BMRB Entry 26066
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, SPARTA
BMRB Entry DOI: doi:10.13018/BMR26066
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Title: NMR solution structure of PawS Derived Peptide 20 (PDP-20) PubMed: 27352920
Deposition date: 2016-07-26 Original release date: 2016-09-02
Authors: Franke, Bastian; Jayasena, Achala; Fisher, Mark; Swedberg, Joakim; Taylor, Nicolas; Mylne, Joshua; Rosengren, K. Johan
Citation: Franke, Bastian; Jayasena, Achala; Fisher, Mark; Swedberg, Joakim; Taylor, Nicolas; Mylne, Joshua; Rosengren, K. Johan. "Diverse cyclic seed peptides in the Mexican zinnia (Zinnia haageana)" Biopolymers 106, 806-817 (2016).
Assembly members:
PawS_Derived_Peptide_20_(PDP-20), polymer, 16 residues, 1671.919 Da.
Natural source: Common Name: eudicots Taxonomy ID: 1525732 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Zinnia haageana
Experimental source: Production method: chemical synthesis
Entity Sequences (FASTA):
PawS_Derived_Peptide_20_(PDP-20): GICFKDPFGSTLCAPD
- assigned_chemical_shifts
Data type | Count |
13C chemical shifts | 39 |
15N chemical shifts | 13 |
1H chemical shifts | 99 |
Additional metadata:
Assembly:
Entity Assembly ID | Entity Name | Entity ID |
---|---|---|
1 | PawS Derived Peptide 20 (PDP-20) | 1 |
Entities:
Entity 1, PawS Derived Peptide 20 (PDP-20) 16 residues - 1671.919 Da.
This peptide is head-to-tail backbone cyclic. It has an amide bond between its N- and C-terminus.
1 | GLY | ILE | CYS | PHE | LYS | ASP | PRO | PHE | GLY | SER | ||||
2 | THR | LEU | CYS | ALA | PRO | ASP |
Samples:
sample_1: PawS Derived Peptide 20 (PDP-20) 1.8 mg/mL; H2O 90%; D2O 10%
sample_2: PawS Derived Peptide 20 (PDP-20) 1.8 mg/mL; D2O 100%
sample_conditions_1: pH: 4; pressure: 1 atm; temperature: 283 K
Experiments:
Name | Sample | Sample state | Sample conditions |
---|---|---|---|
2D 1H-1H TOCSY | sample_1 | isotropic | sample_conditions_1 |
2D 1H-1H NOESY | sample_1 | isotropic | sample_conditions_1 |
2D DQF-COSY | sample_1 | isotropic | sample_conditions_1 |
2D 1H-13C HSQC | sample_2 | isotropic | sample_conditions_1 |
2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
Software:
TOPSPIN, Bruker Biospin - collection, processing
CcpNMR, CCPN - data analysis, peak picking
CYANA, Guntert, Mumenthaler and Wuthrich - structure solution
NMR spectrometers:
- Bruker Avance 600 MHz
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts