BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 25182

Title: Backbone chemical shift assignment of FG-NUP (274 -399) under in-cell condition.

Deposition date: 2014-08-29 Original release date: 2015-10-08

Authors: Dutta, Kaushik; Cowburn, David; Rout, Michael

Citation: Hough, Loren; Dutta, Kaushik; Sparks, Sam; Temel, Deniz; Kamal, Alia; Tetenbaum-Novatt, Jaclyn; Rout, Michael; Cowburn, David. "Atomic Scale Dynamic Behavior of the Nuclear Transport Selectivity Barrier"  Science ., .-..

Assembly members:
FSFG-K, polymer, 125 residues, Formula weight is not available

Natural source:   Common Name: baker's yeast   Taxonomy ID: 4932   Superkingdom: Eukaryota   Kingdom: Fungi   Genus/species: Saccharomyces cerevisiae

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
FSFG-K: MDNKTTNTTPSFSFGAKSDE NKAGATSKPAFSFGAKPEEK KDDNSSKPAFSFGAKSNEDK QDGTAKPAFSFGAKPAEKNN NETSKPAFSFGAKSDEKKDG DASKPAFSFGAKPDENKASA TSKPA

Data sets:
Data typeCount
13C chemical shifts350
15N chemical shifts109
1H chemical shifts109

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1entity1

Entities:

Entity 1, entity 125 residues - Formula weight is not available

1   METASPASNLYSTHRTHRASNTHRTHRPRO
2   SERPHESERPHEGLYALALYSSERASPGLU
3   ASNLYSALAGLYALATHRSERLYSPROALA
4   PHESERPHEGLYALALYSPROGLUGLULYS
5   LYSASPASPASNSERSERLYSPROALAPHE
6   SERPHEGLYALALYSSERASNGLUASPLYS
7   GLNASPGLYTHRALALYSPROALAPHESER
8   PHEGLYALALYSPROALAGLULYSASNASN
9   ASNGLUTHRSERLYSPROALAPHESERPHE
10   GLYALALYSSERASPGLULYSLYSASPGLY
11   ASPALASERLYSPROALAPHESERPHEGLY
12   ALALYSPROASPGLUASNLYSALASERALA
13   THRSERLYSPROALA

Samples:

sample_1: FSFG-K, [U-100% 15N], 500 uM; H2O 90%; D2O 10%

sample_2: FSFG-K, [U-100% 13C; U-100% 15N], 500 uM; H2O 90%; D2O 10%

sample_conditions_1: ionic strength: 20 mM; pH: 7.3; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
3D HNCOsample_2isotropicsample_conditions_1
3D CBCA(CO)NHsample_2isotropicsample_conditions_1
3D HNCAsample_2isotropicsample_conditions_1
3D HNCACBsample_2isotropicsample_conditions_1
3D HN(CO)CAsample_2isotropicsample_conditions_1
3D HN(CA)COsample_2isotropicsample_conditions_1
3D C(CO)NHsample_2isotropicsample_conditions_1

Software:

NMRView, Johnson, One Moon Scientific - chemical shift assignment

NMR spectrometers:

  • Bruker Avance 700 MHz
  • Bruker Avance 800 MHz
  • Bruker Avance 900 MHz

Related Database Links:

BMRB 25183

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts