BMRB Entry 34050
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR34050
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Title: Structure of a Spumaretrovirus Gag central domain reveals an ancient retroviral capsid PubMed: 23675305
Deposition date: 2016-10-07 Original release date: 2016-10-24
Authors: Taylor, I.; Nicastro, G.; Ball, N.
Citation: Goldstone, D.; Flower, T.; Ball, N.; Sanz-Ramos, M.; Yap, M.; Ogrodowicz, R.; Stanke, N.; Reh, J.; Lindemann, D.; Stoye, J.; Taylor, I.. "A unique spumavirus Gag N-terminal domain with functional properties of orthoretroviral matrix and capsid." PLoS Pathog. 9, e1003376-e1003376 (2013).
Assembly members:
entity_1, polymer, 180 residues, 19604.459 Da.
Natural source: Common Name: SFVcpz(hu) Taxonomy ID: 11963 Superkingdom: Viruses Kingdom: not available Genus/species: Human spumaretrovirus
Experimental source: Production method: recombinant technology Host organism: Escherichia coli BL21(DE3)
Entity Sequences (FASTA):
entity_1: PIGTVIPIQHIRSVTGEPPR
NPREIPIWLGRNAPAIDGVF
PVTTPDLRCRIINAILGGNI
GLSLTPGDCLTWDSAVATLF
IRTHGTFPMHQLGNVIKGIV
DQEGVATAYTLGMMLSGQNY
QLVSGIIRGYLPGQAVVTAL
QQRLDQEIDDQTRAETFIQH
LNAVYEILGLNARGQSIRLE
- assigned_chemical_shifts
Data type | Count |
15N chemical shifts | 183 |
1H chemical shifts | 1143 |
Additional metadata:
Assembly:
Entity Assembly ID | Entity Name | Entity ID |
---|---|---|
1 | entity_1 | 1 |
Entities:
Entity 1, entity_1 180 residues - 19604.459 Da.
1 | PRO | ILE | GLY | THR | VAL | ILE | PRO | ILE | GLN | HIS | |
2 | ILE | ARG | SER | VAL | THR | GLY | GLU | PRO | PRO | ARG | |
3 | ASN | PRO | ARG | GLU | ILE | PRO | ILE | TRP | LEU | GLY | |
4 | ARG | ASN | ALA | PRO | ALA | ILE | ASP | GLY | VAL | PHE | |
5 | PRO | VAL | THR | THR | PRO | ASP | LEU | ARG | CYS | ARG | |
6 | ILE | ILE | ASN | ALA | ILE | LEU | GLY | GLY | ASN | ILE | |
7 | GLY | LEU | SER | LEU | THR | PRO | GLY | ASP | CYS | LEU | |
8 | THR | TRP | ASP | SER | ALA | VAL | ALA | THR | LEU | PHE | |
9 | ILE | ARG | THR | HIS | GLY | THR | PHE | PRO | MET | HIS | |
10 | GLN | LEU | GLY | ASN | VAL | ILE | LYS | GLY | ILE | VAL | |
11 | ASP | GLN | GLU | GLY | VAL | ALA | THR | ALA | TYR | THR | |
12 | LEU | GLY | MET | MET | LEU | SER | GLY | GLN | ASN | TYR | |
13 | GLN | LEU | VAL | SER | GLY | ILE | ILE | ARG | GLY | TYR | |
14 | LEU | PRO | GLY | GLN | ALA | VAL | VAL | THR | ALA | LEU | |
15 | GLN | GLN | ARG | LEU | ASP | GLN | GLU | ILE | ASP | ASP | |
16 | GLN | THR | ARG | ALA | GLU | THR | PHE | ILE | GLN | HIS | |
17 | LEU | ASN | ALA | VAL | TYR | GLU | ILE | LEU | GLY | LEU | |
18 | ASN | ALA | ARG | GLY | GLN | SER | ILE | ARG | LEU | GLU |
Samples:
sample_1: entity_1, [U-13C; U-15N], 0.3 mM; NaCl 20 mM; Tris 20 mM
sample_conditions_1: ionic strength: 40 mM; pH: 7.0; pressure: 1 Pa; temperature: 298 K
Experiments:
Name | Sample | Sample state | Sample conditions |
---|---|---|---|
3D 1H-13C NOESY | sample_1 | isotropic | sample_conditions_1 |
3D 1H-15N NOESY | sample_1 | isotropic | sample_conditions_1 |
3D 1H-13C NOESY aromatic | sample_1 | isotropic | sample_conditions_1 |
Software:
ARIA, Linge, O'Donoghue and Nilges - structure calculation
CARA, Keller and Wuthrich - chemical shift assignment
NMR spectrometers:
- Bruker Avance 950 MHz
- Bruker Avance 800 MHz
- Bruker Avance 700 MHz
- Bruker Avance 6 MHz
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts