample_1isotropicsample_conditions_1
2D 1H-15N HSQC b-carbon editedsample_1isotropicsample_conditions_1
2D 1H-15N HSQC g-carbon editedsample_1isotropicsample_conditions_1
2D 1H-15N HSQC b-carbon edited intrasample_1isotropicsample_conditions_1

Software:

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

TOPSPIN v2.1, Bruker Biospin - collection, processing

NMRView v5.0.4, Johnson, One Moon Scientific - data analysis, peak picking

NMR spectrometers:

  • Bruker Avance 800 MHz

Related Database Links:

DBJ BAG35071 BAG73451
EMBL CAG46941
GB AAC05336 AAC19384 AAC19385 AAD49221 AAH02434
REF NP_036517 XP_003811192 XP_003916810 XP_003952861 XP_004057456
SP O60356

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts