BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 5234

Title: Backbone resonance assignment of the 2H,13C,15N labelled 32KDa Central Domain of Escherichia coli TyrR   PubMed: 12018490

Deposition date: 2001-12-17 Original release date: 2002-08-22

Authors: Swarbrick, James; Bashtannyk, Tanya; Dixon, Mathew; Pau, Richard; Davidson, Barrie; Gooley, Paul

Citation: Swarbrick, James; Bashtannyk, Tanya; Dixon, Mathew; Pau, Richard; Davidson, Barrie; Gooley, Paul. "Letter to the Editor: Backbone resonance assignment of the 2H, 13C, 15N labelled 32kDa Central Domain of Escherichia coli TyrR"  J. Biomol. NMR 22, 381-382 (2002).

Assembly members:
TyrR transcription factor central domain, polymer, 288 residues, Formula weight is not available

Natural source:   Common Name: E. coli   Taxonomy ID: 562   Superkingdom: Eubacteria   Kingdom: not available   Genus/species: Escherichia coli

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):
TyrR transcription factor central domain: MGRQLQNVAAQDVSAFSQIV AVSPKMKHVVEQAQKLAMLS APLLITGDTGTGKDLFAYAC HQASPRAGKPYLALNCASIP EDAVESELFGHAPEGKKGFF EQANGGSVLLDEIGEMSPRM QAKLLRFLNDGTFRRVGEDH EVHVDVRVICATQKNLVELV QKGMFREDLYYRLNVLTLNL PPLRDCPQDIMPLTELFVAR FADEQGVPLPKLAADLNTVL TRYAWPGNVRQLKNAIYRAL TQLDGYELRPQDILLPDYDA ATVAVGEDAMEGSLDEITSR LEHHHHHH

Data sets:
Data typeCount
13C chemical shifts672
15N chemical shifts246
1H chemical shifts247

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1TyrR central domain1

Entities:

Entity 1, TyrR central domain 288 residues - Formula weight is not available

1   METGLYARGGLNLEUGLNASNVALALAALA
2   GLNASPVALSERALAPHESERGLNILEVAL
3   ALAVALSERPROLYSMETLYSHISVALVAL
4   GLUGLNALAGLNLYSLEUALAMETLEUSER
5   ALAPROLEULEUILETHRGLYASPTHRGLY
6   THRGLYLYSASPLEUPHEALATYRALACYS
7   HISGLNALASERPROARGALAGLYLYSPRO
8   TYRLEUALALEUASNCYSALASERILEPRO
9   GLUASPALAVALGLUSERGLULEUPHEGLY
10   HISALAPROGLUGLYLYSLYSGLYPHEPHE
11   GLUGLNALAASNGLYGLYSERVALLEULEU
12   ASPGLUILEGLYGLUMETSERPROARGMET
13   GLNALALYSLEULEUARGPHELEUASNASP
14   GLYTHRPHEARGARGVALGLYGLUASPHIS
15   GLUVALHISVALASPVALARGVALILECYS
16   ALATHRGLNLYSASNLEUVALGLULEUVAL
17   GLNLYSGLYMETPHEARGGLUASPLEUTYR
18   TYRARGLEUASNVALLEUTHRLEUASNLEU
19   PROPROLEUARGASPCYSPROGLNASPILE
20   METPROLEUTHRGLULEUPHEVALALAARG
21   PHEALAASPGLUGLNGLYVALPROLEUPRO
22   LYSLEUALAALAASPLEUASNTHRVALLEU
23   THRARGTYRALATRPPROGLYASNVALARG
24   GLNLEULYSASNALAILETYRARGALALEU
25   THRGLNLEUASPGLYTYRGLULEUARGPRO
26   GLNASPILELEULEUPROASPTYRASPALA
27   ALATHRVALALAVALGLYGLUASPALAMET
28   GLUGLYSERLEUASPGLUILETHRSERARG
29   LEUGLUHISHISHISHISHISHIS

Samples:

sample_1: TyrR transcription factor central domain, [U-13C; U-2H; U-15N], 0.7 mM

Deuteration_1: pH: 7.5; temperature: 293 K

Experiments:

NameSampleSample stateSample conditions
Trosy HNCAnot availablenot availablenot available
Trosy HNCACBnot availablenot availablenot available
Trosy HN(CO)CAnot availablenot availablenot available
Trosy HN(CO)CBnot availablenot availablenot available
Trosy HN(CA)CBnot availablenot availablenot available
1H-15N NOESY_HSQCnot availablenot availablenot available

Software:

NMRPipe - processing

XEASY v1.4 - assignments

NMR spectrometers:

  • Varian INOVA 600 MHz

Related Database Links:

DBJ BAA14905 BAB35325 BAG76899 BAI25172 BAI30314
EMBL CAP75867 CAQ31828 CAQ98207 CAR02785 CAR07729
GB AAA24706 AAB25766 AAC74405 AAF28133 AAG56479
REF NP_287865 NP_309929 NP_415839 NP_707228 NP_753699
SP P07604

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts