BMRB Entry 34014
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR34014
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Title: NMR structure of Chicken AvBD7 defensin PubMed: 27561012
Deposition date: 2016-06-22 Original release date: 2016-09-02
Authors: Landon, C.; Loth, K.; Meudal, H.
Citation: Bailleul, G.; Kravtzoff, A.; Joulin-Giet, A.; Lecaille, F.; Labas, V.; Meudal, H.; Loth, K.; Teixeira-Gomes, A.; Gilbert, F.; Coquet, L.; Jouenne, T.; Bromme, D.; Schouler, C.; Landon, C.; Lalmanach, G.; Lalmanach, A.. "The Unusual Resistance of Avian Defensin AvBD7 to Proteolytic Enzymes Preserves Its Antibacterial Activity." Plos One 11, e0161573-e0161573 (2016).
Assembly members:
entity_1, polymer, 47 residues, 5366.268 Da.
Natural source: Common Name: chicken Taxonomy ID: 9031 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Gallus gallus
Experimental source: Production method: chemical synthesis
Entity Sequences (FASTA):
entity_1: XPFIPRPIDTCRLRNGICFP
GICRRPYYWIGTCNNGIGSC
CARGWRS
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 136 |
| 15N chemical shifts | 43 |
| 1H chemical shifts | 323 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | entity_1 | 1 |
Entities:
Entity 1, entity_1 47 residues - 5366.268 Da.
| 1 | PCA | PRO | PHE | ILE | PRO | ARG | PRO | ILE | ASP | THR | ||||
| 2 | CYS | ARG | LEU | ARG | ASN | GLY | ILE | CYS | PHE | PRO | ||||
| 3 | GLY | ILE | CYS | ARG | ARG | PRO | TYR | TYR | TRP | ILE | ||||
| 4 | GLY | THR | CYS | ASN | ASN | GLY | ILE | GLY | SER | CYS | ||||
| 5 | CYS | ALA | ARG | GLY | TRP | ARG | SER |
Samples:
sample_1: Chicken AvBD7 0.23 mM
sample_conditions_1: ionic strength: 0 M; pH: 4.5; pressure: 1 atm; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-1H TOCSY | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-1H NOESY | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-13C HSQC | sample_1 | isotropic | sample_conditions_1 |
Software:
ARIA, Linge, O'Donoghue and Nilges - structure calculation
CNS, Brunger, Adams, Clore, Gros, Nilges and Read - refinement
CcpNMR, CCPN - chemical shift assignment, peak picking
TOPSPIN, Bruker Biospin - collection
NMR spectrometers:
- Bruker AvanceIII 950 MHz
- Bruker AvanceIII 700 MHz
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or all simulated shifts
SPARKY: Backbone
or all simulated shifts