BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 25887

Title: Solution structure of the SLURP-2, a secreted isoform of Lynx1   PubMed: 27485575

Deposition date: 2015-11-11 Original release date: 2016-09-15

Authors: Paramonov, Alexander; Shenkarev, Zakhar; Lyukmanova, Ekaterina; Arseniev, Alexander

Citation: Lyukmanova, E.; Shulepko, M.; Shenkarev, Z.; Bychkov, M.; Paramonov, A.; Chugunov, A.; Kulbatskii, D.; Arvaniti, M.; Dolejsi, E.; Schaer, T.; Arseniev, A.; Efremov, R.; Thomsen, M.; Dolezal, V.; Bertrand, D.; Dolgikh, D.; Kirpichnikov, M.. "Secreted Isoform of Human Lynx1 (SLURP-2): Spatial Structure and Pharmacology of Interactions with Different Types of Acetylcholine Receptors"  Sci. Rep. 6, 30698-30698 (2016).

Assembly members:
SLURP-2, polymer, 76 residues, 8163.446 Da.

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
SLURP-2: MIWCHQCTGFGGCSHGSRCL RDSTHCVTTATRVLSNTEDL PLVTKMCHIGCPDIPSLGLG PYVSIACCQTSLCNHD

Data sets:
Data typeCount
13C chemical shifts300
15N chemical shifts78
1H chemical shifts488

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1SLURP-21

Entities:

Entity 1, SLURP-2 76 residues - 8163.446 Da.

Residue M100 was added due to recombinant production

1   METILETRPCYSHISGLNCYSTHRGLYPHE
2   GLYGLYCYSSERHISGLYSERARGCYSLEU
3   ARGASPSERTHRHISCYSVALTHRTHRALA
4   THRARGVALLEUSERASNTHRGLUASPLEU
5   PROLEUVALTHRLYSMETCYSHISILEGLY
6   CYSPROASPILEPROSERLEUGLYLEUGLY
7   PROTYRVALSERILEALACYSCYSGLNTHR
8   SERLEUCYSASNHISASP

Samples:

sample_1: SLURP-2, [U-99% 13C; U-99% 15N], 0.5 mM; H2O 95%; D2O 5%; dioxane-d6 5%

sample_conditions_1: ionic strength: 10 mM; pH: 5.0; pressure: 1 atm; temperature: 315 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
2D 1H-13C HSQCsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D HNCAsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D HN(CO)CAsample_1isotropicsample_conditions_1
3D HCCH-TOCSYsample_1isotropicsample_conditions_1
3D HNHAsample_1isotropicsample_conditions_1
3D 1H-15N NOESYsample_1isotropicsample_conditions_1
3D 1H-13C NOESY aliphaticsample_1isotropicsample_conditions_1
3D 1H-15N TOCSYsample_1isotropicsample_conditions_1
3D HNHBsample_1isotropicsample_conditions_1

Software:

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

TOPSPIN, Bruker Biospin - collection, processing

CARA, Keller and Wuthrich - chemical shift assignment, peak picking

CYANA, Guntert, Mumenthaler and Wuthrich - structure solution

NMR spectrometers:

  • Bruker Avance 800 MHz

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts