BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules 		Member of WWPDB

BMRB Entry 26800

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR26800

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Title: Resonance assignments of a VapC family toxin from Clostridium thermocellum   PubMed: 27386855

Deposition date: 2016-05-13 Original release date: 2016-08-31

Authors: Wang, Chen; Xuan, Jinsong; Cui, Qiu; Feng, Yingang

Citation: Wang, Chen; Xuan, Jinsong; Cui, Qiu; Feng, Yingang. "Resonance assignments of a VapC family toxin from Clostridium thermocellum"  Biomol. NMR Assign. 10, 367-371 (2016).

Assembly members:
CtVapC-D92A, polymer, 142 residues, Formula weight is not available

Natural source:   Common Name: firmicutes   Taxonomy ID: 1515   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Clostridium thermocellum

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
CtVapC-D92A: MRVLIDTNILISASLSCEGT PYQAYIKAVTHPNHGMVCDQ NIDELRRVYNRKFPHKIQAL ERFLAIALTVLEVVPTPAVD VSDEALVRDASARPILRAAI AAKADVLVTGDRDFLESGIT NPKIVTAAEFLQMELEHHHH HH

Data sets:
Data typeCount
13C chemical shifts625
15N chemical shifts143
1H chemical shifts1007

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1VapC family toxin1

Entities:

Entity 1, VapC family toxin 142 residues - Formula weight is not available

1   METARGVALLEUILEASPTHRASNILELEU
2   ILESERALASERLEUSERCYSGLUGLYTHR
3   PROTYRGLNALATYRILELYSALAVALTHR
4   HISPROASNHISGLYMETVALCYSASPGLN
5   ASNILEASPGLULEUARGARGVALTYRASN
6   ARGLYSPHEPROHISLYSILEGLNALALEU
7   GLUARGPHELEUALAILEALALEUTHRVAL
8   LEUGLUVALVALPROTHRPROALAVALASP
9   VALSERASPGLUALALEUVALARGASPALA
10   SERALAARGPROILELEUARGALAALAILE
11   ALAALALYSALAASPVALLEUVALTHRGLY
12   ASPARGASPPHELEUGLUSERGLYILETHR
13   ASNPROLYSILEVALTHRALAALAGLUPHE
14   LEUGLNMETGLULEUGLUHISHISHISHIS
15   HISHIS

Samples:

sample_1: CtVapC-D92A, [U-13C; U-15N], 1.0 mM; sodium phosphate 50 mM; potassium chloride 100 mM; EDTA 2 mM; DTT 10 mM; DSS 0.01 w/v; H2O 90%; D2O 10%

sample_conditions_1: ionic strength: 170 mM; pH: 5.75; pressure: 1 atm; temperature: 303 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
2D 1H-13C HSQCsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D HN(CA)COsample_1isotropicsample_conditions_1
3D HBHA(CO)NHsample_1isotropicsample_conditions_1
3D HBHANHsample_1isotropicsample_conditions_1
3D HCCH-TOCSYsample_1isotropicsample_conditions_1
3D CCH-TOCSYsample_1isotropicsample_conditions_1
3D CCH-COSYsample_1isotropicsample_conditions_1
3D 1H-15N NOESYsample_1isotropicsample_conditions_1
3D 1H-13C NOESY aliphaticsample_1isotropicsample_conditions_1
3D 1H-13C NOESY aromaticsample_1isotropicsample_conditions_1

Software:

TOPSPIN, Bruker Biospin - collection

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMRView, Johnson, One Moon Scientific - chemical shift assignment, data analysis, peak picking

NMR spectrometers:

  • Bruker Avance 600 MHz

Related Database Links:

UNP A3DFW5_CLOTH

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts