BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 25142

Title: Solution structure of Hox homeodomain   PubMed: 25707357

Deposition date: 2014-08-11 Original release date: 2015-09-14

Authors: Kim, Hyun-Hwi; Park, Sung Jean; Han, Jung-Hwa; Lee, Bong-Jin

Citation: Kim, Hyun-Hwi; Park, Sung Jean; Han, Jung-Hwa; Pathak, Chinar; Cheong, Hae-Kap; Lee, Bong-Jin. "Structural insight into the interaction between the Hox and HMGB1 and understanding of the HMGB1-enhancing effect of Hox-DNA binding"  Biochim. Biophys. Acta 1854, 449-459 (2015).

Assembly members:
entity, polymer, 68 residues, 8677.323 Da.

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
entity: ANWIHARSTRKKRCPYTKYQ TLELEKEFLFNMYLTRDRRY EVARVLNLTERQVKIWFQNR RMKMKKMN

Data sets:
Data typeCount
13C chemical shifts285
15N chemical shifts71
1H chemical shifts417

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Hox homeodomain1

Entities:

Entity 1, Hox homeodomain 68 residues - 8677.323 Da.

1   ALAASNTRPILEHISALAARGSERTHRARG
2   LYSLYSARGCYSPROTYRTHRLYSTYRGLN
3   THRLEUGLULEUGLULYSGLUPHELEUPHE
4   ASNMETTYRLEUTHRARGASPARGARGTYR
5   GLUVALALAARGVALLEUASNLEUTHRGLU
6   ARGGLNVALLYSILETRPPHEGLNASNARG
7   ARGMETLYSMETLYSLYSMETASN

Samples:

sample_1: MES, [U-100% 13C; U-100% 15N], 1 mM; H2O 90%; D2O 10%

sample_conditions_1: ionic strength: 0.05 M; pH: 6.5; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
3D 1H-15N NOESYsample_1isotropicsample_conditions_1
3D 1H-13C NOESYsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D HNCAsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D HCCH-TOCSYsample_1isotropicsample_conditions_1
3D 1H-15N TOCSYsample_1isotropicsample_conditions_1
3D HBHA(CO)NHsample_1isotropicsample_conditions_1

Software:

CNS, Brunger, Adams, Clore, Gros, Nilges and Read - structure solution

NMR spectrometers:

  • Bruker DRX 900 MHz
  • Bruker DRX 800 MHz

Related Database Links:

BMRB 17407
PDB
DBJ BAA86253 BAB28077 BAC37378 BAE22140 BAE26045
EMBL CAA30487 CAA33528 CAA39026 CAA42016 CAA44542
GB AAA37856 AAB04756 AAB68680 AAD15960 AAD15961
PIR C45187 D45187
REF NP_001017256 NP_001094377 NP_001132998 NP_001133005 NP_001133012
SP B5DFK3 O42502 P09633 P28356 P28357
TPG DAA30041 DAA32777

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts