==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 25-DEC-06 2E62 . COMPND 2 MOLECULE: PROTEIN AT5G25060; . SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; . AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA, . 61 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5533.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 77.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 8.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 37 60.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 125 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 90.6 -28.5 -12.0 12.2 2 2 A S - 0 0 126 1,-0.0 2,-0.3 2,-0.0 3,-0.1 -0.184 360.0-167.9 -59.1 152.4 -26.3 -9.0 12.6 3 3 A S + 0 0 112 1,-0.1 -1,-0.0 0, 0.0 0, 0.0 -0.992 58.2 3.8-148.4 137.0 -25.7 -7.6 16.1 4 4 A G S S- 0 0 73 -2,-0.3 2,-0.2 1,-0.2 -1,-0.1 0.961 76.8-152.1 54.8 58.0 -24.2 -4.4 17.5 5 5 A S - 0 0 87 1,-0.1 2,-1.1 -3,-0.1 -1,-0.2 -0.431 2.6-147.4 -64.7 126.4 -23.6 -2.8 14.1 6 6 A S + 0 0 91 -2,-0.2 9,-0.2 1,-0.1 -1,-0.1 -0.715 62.6 95.8 -99.0 84.6 -20.7 -0.4 14.2 7 7 A G + 0 0 21 -2,-1.1 -1,-0.1 7,-0.1 -2,-0.1 -0.324 23.6 130.0-171.3 79.1 -21.6 2.3 11.8 8 8 A N S S- 0 0 165 -2,-0.0 2,-0.1 0, 0.0 -2,-0.0 0.745 82.5 -7.3-103.4 -34.9 -23.3 5.5 12.9 9 9 A G S > S- 0 0 32 0, 0.0 3,-1.6 0, 0.0 4,-0.3 -0.089 122.9 -22.9-130.1-130.6 -21.1 8.1 11.3 10 10 A M T >> S+ 0 0 160 1,-0.3 3,-2.4 2,-0.2 4,-1.2 0.796 121.3 75.9 -59.8 -28.5 -17.8 8.2 9.3 11 11 A D H 3> S+ 0 0 110 1,-0.3 4,-2.9 2,-0.2 -1,-0.3 0.831 79.2 71.9 -52.1 -34.1 -17.0 4.8 10.9 12 12 A E H <4 S+ 0 0 93 -3,-1.6 4,-0.3 1,-0.3 -1,-0.3 0.808 103.5 41.1 -52.6 -30.7 -19.5 3.2 8.5 13 13 A E H <> S+ 0 0 103 -3,-2.4 4,-1.4 -4,-0.3 -1,-0.3 0.747 111.7 55.6 -88.5 -27.7 -16.9 3.9 5.8 14 14 A Q H X S+ 0 0 58 -4,-1.2 4,-2.2 1,-0.2 -2,-0.2 0.888 95.8 64.5 -71.7 -40.4 -14.0 2.8 8.0 15 15 A R H < S+ 0 0 125 -4,-2.9 4,-0.4 1,-0.2 -1,-0.2 0.821 105.4 47.8 -52.1 -32.8 -15.4 -0.6 8.8 16 16 A Q H >> S+ 0 0 115 -4,-0.3 3,-1.9 -5,-0.3 4,-1.3 0.939 105.9 54.3 -74.6 -49.8 -15.1 -1.3 5.0 17 17 A K H 3X S+ 0 0 45 -4,-1.4 4,-1.7 1,-0.3 5,-0.2 0.845 97.4 67.7 -52.9 -35.8 -11.5 -0.1 4.7 18 18 A R H 3X S+ 0 0 138 -4,-2.2 4,-1.4 1,-0.2 -1,-0.3 0.821 101.0 48.8 -54.8 -32.2 -10.6 -2.5 7.5 19 19 A R H <> S+ 0 0 180 -3,-1.9 4,-2.2 -4,-0.4 5,-0.4 0.912 102.7 58.8 -74.7 -44.9 -11.4 -5.3 5.1 20 20 A R H X S+ 0 0 157 -4,-1.3 4,-1.3 1,-0.2 -2,-0.2 0.840 109.8 46.3 -53.1 -35.1 -9.3 -3.9 2.2 21 21 A I H X S+ 0 0 11 -4,-1.7 4,-3.0 2,-0.2 -1,-0.2 0.882 110.6 52.5 -75.7 -40.4 -6.3 -4.1 4.5 22 22 A E H X S+ 0 0 84 -4,-1.4 4,-2.6 2,-0.2 5,-0.2 0.988 112.9 41.0 -58.7 -64.5 -7.0 -7.6 5.8 23 23 A V H X S+ 0 0 90 -4,-2.2 4,-2.6 1,-0.2 5,-0.2 0.887 117.3 51.0 -51.6 -43.0 -7.4 -9.3 2.4 24 24 A A H X S+ 0 0 31 -4,-1.3 4,-2.6 -5,-0.4 -1,-0.2 0.926 109.7 49.4 -62.0 -46.8 -4.4 -7.3 1.1 25 25 A L H X S+ 0 0 26 -4,-3.0 4,-3.0 2,-0.2 -2,-0.2 0.957 114.0 44.6 -57.7 -54.4 -2.2 -8.3 4.1 26 26 A I H X S+ 0 0 88 -4,-2.6 4,-2.6 1,-0.2 5,-0.3 0.960 114.3 48.1 -55.1 -57.0 -3.0 -12.0 3.8 27 27 A E H X S+ 0 0 123 -4,-2.6 4,-2.5 -5,-0.2 -1,-0.2 0.885 113.8 49.4 -51.9 -42.3 -2.6 -12.0 -0.0 28 28 A Y H X S+ 0 0 66 -4,-2.6 4,-2.5 -5,-0.2 -1,-0.2 0.953 109.2 50.4 -63.3 -51.7 0.7 -10.1 0.4 29 29 A R H X S+ 0 0 133 -4,-3.0 4,-2.5 1,-0.2 -2,-0.2 0.938 114.0 44.7 -51.9 -53.4 2.1 -12.5 3.1 30 30 A E H X S+ 0 0 110 -4,-2.6 4,-2.4 1,-0.2 5,-0.3 0.946 111.7 52.0 -57.4 -51.9 1.3 -15.6 1.0 31 31 A T H X S+ 0 0 64 -4,-2.5 4,-1.7 -5,-0.3 -1,-0.2 0.859 111.0 49.7 -53.7 -37.7 2.7 -14.0 -2.2 32 32 A L H X>S+ 0 0 0 -4,-2.5 5,-2.3 2,-0.2 4,-0.6 0.932 108.4 50.9 -68.1 -47.1 5.9 -13.2 -0.2 33 33 A E H ><5S+ 0 0 92 -4,-2.5 3,-0.5 1,-0.2 -2,-0.2 0.884 117.8 39.8 -58.0 -40.3 6.3 -16.7 1.2 34 34 A E H 3<5S+ 0 0 181 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.748 103.5 69.3 -80.5 -25.6 5.9 -18.1 -2.3 35 35 A Q H 3<5S- 0 0 130 -4,-1.7 -1,-0.2 -5,-0.3 -2,-0.2 0.640 131.8 -86.2 -67.0 -13.2 8.0 -15.4 -3.8 36 36 A G T <<5S+ 0 0 54 -4,-0.6 2,-0.8 -3,-0.5 -3,-0.2 0.538 82.1 144.1 117.0 14.5 11.0 -16.9 -2.0 37 37 A M < + 0 0 9 -5,-2.3 -1,-0.2 -6,-0.1 -2,-0.1 -0.770 7.0 156.4 -90.2 109.1 10.7 -15.3 1.4 38 38 A K + 0 0 187 -2,-0.8 -1,-0.1 -4,-0.0 -5,-0.1 -0.023 49.3 86.5-119.6 27.8 11.7 -17.7 4.1 39 39 A N > - 0 0 81 1,-0.1 4,-1.8 0, 0.0 5,-0.2 -0.962 67.1-141.1-131.4 147.7 12.7 -15.2 6.8 40 40 A P H > S+ 0 0 87 0, 0.0 4,-3.2 0, 0.0 5,-0.4 0.936 102.5 52.7 -69.8 -48.8 10.7 -13.3 9.5 41 41 A E H > S+ 0 0 154 2,-0.2 4,-2.7 3,-0.2 5,-0.2 0.917 111.2 48.5 -54.0 -47.3 12.5 -10.0 9.1 42 42 A E H > S+ 0 0 91 2,-0.2 4,-2.6 3,-0.2 5,-0.3 0.986 117.5 38.0 -57.3 -65.2 11.9 -10.0 5.4 43 43 A I H X S+ 0 0 19 -4,-1.8 4,-3.2 1,-0.2 5,-0.4 0.946 118.4 49.5 -51.9 -55.6 8.2 -10.8 5.5 44 44 A E H X S+ 0 0 107 -4,-3.2 4,-2.9 -5,-0.2 -1,-0.2 0.891 111.8 51.1 -51.9 -43.4 7.6 -8.6 8.6 45 45 A R H X S+ 0 0 161 -4,-2.7 4,-2.6 -5,-0.4 -2,-0.2 0.981 116.1 37.7 -59.1 -61.0 9.4 -5.8 6.9 46 46 A K H X S+ 0 0 77 -4,-2.6 4,-2.5 2,-0.2 -2,-0.2 0.960 119.7 47.7 -56.0 -56.0 7.4 -5.8 3.7 47 47 A V H X S+ 0 0 8 -4,-3.2 4,-3.2 -5,-0.3 5,-0.2 0.927 111.4 51.3 -51.4 -51.2 4.1 -6.6 5.4 48 48 A E H X S+ 0 0 107 -4,-2.9 4,-2.6 -5,-0.4 5,-0.2 0.944 110.3 47.9 -52.3 -54.4 4.7 -3.9 8.0 49 49 A I H X S+ 0 0 73 -4,-2.6 4,-2.4 -5,-0.2 -1,-0.2 0.878 114.2 48.6 -55.3 -40.2 5.4 -1.3 5.3 50 50 A N H X S+ 0 0 20 -4,-2.5 4,-3.1 -5,-0.2 5,-0.3 0.965 109.8 49.3 -65.4 -54.2 2.3 -2.4 3.4 51 51 A R H X S+ 0 0 113 -4,-3.2 4,-2.5 1,-0.2 -2,-0.2 0.901 115.0 45.8 -52.0 -45.3 0.0 -2.3 6.4 52 52 A K H X S+ 0 0 126 -4,-2.6 4,-2.5 -5,-0.2 -1,-0.2 0.922 113.0 49.7 -65.2 -45.4 1.3 1.2 7.3 53 53 A R H X S+ 0 0 160 -4,-2.4 4,-1.9 -5,-0.2 -2,-0.2 0.959 114.7 43.0 -58.4 -54.7 1.0 2.4 3.7 54 54 A L H X S+ 0 0 28 -4,-3.1 4,-2.3 2,-0.2 6,-0.3 0.940 112.7 53.0 -57.5 -50.5 -2.6 1.1 3.3 55 55 A E H <>S+ 0 0 65 -4,-2.5 5,-2.8 -5,-0.3 6,-1.2 0.907 114.3 42.1 -52.0 -46.4 -3.7 2.4 6.7 56 56 A V H ><5S+ 0 0 89 -4,-2.5 3,-0.9 4,-0.2 -1,-0.3 0.755 110.9 58.1 -73.0 -25.0 -2.4 5.9 5.9 57 57 A D H 3<5S+ 0 0 127 -4,-1.9 -2,-0.2 1,-0.2 -1,-0.2 0.829 106.3 47.5 -73.4 -33.0 -3.8 5.6 2.4 58 58 A Y T 3<5S- 0 0 28 -4,-2.3 -1,-0.2 -5,-0.1 -2,-0.2 0.076 117.0-112.2 -95.2 23.0 -7.3 5.0 3.8 59 59 A G T < 5S+ 0 0 62 -3,-0.9 -3,-0.2 -5,-0.1 -2,-0.1 0.783 87.2 121.5 52.1 28.0 -6.9 8.0 6.1 60 60 A L < 0 0 47 -5,-2.8 -4,-0.2 -6,-0.3 -1,-0.1 0.723 360.0 360.0 -90.2 -25.6 -7.0 5.4 8.9 61 61 A S 0 0 108 -6,-1.2 -5,-0.2 -9,-0.1 -6,-0.1 0.446 360.0 360.0-129.0 360.0 -3.6 6.4 10.3