BMRB Entry 7130
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR7130
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Title: Backbone NMR assignment of the 29.6 kDa Rhodanese protein from Azotobacter vinelandii PubMed: 16933019
Deposition date: 2006-05-24 Original release date: 2006-10-02
Authors: Gallo, Mariana; Melis, Riccardo; Paci, Maurizio; Melino, Sonia; Cicero, Daniel
Citation: Gallo, Mariana; Melino, Sonia; Melis, Riccardo; Paci, Maurizio; Cicero, Daniel. "Backbone NMR assignment of the 29.6 kDa Rhodanese protein from Azotobacter vinelandii" J. Biomol. NMR 36, 73-73 (2006).
Assembly members:
Rhodanese, polymer, 271 residues, Formula weight is not available
Natural source: Common Name: Azotobacter vinelandii Taxonomy ID: 354 Superkingdom: Eubacteria Kingdom: Metazoa Genus/species: Azotobacter vinelandii
Experimental source: Production method: recombinant technology
Entity Sequences (FASTA):
Rhodanese: MDDFASLPLVIEPADLQARL
SAPELILVDLTSAARYAEGH
IPGARFVDPKRTQLGQPPAP
GLQPPREQLESLFGELGHRP
EAVYVVYDDEGGGWAGRFIW
LLDVIGQQRYHYLNGGLTAW
LAEDRPLSRELPAPAGGPVA
LSLHDEPTASRDYLLGRLGA
ADLAIWDARSPQEYRGEKVL
AAKGGHIPGAVNFEWTAAMD
PSRALRIRTDIAGRLEELGI
TPDKEIVTHCQTHHRSGLTY
LIAKALGYPRVKGYAGSWGE
WGNHPDTPVEL
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 720 |
| 15N chemical shifts | 233 |
| 1H chemical shifts | 234 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | Rhodanese | 1 |
Entities:
Entity 1, Rhodanese 271 residues - Formula weight is not available
| 1 | MET | ASP | ASP | PHE | ALA | SER | LEU | PRO | LEU | VAL | ||||
| 2 | ILE | GLU | PRO | ALA | ASP | LEU | GLN | ALA | ARG | LEU | ||||
| 3 | SER | ALA | PRO | GLU | LEU | ILE | LEU | VAL | ASP | LEU | ||||
| 4 | THR | SER | ALA | ALA | ARG | TYR | ALA | GLU | GLY | HIS | ||||
| 5 | ILE | PRO | GLY | ALA | ARG | PHE | VAL | ASP | PRO | LYS | ||||
| 6 | ARG | THR | GLN | LEU | GLY | GLN | PRO | PRO | ALA | PRO | ||||
| 7 | GLY | LEU | GLN | PRO | PRO | ARG | GLU | GLN | LEU | GLU | ||||
| 8 | SER | LEU | PHE | GLY | GLU | LEU | GLY | HIS | ARG | PRO | ||||
| 9 | GLU | ALA | VAL | TYR | VAL | VAL | TYR | ASP | ASP | GLU | ||||
| 10 | GLY | GLY | GLY | TRP | ALA | GLY | ARG | PHE | ILE | TRP | ||||
| 11 | LEU | LEU | ASP | VAL | ILE | GLY | GLN | GLN | ARG | TYR | ||||
| 12 | HIS | TYR | LEU | ASN | GLY | GLY | LEU | THR | ALA | TRP | ||||
| 13 | LEU | ALA | GLU | ASP | ARG | PRO | LEU | SER | ARG | GLU | ||||
| 14 | LEU | PRO | ALA | PRO | ALA | GLY | GLY | PRO | VAL | ALA | ||||
| 15 | LEU | SER | LEU | HIS | ASP | GLU | PRO | THR | ALA | SER | ||||
| 16 | ARG | ASP | TYR | LEU | LEU | GLY | ARG | LEU | GLY | ALA | ||||
| 17 | ALA | ASP | LEU | ALA | ILE | TRP | ASP | ALA | ARG | SER | ||||
| 18 | PRO | GLN | GLU | TYR | ARG | GLY | GLU | LYS | VAL | LEU | ||||
| 19 | ALA | ALA | LYS | GLY | GLY | HIS | ILE | PRO | GLY | ALA | ||||
| 20 | VAL | ASN | PHE | GLU | TRP | THR | ALA | ALA | MET | ASP | ||||
| 21 | PRO | SER | ARG | ALA | LEU | ARG | ILE | ARG | THR | ASP | ||||
| 22 | ILE | ALA | GLY | ARG | LEU | GLU | GLU | LEU | GLY | ILE | ||||
| 23 | THR | PRO | ASP | LYS | GLU | ILE | VAL | THR | HIS | CYS | ||||
| 24 | GLN | THR | HIS | HIS | ARG | SER | GLY | LEU | THR | TYR | ||||
| 25 | LEU | ILE | ALA | LYS | ALA | LEU | GLY | TYR | PRO | ARG | ||||
| 26 | VAL | LYS | GLY | TYR | ALA | GLY | SER | TRP | GLY | GLU | ||||
| 27 | TRP | GLY | ASN | HIS | PRO | ASP | THR | PRO | VAL | GLU | ||||
| 28 | LEU |
Samples:
sample_1: Rhodanese, [U-95% 13C; U-90% 15N; U-70% 2H], 0.5 ± 0.1 mM; deuterated Tris 100 ± 1.0 mM; NaCl 300 ± 5.0 mM; perdeuterated b-octil glucoside 0.2 ± 0.05 %
conditions_1: ionic strength: 0.3 M; pH: 6.8; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 1H15N_HSQC | sample_1 | not available | conditions_1 |
| trosy-HNCO | sample_1 | not available | conditions_1 |
| trosy-HNCA | sample_1 | not available | conditions_1 |
| trosy-HNcoCA | sample_1 | not available | conditions_1 |
| trosy-HNCOCACB | sample_1 | not available | conditions_1 |
| trosy-HNCACB | sample_1 | not available | conditions_1 |
| trosy-HNcaCO | sample_1 | not available | conditions_1 |
| 15Nedited 1H1H NOESY | sample_1 | not available | conditions_1 |
Software:
No software information available
NMR spectrometers:
Related Database Links:
| PDB | |
| GB | AAB03239 ACO76991 AGK13937 AGK18661 |
| REF | WP_012699416 YP_002797966 YP_007891778 YP_007896826 |
| SP | P52197 |
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts