BMRB Entry 4171
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4171
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Title: Backbone and C beta Assignments of the Anti-gp120 Antibody Fv Fragment Complexed with an Antigenic Peptide
Deposition date: 1998-08-03 Original release date: 2000-03-02
Authors: Tugarinov, Vitali; Levy, Rina; Dahan-Shokoroy, Adi; Anglister, Jacob
Citation: Tugarinov, Vitali; Levy, Rina; Dahan-Shokoroy, Adi; Anglister, Jacob. "Backbone and C beta Assignments of the Anti-gp120 Antibody Fv Fragment Complexed with an Antigenic Peptide" J. Biomol. NMR 13, 193-194 (1999).
Assembly members:
light chain, polymer, 112 residues, Formula weight is not available
heavy chain, polymer, 119 residues, Formula weight is not available
Natural source: Common Name: mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
light chain: DIVLTQSPASLAVSLGQRAT
ISCKASQSVDYDGDSYMNWY
QQKPGQPPKLLIYAASNLES
GIPARFSGSGSRTDFTLNIH
PVEEEDAATYYCQQSNEDPF
TFGSGTKLEIKR
heavy chain: QVQLQQSGAELVKPGASVKM
SCKAFGYTFTTYPIEWMKQN
HGKSLEWIGNFHPYSDDTNY
NEKFKGKAKLTVEKSSSTVY
LEFSRLTSDDSAVYYCAIHY
GSAYAMDYWGQGTSVTVSS
- assigned_chemical_shifts
Data type | Count |
13C chemical shifts | 431 |
15N chemical shifts | 208 |
1H chemical shifts | 449 |
Additional metadata:
Assembly:
Entity Assembly ID | Entity Name | Entity ID |
---|---|---|
1 | FvL | 1 |
2 | FvH | 2 |
Entities:
Entity 1, FvL 112 residues - Formula weight is not available
1 | ASP | ILE | VAL | LEU | THR | GLN | SER | PRO | ALA | SER | ||||
2 | LEU | ALA | VAL | SER | LEU | GLY | GLN | ARG | ALA | THR | ||||
3 | ILE | SER | CYS | LYS | ALA | SER | GLN | SER | VAL | ASP | ||||
4 | TYR | ASP | GLY | ASP | SER | TYR | MET | ASN | TRP | TYR | ||||
5 | GLN | GLN | LYS | PRO | GLY | GLN | PRO | PRO | LYS | LEU | ||||
6 | LEU | ILE | TYR | ALA | ALA | SER | ASN | LEU | GLU | SER | ||||
7 | GLY | ILE | PRO | ALA | ARG | PHE | SER | GLY | SER | GLY | ||||
8 | SER | ARG | THR | ASP | PHE | THR | LEU | ASN | ILE | HIS | ||||
9 | PRO | VAL | GLU | GLU | GLU | ASP | ALA | ALA | THR | TYR | ||||
10 | TYR | CYS | GLN | GLN | SER | ASN | GLU | ASP | PRO | PHE | ||||
11 | THR | PHE | GLY | SER | GLY | THR | LYS | LEU | GLU | ILE | ||||
12 | LYS | ARG |
Entity 2, FvH 119 residues - Formula weight is not available
1 | GLN | VAL | GLN | LEU | GLN | GLN | SER | GLY | ALA | GLU | ||||
2 | LEU | VAL | LYS | PRO | GLY | ALA | SER | VAL | LYS | MET | ||||
3 | SER | CYS | LYS | ALA | PHE | GLY | TYR | THR | PHE | THR | ||||
4 | THR | TYR | PRO | ILE | GLU | TRP | MET | LYS | GLN | ASN | ||||
5 | HIS | GLY | LYS | SER | LEU | GLU | TRP | ILE | GLY | ASN | ||||
6 | PHE | HIS | PRO | TYR | SER | ASP | ASP | THR | ASN | TYR | ||||
7 | ASN | GLU | LYS | PHE | LYS | GLY | LYS | ALA | LYS | LEU | ||||
8 | THR | VAL | GLU | LYS | SER | SER | SER | THR | VAL | TYR | ||||
9 | LEU | GLU | PHE | SER | ARG | LEU | THR | SER | ASP | ASP | ||||
10 | SER | ALA | VAL | TYR | TYR | CYS | ALA | ILE | HIS | TYR | ||||
11 | GLY | SER | ALA | TYR | ALA | MET | ASP | TYR | TRP | GLY | ||||
12 | GLN | GLY | THR | SER | VAL | THR | VAL | SER | SER |
Samples:
sample_one: light chain, [U-95% 13C; U-95% 15N], 0.6 mM; heavy chain, [U-95% 13C; U-95% 15N], 0.6 mM
sample_conditions_one: pH: 7.2; temperature: 310 K
Experiments:
Name | Sample | Sample state | Sample conditions |
---|
Software:
No software information available
NMR spectrometers:
- Bruker DMX 600.13 MHz
- Bruker DMX 500.13 MHz
Related Database Links:
PDB | |
DBJ | BAH95819 |
EMBL | CAA75909 CAA80931 CAA80933 CAA80935 CAA80937 |
GB | AAA39088 AAA51113 AAA68538 AAA68560 AAA83114 |
PIR | S42193 |
SP | P01665 P01667 |
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts