==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 02-SEP-98 1BT0 . COMPND 2 MOLECULE: PROTEIN (UBIQUITIN-LIKE PROTEIN 7, RUB1); . SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; . AUTHOR W.P.DELACRUZ,A.J.FISHER . 73 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4406.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 67.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 5.5 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 21.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 6.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 12.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 15.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 58 0, 0.0 16,-2.4 0, 0.0 2,-0.6 0.000 360.0 360.0 360.0 134.1 13.6 -8.1 1.1 2 2 A L E +A 16 0A 82 14,-0.2 62,-3.1 12,-0.1 14,-0.2 -0.681 360.0 179.0 -88.6 125.9 12.5 -5.0 -0.7 3 3 A I E -A 15 0A 3 12,-2.7 12,-2.1 -2,-0.6 2,-0.4 -0.676 22.9-127.0-116.9 166.8 9.1 -3.5 0.3 4 4 A K E -Ab 14 66A 60 61,-2.5 63,-3.0 10,-0.2 2,-0.6 -0.969 13.1-162.4-115.9 138.8 7.1 -0.4 -0.8 5 5 A V E -Ab 13 67A 0 8,-2.5 8,-2.4 -2,-0.4 2,-0.4 -0.944 12.1-156.9-121.0 111.2 5.8 2.3 1.6 6 6 A K E -Ab 12 68A 87 61,-2.4 63,-3.7 -2,-0.6 6,-0.2 -0.759 7.7-156.1 -91.0 134.1 3.1 4.5 0.1 7 7 A T > - 0 0 18 4,-2.5 3,-1.8 -2,-0.4 63,-0.1 -0.594 30.8-105.6-103.7 171.8 2.4 8.0 1.5 8 8 A L T 3 S+ 0 0 146 61,-0.4 62,-0.1 1,-0.3 -1,-0.1 0.669 119.9 58.4 -69.2 -17.2 -0.6 10.3 1.4 9 9 A T T 3 S- 0 0 130 2,-0.1 -1,-0.3 0, 0.0 -3,-0.0 0.362 123.4-105.8 -90.9 1.9 1.1 12.5 -1.1 10 10 A G S < S+ 0 0 40 -3,-1.8 2,-0.2 1,-0.3 -2,-0.2 0.544 70.5 148.5 88.5 8.6 1.3 9.5 -3.4 11 11 A K - 0 0 91 1,-0.0 -4,-2.5 -5,-0.0 2,-0.5 -0.522 34.9-153.4 -76.1 143.3 5.1 9.0 -2.9 12 12 A E E -A 6 0A 110 -6,-0.2 2,-0.5 -2,-0.2 -6,-0.2 -0.944 9.5-165.1-120.8 110.5 6.2 5.4 -3.1 13 13 A I E -A 5 0A 2 -8,-2.4 -8,-2.5 -2,-0.5 2,-0.5 -0.852 10.1-147.5 -96.2 124.5 9.4 4.7 -1.0 14 14 A E E +A 4 0A 102 -2,-0.5 2,-0.4 -10,-0.2 -10,-0.2 -0.757 22.5 179.5 -89.8 129.1 11.4 1.4 -1.7 15 15 A I E -A 3 0A 5 -12,-2.1 -12,-2.7 -2,-0.5 2,-0.6 -0.993 22.0-145.6-130.9 130.6 13.0 0.2 1.5 16 16 A D E +A 2 0A 103 -2,-0.4 -14,-0.2 -14,-0.2 2,-0.2 -0.831 32.4 171.9 -96.6 121.6 15.1 -3.0 1.8 17 17 A I - 0 0 2 -16,-2.4 3,-0.0 -2,-0.6 9,-0.0 -0.708 34.0-111.9-118.4 177.1 14.5 -4.5 5.3 18 18 A E > - 0 0 103 -2,-0.2 3,-2.3 4,-0.1 38,-0.3 -0.886 24.6-127.8-106.0 146.6 15.4 -7.8 7.2 19 19 A P T 3 S+ 0 0 52 0, 0.0 38,-2.4 0, 0.0 37,-0.3 0.823 113.1 56.1 -62.7 -24.4 12.5 -10.2 8.0 20 20 A T T 3 S+ 0 0 105 36,-0.2 2,-0.1 35,-0.1 38,-0.0 0.494 82.0 114.3 -84.9 -4.1 13.8 -10.0 11.6 21 21 A D < - 0 0 14 -3,-2.3 35,-2.0 34,-0.1 36,-0.3 -0.465 67.0-125.6 -70.0 142.4 13.5 -6.2 11.8 22 22 A T B > -E 55 0B 51 33,-0.2 4,-1.7 -2,-0.1 33,-0.3 -0.389 28.0-108.5 -74.5 165.1 11.0 -4.9 14.3 23 23 A I H > S+ 0 0 0 31,-2.3 4,-1.9 28,-0.5 29,-0.2 0.823 123.4 57.4 -68.0 -28.6 8.5 -2.4 12.9 24 24 A D H > S+ 0 0 53 28,-2.2 4,-2.1 30,-0.4 -1,-0.2 0.946 104.8 50.4 -68.8 -36.2 10.4 0.3 14.8 25 25 A R H > S+ 0 0 71 27,-0.3 4,-2.0 1,-0.2 -2,-0.2 0.881 106.3 55.7 -63.2 -36.8 13.6 -0.7 12.9 26 26 A I H X S+ 0 0 0 -4,-1.7 4,-2.1 2,-0.2 -1,-0.2 0.934 106.7 50.3 -61.0 -43.5 11.6 -0.4 9.6 27 27 A K H X S+ 0 0 14 -4,-1.9 4,-2.6 1,-0.2 -2,-0.2 0.893 108.8 53.1 -62.0 -35.4 10.7 3.2 10.6 28 28 A E H X S+ 0 0 76 -4,-2.1 4,-2.6 2,-0.2 -1,-0.2 0.887 106.6 49.5 -68.1 -40.2 14.3 3.9 11.3 29 29 A R H X S+ 0 0 53 -4,-2.0 4,-1.4 2,-0.2 -1,-0.2 0.869 110.4 53.1 -65.3 -33.2 15.3 2.7 7.8 30 30 A V H X S+ 0 0 0 -4,-2.1 4,-2.6 1,-0.2 6,-0.5 0.926 109.0 49.2 -65.9 -42.6 12.6 5.0 6.5 31 31 A E H X S+ 0 0 83 -4,-2.6 4,-2.6 1,-0.2 -2,-0.2 0.930 106.9 55.1 -63.5 -39.5 14.2 7.8 8.5 32 32 A E H < S+ 0 0 132 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.800 118.7 33.2 -62.9 -31.8 17.7 7.0 7.1 33 33 A K H < S+ 0 0 129 -4,-1.4 -1,-0.2 -3,-0.3 -2,-0.2 0.764 136.9 17.9 -90.3 -38.3 16.4 7.3 3.5 34 34 A E H < S- 0 0 59 -4,-2.6 -3,-0.2 -5,-0.2 -2,-0.2 0.529 90.9-124.2-118.9 -8.3 13.7 10.0 3.7 35 35 A G < + 0 0 53 -4,-2.6 -4,-0.2 -5,-0.5 -3,-0.1 0.530 58.4 143.5 75.5 9.2 14.3 11.9 7.0 36 36 A I - 0 0 35 -6,-0.5 -1,-0.2 -9,-0.1 -2,-0.1 -0.744 55.6-117.6 -86.6 119.8 10.8 11.3 8.4 37 37 A P > - 0 0 39 0, 0.0 3,-2.2 0, 0.0 4,-0.4 -0.393 13.8-128.4 -60.9 137.4 11.2 10.8 12.2 38 38 A P G > S+ 0 0 20 0, 0.0 3,-1.9 0, 0.0 -10,-0.1 0.856 106.0 64.7 -53.0 -36.6 10.0 7.3 13.4 39 39 A V G 3 S+ 0 0 106 1,-0.3 -3,-0.0 -12,-0.0 -12,-0.0 0.747 101.7 49.0 -65.1 -21.0 7.9 8.9 16.0 40 40 A Q G < S+ 0 0 76 -3,-2.2 32,-3.4 31,-0.1 2,-0.4 0.478 92.7 95.7 -94.3 -1.5 5.7 10.5 13.4 41 41 A Q E < -C 71 0A 5 -3,-1.9 2,-0.5 -4,-0.4 30,-0.2 -0.776 45.4-175.0 -95.7 130.9 5.2 7.4 11.3 42 42 A R E -C 70 0A 106 28,-2.0 28,-2.1 -2,-0.4 2,-0.4 -0.990 17.5-159.1-115.0 121.5 2.1 5.1 11.5 43 43 A L E -C 69 0A 0 -2,-0.5 7,-2.9 7,-0.4 2,-0.4 -0.882 4.9-162.2-106.9 137.6 2.6 2.1 9.2 44 44 A I E +CD 68 49A 41 24,-2.3 24,-2.6 -2,-0.4 2,-0.3 -0.948 18.9 154.8-124.8 136.8 -0.4 0.0 8.0 45 45 A Y E > + D 0 48A 52 3,-2.4 3,-1.3 -2,-0.4 22,-0.1 -0.979 67.3 18.0-157.0 141.7 -0.4 -3.4 6.6 46 46 A A T 3 S- 0 0 69 -2,-0.3 3,-0.1 1,-0.3 -1,-0.1 0.850 131.7 -62.9 61.2 30.1 -3.2 -6.1 6.5 47 47 A G T 3 S+ 0 0 78 1,-0.2 2,-0.3 -3,-0.0 -1,-0.3 0.666 117.8 87.5 70.2 22.2 -5.6 -3.4 7.2 48 48 A K E < S-D 45 0A 105 -3,-1.3 -3,-2.4 -5,-0.0 2,-0.4 -0.952 82.6 -96.9-150.0 154.1 -4.2 -2.5 10.6 49 49 A Q E -D 44 0A 109 -2,-0.3 2,-0.2 -5,-0.2 -5,-0.2 -0.672 45.2-124.2 -73.2 129.3 -1.6 -0.3 12.3 50 50 A L - 0 0 10 -7,-2.9 2,-0.4 -2,-0.4 -7,-0.4 -0.579 18.1-122.0 -81.3 137.4 1.6 -2.2 13.0 51 51 A A > - 0 0 38 -2,-0.2 3,-2.2 1,-0.1 -28,-0.5 -0.637 14.9-132.0 -82.6 131.8 3.1 -2.4 16.5 52 52 A D T 3 S+ 0 0 69 -2,-0.4 -28,-2.2 1,-0.3 -27,-0.3 0.693 103.0 51.8 -50.9 -32.6 6.7 -1.1 16.9 53 53 A D T 3 S+ 0 0 135 -30,-0.2 -1,-0.3 -31,-0.2 2,-0.2 0.456 91.6 87.3 -90.5 -5.8 7.8 -4.1 18.9 54 54 A K S < S- 0 0 77 -3,-2.2 -31,-2.3 1,-0.1 -30,-0.4 -0.464 75.4-118.7 -87.1 162.4 6.6 -6.8 16.5 55 55 A T B > -E 22 0B 30 -33,-0.3 4,-1.3 -2,-0.2 -33,-0.2 -0.657 18.1-117.0-100.7 163.0 8.8 -8.1 13.6 56 56 A A T >4>S+ 0 0 0 -35,-2.0 5,-2.4 -38,-0.3 3,-0.6 0.914 122.4 55.9 -60.6 -40.7 8.2 -8.0 9.8 57 57 A K G >45S+ 0 0 159 -38,-2.4 3,-1.8 -36,-0.3 -1,-0.2 0.915 100.0 57.8 -59.8 -44.1 8.3 -11.8 10.2 58 58 A D G 345S+ 0 0 88 1,-0.3 -1,-0.3 -39,-0.2 -2,-0.2 0.802 111.2 42.3 -55.0 -35.6 5.5 -11.6 12.9 59 59 A Y G <<5S- 0 0 48 -4,-1.3 -1,-0.3 -3,-0.6 -2,-0.2 0.279 110.8-123.0 -92.2 4.6 3.2 -9.9 10.2 60 60 A N T < 5 + 0 0 65 -3,-1.8 -3,-0.2 -4,-0.3 2,-0.1 0.871 45.9 177.0 55.1 36.4 4.3 -12.3 7.5 61 61 A I < - 0 0 10 -5,-2.4 2,-0.2 -42,-0.1 -1,-0.2 -0.500 8.6-170.1 -68.6 141.8 5.5 -9.2 5.4 62 62 A E > - 0 0 129 -2,-0.1 3,-2.4 1,-0.1 -1,-0.0 -0.805 33.1 -63.1-129.0 174.0 7.2 -10.5 2.2 63 63 A G T 3 S+ 0 0 51 1,-0.3 -60,-0.2 -2,-0.2 -1,-0.1 -0.338 124.0 17.7 -57.8 134.0 9.2 -9.2 -0.8 64 64 A G T 3 S+ 0 0 56 -62,-3.1 -1,-0.3 1,-0.3 -61,-0.2 0.375 87.8 150.6 83.2 -2.7 7.1 -6.7 -2.7 65 65 A S < - 0 0 15 -3,-2.4 -61,-2.5 -63,-0.2 2,-0.5 -0.277 39.6-138.9 -60.7 146.0 4.7 -6.1 0.1 66 66 A V E -b 4 0A 67 -63,-0.2 2,-0.3 -61,-0.1 -61,-0.2 -0.967 18.9-173.0-112.2 123.0 3.1 -2.6 0.2 67 67 A L E -b 5 0A 0 -63,-3.0 -61,-2.4 -2,-0.5 2,-0.4 -0.823 19.4-131.2-107.4 150.6 2.7 -0.8 3.6 68 68 A H E -bC 6 44A 89 -24,-2.6 -24,-2.3 -2,-0.3 2,-0.5 -0.892 13.7-146.9-108.4 140.0 0.8 2.5 3.9 69 69 A L E + C 0 43A 6 -63,-3.7 -61,-0.4 -2,-0.4 2,-0.4 -0.923 16.1 178.9-105.1 130.6 2.2 5.5 5.7 70 70 A V E - C 0 42A 36 -28,-2.1 -28,-2.0 -2,-0.5 2,-0.3 -0.977 30.3-123.0-124.7 133.1 0.1 8.0 7.6 71 71 A L E + C 0 41A 100 -2,-0.4 -30,-0.2 -30,-0.2 2,-0.2 -0.641 34.0 179.0 -80.0 134.5 1.8 10.9 9.5 72 72 A A 0 0 16 -32,-3.4 -31,-0.1 -2,-0.3 -2,-0.0 -0.511 360.0 360.0-151.6 88.4 0.9 11.0 13.1 73 73 A L 0 0 184 -2,-0.2 -33,-0.1 -33,-0.1 -2,-0.0 -0.905 360.0 360.0-178.9 360.0 2.1 13.4 15.8