BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 26066

Title: NMR solution structure of PawS Derived Peptide 20 (PDP-20)   PubMed: 27352920

Deposition date: 2016-07-26 Original release date: 2016-09-02

Authors: Franke, Bastian; Jayasena, Achala; Fisher, Mark; Swedberg, Joakim; Taylor, Nicolas; Mylne, Joshua; Rosengren, K. Johan

Citation: Franke, Bastian; Jayasena, Achala; Fisher, Mark; Swedberg, Joakim; Taylor, Nicolas; Mylne, Joshua; Rosengren, K. Johan. "Diverse cyclic seed peptides in the Mexican zinnia (Zinnia haageana)"  Biopolymers 106, 806-817 (2016).

Assembly members:
PawS_Derived_Peptide_20_(PDP-20), polymer, 16 residues, 1671.919 Da.

Natural source:   Common Name: eudicots   Taxonomy ID: 1525732   Superkingdom: Eukaryota   Kingdom: Viridiplantae   Genus/species: Zinnia haageana

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
PawS_Derived_Peptide_20_(PDP-20): GICFKDPFGSTLCAPD

Data sets:
Data typeCount
13C chemical shifts39
15N chemical shifts13
1H chemical shifts99

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1PawS Derived Peptide 20 (PDP-20)1

Entities:

Entity 1, PawS Derived Peptide 20 (PDP-20) 16 residues - 1671.919 Da.

This peptide is head-to-tail backbone cyclic. It has an amide bond between its N- and C-terminus.

1   GLYILECYSPHELYSASPPROPHEGLYSER
2   THRLEUCYSALAPROASP

Samples:

sample_1: PawS Derived Peptide 20 (PDP-20) 1.8 mg/mL; H2O 90%; D2O 10%

sample_2: PawS Derived Peptide 20 (PDP-20) 1.8 mg/mL; D2O 100%

sample_conditions_1: pH: 4; pressure: 1 atm; temperature: 283 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-1H TOCSYsample_1isotropicsample_conditions_1
2D 1H-1H NOESYsample_1isotropicsample_conditions_1
2D DQF-COSYsample_1isotropicsample_conditions_1
2D 1H-13C HSQCsample_2isotropicsample_conditions_1
2D 1H-15N HSQCsample_1isotropicsample_conditions_1

Software:

TOPSPIN, Bruker Biospin - collection, processing

CcpNMR, CCPN - data analysis, peak picking

CYANA, Guntert, Mumenthaler and Wuthrich - structure solution

NMR spectrometers:

  • Bruker Avance 600 MHz

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts