BMRB Entry 5898
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5898
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Title: Backbone 1H, 13C and 15N resonance assignments for the 24.4 kDa human gankyrin protein PubMed: 15379554
Deposition date: 2003-08-05 Original release date: 2004-10-25
Authors: Yuan, Chunhua; Li, Junan; Poi, Mingjye; Byeon, In-Ja; Tsai, Ming-Daw
Citation: Yuan, Chunhua; Li, Junan; Mahajan, A.; Poi, Mingjye; Byeon, In-Ja; Tsai, Ming-Daw. "Solution structure of the human oncogenic protein gankyrin containing seven ankyrin repeats and analysis of its structure--function relationship." Biochemistry 43, 12152-12161 (2004).
Assembly members:
gankyrin, polymer, 226 residues, Formula weight is not available
Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: recombinant technology
Entity Sequences (FASTA):
gankyrin: MEGCVSNLMVCNLAYSGKLE
ELKESILADKSLATRTDQDS
RTALHWACSAGHTEIVEFLL
QLGVPVNDKDDAGWSPLHIA
ASAGRDEIVKALLGKGAQVN
AVNQNGCTPLHYAASKNRHE
IAVMLLEGGANPDAKDHYEA
TAMHRAAAKGNLKMIHILLY
YKASTNIQDTEGNTPLHLAC
DEERVEEAKLLVSQGASIYI
ENKEEKTPLQVAKGGLGLIL
KRMVEG
- assigned_chemical_shifts
Data type | Count |
1H chemical shifts | 428 |
13C chemical shifts | 642 |
15N chemical shifts | 217 |
Additional metadata:
Assembly:
Entity Assembly ID | Entity Name | Entity ID |
---|---|---|
1 | gankyrin | 1 |
Entities:
Entity 1, gankyrin 226 residues - Formula weight is not available
1 | MET | GLU | GLY | CYS | VAL | SER | ASN | LEU | MET | VAL | ||||
2 | CYS | ASN | LEU | ALA | TYR | SER | GLY | LYS | LEU | GLU | ||||
3 | GLU | LEU | LYS | GLU | SER | ILE | LEU | ALA | ASP | LYS | ||||
4 | SER | LEU | ALA | THR | ARG | THR | ASP | GLN | ASP | SER | ||||
5 | ARG | THR | ALA | LEU | HIS | TRP | ALA | CYS | SER | ALA | ||||
6 | GLY | HIS | THR | GLU | ILE | VAL | GLU | PHE | LEU | LEU | ||||
7 | GLN | LEU | GLY | VAL | PRO | VAL | ASN | ASP | LYS | ASP | ||||
8 | ASP | ALA | GLY | TRP | SER | PRO | LEU | HIS | ILE | ALA | ||||
9 | ALA | SER | ALA | GLY | ARG | ASP | GLU | ILE | VAL | LYS | ||||
10 | ALA | LEU | LEU | GLY | LYS | GLY | ALA | GLN | VAL | ASN | ||||
11 | ALA | VAL | ASN | GLN | ASN | GLY | CYS | THR | PRO | LEU | ||||
12 | HIS | TYR | ALA | ALA | SER | LYS | ASN | ARG | HIS | GLU | ||||
13 | ILE | ALA | VAL | MET | LEU | LEU | GLU | GLY | GLY | ALA | ||||
14 | ASN | PRO | ASP | ALA | LYS | ASP | HIS | TYR | GLU | ALA | ||||
15 | THR | ALA | MET | HIS | ARG | ALA | ALA | ALA | LYS | GLY | ||||
16 | ASN | LEU | LYS | MET | ILE | HIS | ILE | LEU | LEU | TYR | ||||
17 | TYR | LYS | ALA | SER | THR | ASN | ILE | GLN | ASP | THR | ||||
18 | GLU | GLY | ASN | THR | PRO | LEU | HIS | LEU | ALA | CYS | ||||
19 | ASP | GLU | GLU | ARG | VAL | GLU | GLU | ALA | LYS | LEU | ||||
20 | LEU | VAL | SER | GLN | GLY | ALA | SER | ILE | TYR | ILE | ||||
21 | GLU | ASN | LYS | GLU | GLU | LYS | THR | PRO | LEU | GLN | ||||
22 | VAL | ALA | LYS | GLY | GLY | LEU | GLY | LEU | ILE | LEU | ||||
23 | LYS | ARG | MET | VAL | GLU | GLY |
Samples:
sample_1: gankyrin, [U-13C; U-15N; U-70% 2H], 0.4 0.5 mM; HEPES 5 mM; EDTA 1 uM; DTT 1 mM
Ex-cond_1: pH: 7.4; temperature: 300 K
Experiments:
Name | Sample | Sample state | Sample conditions |
---|---|---|---|
TROSY-HNCA | not available | not available | not available |
TROSY-HN(CO)CA | not available | not available | not available |
TROSY-HNCACB | not available | not available | not available |
TROSY-HNCO | not available | not available | not available |
15N-edited NOESY-HSQC | not available | not available | not available |
Software:
XWINNMR v3.1 -
NMR spectrometers:
- Bruker DMX 600 MHz
- Bruker DRX 800 MHz
Related Database Links:
PDB | |
DBJ | BAA33215 BAA34594 BAE87161 BAE87972 BAE88401 |
GB | AAH11960 AAV38495 AAX41449 AAY18907 ACT64478 |
REF | NP_001248034 NP_002805 XP_001926942 XP_002763200 XP_002832022 |
SP | O75832 |
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts