==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 15-MAR-06 2DGP . COMPND 2 MOLECULE: BRUNO-LIKE 4, RNA BINDING PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 106 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8129.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 58.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 15.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 11.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 8.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 17 16.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 41 A G 0 0 128 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-151.1 -14.7 12.1 15.8 2 42 A S + 0 0 137 2,-0.1 3,-0.1 3,-0.0 0, 0.0 0.849 360.0 12.4-101.1 -56.8 -11.3 12.4 17.4 3 43 A S S S+ 0 0 109 1,-0.2 2,-0.4 2,-0.0 3,-0.0 0.867 80.4 153.7 -89.6 -44.0 -8.8 11.9 14.5 4 44 A G + 0 0 44 1,-0.2 -1,-0.2 2,-0.0 3,-0.1 -0.318 7.8 164.9 54.2-108.3 -11.2 12.2 11.6 5 45 A S + 0 0 75 -2,-0.4 2,-1.2 1,-0.2 -1,-0.2 0.900 14.7 162.4 62.5 42.1 -9.1 13.4 8.7 6 46 A S + 0 0 126 -3,-0.0 -1,-0.2 1,-0.0 2,-0.1 -0.702 29.9 99.7 -96.6 84.7 -11.8 12.5 6.2 7 47 A G S S- 0 0 68 -2,-1.2 2,-0.3 -3,-0.1 56,-0.0 -0.112 70.3 -65.8-131.7-130.6 -10.7 14.4 3.1 8 48 A M - 0 0 157 -2,-0.1 3,-0.1 55,-0.1 33,-0.0 -0.910 51.9 -81.9-134.2 161.3 -8.9 13.7 -0.2 9 49 A K - 0 0 68 -2,-0.3 54,-0.2 1,-0.1 55,-0.2 -0.291 60.3 -90.2 -61.7 144.1 -5.4 12.8 -1.3 10 50 A D > - 0 0 39 53,-2.8 3,-0.5 52,-0.2 -1,-0.1 -0.054 37.9-107.1 -51.4 156.3 -2.9 15.6 -1.6 11 51 A H T 3 S+ 0 0 187 1,-0.3 2,-0.8 -3,-0.1 -1,-0.1 0.924 117.3 39.1 -52.6 -49.4 -2.7 17.4 -4.9 12 52 A D T 3 S- 0 0 138 2,-0.0 -1,-0.3 0, 0.0 -2,-0.1 -0.718 85.1-176.2-106.7 81.3 0.7 15.8 -5.7 13 53 A A < - 0 0 37 -2,-0.8 2,-0.5 -3,-0.5 50,-0.1 -0.330 24.0-119.7 -74.2 158.3 0.3 12.2 -4.4 14 54 A I E -A 62 0A 48 48,-0.6 2,-1.2 -2,-0.1 48,-0.9 -0.888 12.8-141.5-105.5 125.1 3.2 9.7 -4.4 15 55 A K E -A 61 0A 102 -2,-0.5 78,-2.7 46,-0.2 2,-0.5 -0.691 19.2-156.3 -86.4 94.2 2.8 6.5 -6.4 16 56 A L E -AB 60 92A 1 44,-2.5 44,-2.4 -2,-1.2 2,-0.7 -0.584 5.1-147.3 -74.5 121.4 4.5 3.9 -4.3 17 57 A F E -AB 59 91A 63 74,-2.9 74,-1.9 -2,-0.5 2,-0.4 -0.812 14.0-165.3 -94.7 114.3 5.7 0.9 -6.4 18 58 A I E +AB 58 90A 4 40,-2.5 40,-1.8 -2,-0.7 2,-0.2 -0.819 11.4 174.5-101.7 137.2 5.6 -2.4 -4.5 19 59 A G E +AB 57 89A 9 70,-1.9 70,-1.3 -2,-0.4 38,-0.2 -0.797 46.3 60.0-133.1 175.5 7.3 -5.5 -5.7 20 60 A Q S S+ 0 0 64 36,-0.8 61,-0.2 -2,-0.2 37,-0.2 0.904 71.8 138.3 72.2 42.9 8.1 -9.1 -4.7 21 61 A I - 0 0 8 35,-1.3 -1,-0.2 -3,-0.1 2,-0.0 -0.975 50.9-122.7-125.6 134.3 4.4 -10.1 -4.5 22 62 A P > - 0 0 26 0, 0.0 3,-0.9 0, 0.0 2,-0.6 -0.291 23.2-117.8 -69.7 155.0 2.8 -13.3 -5.6 23 63 A R T 3 S+ 0 0 175 1,-0.2 32,-0.0 31,-0.1 -2,-0.0 -0.171 100.6 81.0 -86.7 42.0 -0.1 -13.4 -8.1 24 64 A N T 3 S+ 0 0 107 -2,-0.6 -1,-0.2 2,-0.0 2,-0.1 0.253 74.3 87.6-127.0 6.8 -2.3 -15.0 -5.5 25 65 A L < - 0 0 39 -3,-0.9 2,-0.3 2,-0.0 3,-0.0 -0.406 62.6-138.8-100.1 178.9 -3.3 -11.9 -3.6 26 66 A D >> - 0 0 78 -2,-0.1 4,-1.5 1,-0.1 3,-1.4 -0.969 23.1-118.7-140.1 154.9 -6.1 -9.3 -4.0 27 67 A E H 3> S+ 0 0 76 -2,-0.3 4,-3.2 1,-0.3 3,-0.2 0.870 118.2 53.3 -58.7 -38.1 -6.5 -5.5 -3.8 28 68 A K H 34 S+ 0 0 167 1,-0.2 -1,-0.3 2,-0.2 -3,-0.0 0.602 111.8 47.2 -73.1 -10.8 -9.0 -6.0 -1.0 29 69 A D H <4 S+ 0 0 102 -3,-1.4 4,-0.4 2,-0.1 -2,-0.2 0.626 120.3 35.6-102.1 -20.2 -6.4 -8.1 0.8 30 70 A L H X S+ 0 0 12 -4,-1.5 4,-1.4 -3,-0.2 5,-0.3 0.779 108.6 61.8-100.7 -37.8 -3.5 -5.7 0.3 31 71 A K H X S+ 0 0 81 -4,-3.2 4,-3.2 -5,-0.2 9,-0.2 0.901 98.2 61.3 -55.4 -43.4 -5.4 -2.4 0.7 32 72 A P H > S+ 0 0 48 0, 0.0 4,-1.8 0, 0.0 -1,-0.2 0.949 102.5 48.0 -48.0 -63.2 -6.4 -3.3 4.2 33 73 A L H >> S+ 0 0 58 -4,-0.4 3,-1.5 1,-0.2 4,-0.7 0.943 117.1 40.5 -43.6 -68.7 -2.8 -3.6 5.6 34 74 A F H >X S+ 0 0 10 -4,-1.4 4,-3.1 1,-0.3 3,-2.0 0.880 108.1 64.2 -49.6 -42.5 -1.6 -0.3 4.1 35 75 A E H 3< S+ 0 0 71 -4,-3.2 -1,-0.3 1,-0.3 -2,-0.2 0.854 95.6 58.6 -50.9 -37.7 -5.0 1.2 5.1 36 76 A E H << S+ 0 0 149 -4,-1.8 -1,-0.3 -3,-1.5 -2,-0.2 0.770 114.1 37.8 -64.3 -25.7 -4.1 0.6 8.7 37 77 A F H << S+ 0 0 85 -3,-2.0 2,-0.3 -4,-0.7 -2,-0.2 0.860 131.6 5.2 -91.9 -44.6 -1.0 2.8 8.2 38 78 A G S < S- 0 0 6 -4,-3.1 2,-2.1 32,-0.1 -1,-0.3 -0.954 77.3-100.7-141.2 160.2 -2.5 5.4 5.9 39 79 A K - 0 0 90 -2,-0.3 24,-0.5 -3,-0.1 -4,-0.1 -0.507 47.3-148.9 -80.5 74.3 -5.8 6.5 4.4 40 80 A I - 0 0 27 -2,-2.1 22,-0.2 -9,-0.2 3,-0.1 -0.063 15.7-169.1 -43.6 139.6 -5.3 5.0 1.0 41 81 A Y - 0 0 111 20,-1.9 2,-0.3 1,-0.4 -1,-0.1 0.773 68.3 -0.4-102.7 -38.7 -7.0 6.9 -1.8 42 82 A E E -C 61 0A 111 19,-0.9 19,-1.1 2,-0.0 2,-0.4 -0.957 59.4-164.9-157.1 135.0 -6.7 4.5 -4.7 43 83 A L E +C 60 0A 18 -2,-0.3 2,-0.4 17,-0.2 17,-0.2 -0.978 9.0 176.0-126.1 135.1 -5.1 1.1 -5.2 44 84 A T E -C 59 0A 80 15,-2.1 15,-3.3 -2,-0.4 2,-0.8 -0.984 20.1-147.1-141.7 127.5 -4.3 -0.6 -8.5 45 85 A V - 0 0 11 -2,-0.4 2,-0.3 13,-0.3 13,-0.2 -0.828 29.2-120.8 -97.4 109.2 -2.5 -3.9 -9.1 46 86 A L + 0 0 46 -2,-0.8 9,-1.7 9,-0.1 11,-0.4 -0.252 48.5 161.3 -49.5 104.0 -0.5 -3.9 -12.3 47 87 A K - 0 0 83 -2,-0.3 6,-0.3 7,-0.2 7,-0.2 -0.893 26.6-148.8-136.1 105.1 -2.1 -6.7 -14.3 48 88 A D - 0 0 57 4,-3.2 7,-0.0 -2,-0.4 0, 0.0 -0.078 7.8-145.8 -63.5 169.0 -1.6 -7.0 -18.0 49 89 A R S S+ 0 0 231 5,-0.0 -1,-0.1 3,-0.0 4,-0.1 0.356 90.6 44.3-117.8 -0.6 -4.3 -8.5 -20.3 50 90 A F S S- 0 0 184 0, 0.0 3,-0.1 0, 0.0 -2,-0.0 0.799 136.3 -34.9-105.9 -71.6 -2.0 -10.1 -22.8 51 91 A T S S+ 0 0 130 2,-0.0 2,-0.8 1,-0.0 3,-0.3 0.582 125.5 71.9-127.3 -32.1 0.9 -11.9 -21.1 52 92 A G + 0 0 18 1,-0.2 -4,-3.2 -5,-0.1 3,-0.3 -0.097 53.4 155.3 -81.7 39.4 1.7 -9.8 -18.1 53 93 A M S S+ 0 0 102 -2,-0.8 2,-0.3 -6,-0.3 -1,-0.2 0.788 79.8 12.4 -33.9 -37.0 -1.5 -11.0 -16.4 54 94 A H - 0 0 15 -3,-0.3 2,-0.4 -7,-0.2 -1,-0.2 -0.856 61.1-163.7-151.3 110.5 0.4 -10.2 -13.2 55 95 A K - 0 0 100 -9,-1.7 -34,-0.1 -3,-0.3 -9,-0.1 -0.068 50.6-113.0 -83.3 35.8 3.7 -8.2 -13.0 56 96 A G S S+ 0 0 26 -2,-0.4 -35,-1.3 1,-0.1 -36,-0.8 0.817 89.9 81.5 34.2 44.7 4.2 -9.5 -9.5 57 97 A C E -A 19 0A 7 -11,-0.4 2,-0.3 -38,-0.2 -2,-0.2 -0.964 59.1-154.1-161.7 172.9 3.7 -6.0 -8.3 58 98 A A E -A 18 0A 6 -40,-1.8 -40,-2.5 -2,-0.3 2,-0.4 -0.991 17.6-123.2-157.2 152.7 1.1 -3.3 -7.4 59 99 A F E -AC 17 44A 42 -15,-3.3 -15,-2.1 -2,-0.3 2,-0.4 -0.845 24.9-170.3-103.7 135.3 0.8 0.5 -7.3 60 100 A L E -AC 16 43A 0 -44,-2.4 -44,-2.5 -2,-0.4 2,-0.5 -0.968 7.9-161.7-126.8 141.0 -0.3 2.3 -4.1 61 101 A T E -AC 15 42A 31 -19,-1.1 -20,-1.9 -2,-0.4 -19,-0.9 -0.958 7.8-156.3-126.2 114.9 -1.2 5.9 -3.5 62 102 A Y E -A 14 0A 2 -48,-0.9 -48,-0.6 -2,-0.5 -52,-0.2 -0.727 15.2-140.1 -91.5 135.4 -1.2 7.5 -0.1 63 103 A C S S+ 0 0 18 -24,-0.5 -53,-2.8 -2,-0.4 2,-0.4 0.939 92.0 48.5 -55.9 -51.2 -3.4 10.5 0.6 64 104 A E S > S- 0 0 113 -55,-0.2 4,-1.7 1,-0.1 -1,-0.1 -0.799 74.8-146.3 -97.3 132.4 -0.7 12.2 2.7 65 105 A R H > S+ 0 0 164 -2,-0.4 4,-1.1 1,-0.2 -1,-0.1 0.945 100.7 48.4 -58.6 -51.3 2.9 12.4 1.4 66 106 A E H >> S+ 0 0 120 1,-0.2 4,-1.2 2,-0.2 3,-1.1 0.951 104.4 59.8 -54.4 -54.9 4.4 12.0 4.9 67 107 A S H >> S+ 0 0 15 1,-0.3 4,-1.5 2,-0.2 3,-1.2 0.898 98.0 59.1 -39.0 -58.4 2.3 9.0 5.8 68 108 A A H 3X S+ 0 0 0 -4,-1.7 4,-2.9 1,-0.3 -1,-0.3 0.874 99.8 57.8 -39.5 -50.1 3.7 7.1 2.8 69 109 A L H S+ 0 0 2 -4,-1.5 4,-2.8 1,-0.2 5,-0.5 0.834 113.3 58.8 -51.9 -34.8 4.4 2.7 5.9 72 112 A Q H X5S+ 0 0 31 -4,-2.9 4,-2.9 -5,-0.3 -2,-0.2 0.987 115.5 29.8 -59.3 -63.9 7.5 2.6 3.6 73 113 A S H <5S+ 0 0 104 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.741 121.7 56.2 -68.9 -22.8 10.1 2.3 6.3 74 114 A A H <5S+ 0 0 30 -4,-2.9 -1,-0.2 -5,-0.3 -2,-0.2 0.839 122.9 23.2 -77.3 -34.9 7.5 0.5 8.5 75 115 A L H >X5S+ 0 0 6 -4,-2.8 3,-2.5 -5,-0.3 4,-1.5 0.882 97.5 99.3 -95.4 -54.8 6.9 -2.2 5.8 76 116 A H T 3< - 0 0 33 -2,-0.5 3,-1.4 -61,-0.2 2,-0.4 -0.219 35.9 -92.9 -60.9 150.4 4.8 -12.5 2.3 82 122 A P T 3 S+ 0 0 114 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 -0.522 111.6 23.6 -69.7 118.3 4.3 -16.3 2.5 83 123 A G T 3 S+ 0 0 83 -2,-0.4 2,-0.7 1,-0.2 3,-0.1 0.093 97.4 100.9 115.1 -21.7 6.1 -18.0 -0.4 84 124 A M < - 0 0 45 -3,-1.4 -1,-0.2 1,-0.2 4,-0.0 -0.873 57.6-156.9-102.6 114.5 8.7 -15.3 -1.1 85 125 A N S S+ 0 0 148 -2,-0.7 -1,-0.2 -3,-0.1 -2,-0.0 0.836 82.4 59.6 -54.9 -34.2 12.1 -16.0 0.3 86 126 A R S S- 0 0 175 1,-0.1 -5,-0.2 -3,-0.1 3,-0.1 -0.656 91.9-110.2 -98.2 154.2 12.8 -12.2 0.2 87 127 A P - 0 0 24 0, 0.0 2,-0.4 0, 0.0 -7,-0.3 0.016 46.9 -74.6 -69.7-178.4 10.7 -9.5 2.0 88 128 A I - 0 0 10 -9,-2.6 -11,-1.1 -13,-0.2 2,-0.4 -0.694 44.0-143.0 -85.9 129.8 8.4 -7.0 0.4 89 129 A Q E -B 19 0A 71 -70,-1.3 -70,-1.9 -2,-0.4 2,-0.4 -0.762 15.6-171.7 -95.1 135.7 10.1 -4.1 -1.4 90 130 A V E +B 18 0A 9 -2,-0.4 -72,-0.2 -72,-0.2 -14,-0.0 -0.967 17.6 147.4-131.9 118.0 8.6 -0.6 -1.3 91 131 A K E -B 17 0A 83 -74,-1.9 -74,-2.9 -2,-0.4 2,-0.1 -0.995 44.8-107.7-150.8 142.2 9.9 2.3 -3.4 92 132 A P E -B 16 0A 56 0, 0.0 2,-1.8 0, 0.0 -76,-0.2 -0.408 27.8-123.0 -69.8 141.4 8.3 5.4 -5.0 93 133 A A + 0 0 58 -78,-2.7 2,-0.3 -2,-0.1 -77,-0.1 -0.225 65.2 138.9 -79.3 48.8 7.9 5.4 -8.8 94 134 A D - 0 0 121 -2,-1.8 2,-0.7 -80,-0.0 -80,-0.0 -0.686 50.2-137.9 -96.7 149.6 10.0 8.6 -9.0 95 135 A S - 0 0 110 -2,-0.3 2,-0.4 2,-0.0 -2,-0.1 -0.872 16.7-158.9-111.2 100.9 12.6 9.4 -11.6 96 136 A E - 0 0 117 -2,-0.7 -2,-0.0 1,-0.1 0, 0.0 -0.637 34.7 -98.5 -81.1 129.3 15.7 11.0 -10.1 97 137 A S S S+ 0 0 125 -2,-0.4 2,-0.3 2,-0.0 -1,-0.1 -0.212 73.4 122.5 -48.1 118.8 17.9 12.9 -12.6 98 138 A R + 0 0 221 1,-0.1 -1,-0.0 -3,-0.0 -3,-0.0 -0.976 15.3 139.3-168.7 172.2 20.7 10.6 -13.6 99 139 A G + 0 0 79 1,-0.3 2,-0.3 -2,-0.3 -1,-0.1 0.477 48.3 92.5 139.8 61.2 22.5 8.8 -16.4 100 140 A G + 0 0 74 0, 0.0 -1,-0.3 0, 0.0 2,-0.3 -0.881 29.0 153.4-173.4 139.2 26.3 8.7 -16.2 101 141 A S + 0 0 130 -2,-0.3 0, 0.0 1,-0.1 0, 0.0 -0.923 27.7 98.4-169.6 142.7 29.1 6.5 -15.0 102 142 A G - 0 0 66 -2,-0.3 -1,-0.1 2,-0.0 0, 0.0 0.476 42.4-161.6 135.2 70.7 32.8 5.8 -15.7 103 143 A P + 0 0 125 0, 0.0 2,-0.3 0, 0.0 3,-0.1 -0.181 14.1 174.3 -69.8 165.3 35.4 7.5 -13.6 104 144 A S + 0 0 103 1,-0.1 -2,-0.0 0, 0.0 0, 0.0 -0.964 47.5 52.2-161.9 173.0 39.1 7.9 -14.6 105 145 A S 0 0 129 -2,-0.3 -1,-0.1 1,-0.1 0, 0.0 0.895 360.0 360.0 57.5 42.0 42.4 9.4 -13.7 106 146 A G 0 0 115 -3,-0.1 -1,-0.1 0, 0.0 0, 0.0 -0.753 360.0 360.0 89.3 360.0 42.2 7.9 -10.2