BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 19729

Title: NMR STRUCTURE OF HEN EGG BETA-DEFENSIN GALLIN (CHICKEN OVO-DEFENSIN)   PubMed: 24443564

Deposition date: 2014-01-10 Original release date: 2014-01-21

Authors: Landon, C.; Meudal, H.

Citation: Herve, Virginie; Meudal, Herve; Labas, Valerie; Rehault Godbert, Sophie; Gautron, Joel; Berges, Magali; Guyot, Nicolas; Delmas, Agnes; Nys, Yves; Landon, Celine. "3D NMR structure of hen egg gallin (chicken ovo-defensin) reveals a new variation of the beta-defensin fold."  J. Biol. Chem. ., .-. (2014).

Assembly members:
GALLIN_PROTEIN, polymer, 41 residues, 4738.724 Da.

Natural source:   Common Name: chicken   Taxonomy ID: 9031   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Gallus gallus

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
GALLIN_PROTEIN: LVLKYCPKIGYCSNTCSKTQ IWATSHGCKMYCCLPASWKW K

Data sets:
Data typeCount
1H chemical shifts289

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1GALLIN PROTEIN1

Entities:

Entity 1, GALLIN PROTEIN 41 residues - 4738.724 Da.

1   LEUVALLEULYSTYRCYSPROLYSILEGLY
2   TYRCYSSERASNTHRCYSSERLYSTHRGLN
3   ILETRPALATHRSERHISGLYCYSLYSMET
4   TYRCYSCYSLEUPROALASERTRPLYSTRP
5   LYS

Samples:

sample_1: GALLIN PROTEIN 1 mM

sample_2: GALLIN PROTEIN 1 mM

sample_conditions_1: ionic strength: 0 mM; pH: 5.5; pressure: 1 atm; temperature: 293 K

Experiments:

NameSampleSample stateSample conditions
2D DQF-COSYsample_1isotropicsample_conditions_1
2D 1H-1H TOCSYsample_1isotropicsample_conditions_1
2D 1H-1H NOESYsample_1isotropicsample_conditions_1
2D DQF-COSYsample_2isotropicsample_conditions_1
2D 1H-1H TOCSYsample_2isotropicsample_conditions_1
2D 1H-1H NOESYsample_2isotropicsample_conditions_1
2D 1H-13C HSQCsample_1isotropicsample_conditions_1

Software:

ARIA1.1, LINGE, O, 1 - refinement

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - structure solution

NMRVIEW, Johnson, One Moon Scientific - structure solution

NMR spectrometers:

  • VARIAN INOVA 600 MHz

Related Database Links:

BMRB 17823
PDB
EMBL CBE70275 CBE70276 CBE70277 CBE70278 CBE70279
REF XP_429907 XP_429908 XP_429909