==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=31-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER IMMUNE SYSTEM/DNA 22-MAY-06 2H3C . COMPND 2 MOLECULE: CCDA; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR T.MADL,L.VAN MELDEREN,M.RESPONDEK,M.OBERER,W.KELLER, . 144 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 9448.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 81 56.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 6.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 21 14.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 35 24.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 5 3.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 216 0, 0.0 82,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 82.7 5.8 -13.0 14.1 2 2 A K - 0 0 116 81,-0.2 2,-0.6 1,-0.1 81,-0.3 0.484 360.0-111.6 71.8 140.7 4.5 -10.2 11.8 3 3 A Q E -A 82 0A 63 79,-1.6 79,-2.6 77,-0.1 2,-0.9 -0.924 19.5-134.8-112.3 120.4 1.1 -10.2 10.2 4 4 A R E +A 81 0A 188 -2,-0.6 2,-0.6 77,-0.3 77,-0.2 -0.606 27.1 178.0 -77.9 109.1 0.6 -10.6 6.5 5 5 A I E +A 80 0A 2 75,-1.2 75,-3.0 -2,-0.9 2,-0.4 -0.945 8.1 178.0-110.7 117.2 -1.9 -8.1 5.3 6 6 A T E -A 79 0A 36 -2,-0.6 2,-0.7 73,-0.3 73,-0.3 -0.974 25.7-155.0-133.1 134.4 -2.4 -8.2 1.6 7 7 A V E -A 78 0A 5 71,-2.1 2,-2.8 -2,-0.4 71,-1.8 -0.868 21.1-140.9 -99.7 111.7 -4.7 -6.3 -0.8 8 8 A T E +A 77 0A 64 -2,-0.7 69,-0.3 69,-0.2 -1,-0.0 -0.351 61.3 118.7 -71.6 67.9 -5.3 -8.4 -3.9 9 9 A V E -A 76 0A 10 -2,-2.8 67,-3.8 67,-1.0 2,-0.1 0.487 40.4-174.1 -99.0-120.5 -5.1 -5.5 -6.4 10 10 A D S >S+ 0 0 63 65,-0.3 5,-1.2 -3,-0.0 -1,-0.1 -0.643 84.7 12.8 157.6 -85.1 -2.6 -5.0 -9.2 11 11 A S T 5S+ 0 0 72 -2,-0.1 2,-3.5 3,-0.1 5,-0.1 0.250 85.5 120.3-102.0 12.4 -3.0 -1.6 -10.8 12 12 A D T 5S- 0 0 58 1,-0.2 2,-1.2 3,-0.0 93,-0.2 -0.289 107.2 -83.1 -73.4 60.4 -5.2 -0.1 -8.1 13 13 A S T >5S+ 0 0 29 -2,-3.5 4,-1.4 1,-0.1 3,-0.5 0.158 118.7 103.1 61.5 -23.5 -2.5 2.5 -7.6 14 14 A Y H >>5S+ 0 0 9 -2,-1.2 4,-1.4 1,-0.2 3,-0.6 0.934 73.6 53.5 -48.5 -60.6 -0.8 -0.1 -5.4 15 15 A Q H 3> S+ 0 0 57 -3,-0.5 4,-1.6 2,-0.2 -1,-0.2 0.931 101.8 52.8 -59.3 -49.5 2.8 2.5 -8.4 17 17 A L H XX>S+ 0 0 0 -4,-1.4 4,-1.8 -3,-0.6 5,-0.7 0.950 119.4 33.4 -51.6 -56.3 3.8 2.9 -4.7 18 18 A K H 3<5S+ 0 0 58 -4,-1.4 -1,-0.2 1,-0.2 5,-0.2 0.804 112.3 65.6 -70.4 -28.4 6.1 -0.1 -4.7 19 19 A A H 3<5S+ 0 0 71 -4,-2.3 -1,-0.2 -5,-0.3 -2,-0.2 0.762 105.4 43.8 -64.7 -26.0 6.9 0.8 -8.3 20 20 A Y H <<5S- 0 0 29 -4,-1.6 -2,-0.2 -3,-0.7 -1,-0.2 0.895 139.0 -69.3 -87.8 -41.2 8.6 3.9 -7.1 21 21 A D T <5S+ 0 0 126 -4,-1.8 -3,-0.2 -5,-0.2 -2,-0.1 0.395 104.1 77.6 157.2 35.9 10.4 2.3 -4.1 22 22 A V < - 0 0 14 -5,-0.7 2,-3.8 43,-0.1 -3,-0.2 -0.557 55.9-150.0-167.6 96.0 8.2 1.2 -1.3 23 23 A N - 0 0 108 -5,-0.2 2,-2.3 1,-0.2 -8,-0.1 -0.296 59.6 -98.3 -67.3 66.2 6.1 -2.0 -1.1 24 24 A I S >>S+ 0 0 2 -2,-3.8 4,-2.5 -10,-0.2 5,-0.5 0.261 90.0 127.3 36.3 -6.8 3.6 -0.2 1.2 25 25 A S H >5S+ 0 0 57 -2,-2.3 4,-1.0 1,-0.2 -1,-0.2 0.901 89.0 20.1 -38.4 -61.7 5.1 -1.7 4.3 26 26 A G H >5S+ 0 0 8 2,-0.1 4,-2.0 3,-0.1 -1,-0.2 0.825 126.2 56.1 -79.8 -33.3 5.6 1.7 6.0 27 27 A L H >5S+ 0 0 14 2,-0.2 4,-4.2 3,-0.2 5,-0.3 0.984 108.5 44.0 -62.4 -62.0 3.1 3.6 3.8 28 28 A V H X5S+ 0 0 0 -4,-2.5 4,-4.1 1,-0.2 -3,-0.1 0.957 119.2 42.0 -46.1 -68.5 0.0 1.3 4.5 29 29 A S H X> + 0 0 41 51,-0.2 3,-0.8 1,-0.1 4,-0.8 -0.370 59.6 66.2 84.6-166.4 9.5 10.1 4.3 65 65 A F T 34 S- 0 0 134 1,-0.2 -1,-0.1 2,-0.1 -43,-0.1 -0.344 121.6 -41.2 55.0-102.3 11.4 7.1 2.7 66 66 A A T 34 S+ 0 0 29 -2,-0.6 48,-0.4 48,-0.1 -1,-0.2 -0.323 125.4 55.2-158.0 64.5 11.4 8.2 -1.0 67 67 A D T <4 + 0 0 7 -3,-0.8 46,-3.8 48,-0.4 -2,-0.1 0.254 62.6 175.6-155.4 -61.6 8.2 9.7 -2.1 68 68 A E < - 0 0 5 -4,-0.8 45,-0.4 44,-0.2 2,-0.4 0.201 38.4 -98.2 61.2 173.0 7.0 12.7 -0.0 69 69 A N B +B 61 0B 6 -8,-0.8 -8,-1.2 43,-0.1 -9,-0.4 -0.766 48.4 168.0-132.5 87.2 4.0 14.9 -0.7 70 70 A K - 0 0 18 41,-0.4 2,-0.7 -2,-0.4 -11,-0.1 -0.498 40.5 -99.7 -96.3 167.4 4.8 18.2 -2.5 71 71 A D 0 0 1 -13,-0.6 -15,-1.4 -2,-0.2 -14,-0.3 -0.796 360.0 360.0 -93.7 116.2 2.5 20.7 -4.2 72 72 A W 0 0 9 -2,-0.7 -22,-0.4 -17,-0.1 -25,-0.1 -0.330 360.0 360.0 166.7 360.0 2.3 20.4 -8.0 73 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 74 101 B M 0 0 227 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 144.8 -4.4 -11.6 -13.2 75 102 B K - 0 0 147 -65,-0.1 2,-0.6 1,-0.0 -65,-0.3 -0.381 360.0-127.3 -76.4 157.5 -4.7 -9.6 -10.0 76 103 B Q E -A 9 0A 76 -67,-3.8 -67,-1.0 -2,-0.1 2,-0.7 -0.920 10.5-144.0-113.6 116.5 -1.6 -8.9 -7.8 77 104 B R E -A 8 0A 130 -2,-0.6 2,-0.5 -69,-0.3 -69,-0.2 -0.653 18.8-168.3 -79.1 113.9 -1.7 -9.8 -4.2 78 105 B I E -A 7 0A 4 -71,-1.8 -71,-2.1 -2,-0.7 2,-0.5 -0.911 4.5-171.5-106.0 122.6 0.2 -7.1 -2.3 79 106 B T E -A 6 0A 54 -2,-0.5 2,-0.8 -73,-0.3 -73,-0.3 -0.952 17.7-167.9-125.5 123.8 1.0 -7.9 1.3 80 107 B V E -A 5 0A 3 -75,-3.0 2,-1.7 -2,-0.5 -75,-1.2 -0.883 25.5-139.9-101.8 104.1 2.5 -5.6 4.0 81 108 B T E +A 4 0A 55 -2,-0.8 -77,-0.3 -77,-0.2 4,-0.2 -0.500 40.2 161.4 -70.2 89.8 3.5 -8.0 6.9 82 109 B V E +A 3 0A 0 -79,-2.6 -79,-1.6 -2,-1.7 -1,-0.1 0.570 29.6 128.3 -82.7-131.8 2.4 -5.8 9.8 83 110 B D S S+ 0 0 75 -81,-0.3 -81,-0.2 1,-0.1 -1,-0.1 0.363 98.2 38.2 86.3 -3.4 1.7 -7.0 13.4 84 111 B S S S+ 0 0 70 -81,-0.1 -1,-0.1 -3,-0.0 -2,-0.1 0.498 105.4 58.5-137.0 -59.3 4.1 -4.1 14.3 85 112 B D S S- 0 0 65 -4,-0.2 -59,-0.1 1,-0.1 -3,-0.0 0.939 109.9 -85.6 -46.2 -91.6 3.5 -1.0 12.1 86 113 B S S > S+ 0 0 32 -50,-0.0 4,-0.5 -53,-0.0 -50,-0.1 0.157 87.1 116.5 179.1 36.5 -0.2 0.1 12.5 87 114 B Y H > + 0 0 10 2,-0.2 4,-1.6 1,-0.1 3,-0.4 0.875 64.2 67.8 -82.2 -46.2 -2.3 -2.0 10.0 88 115 B Q H > S+ 0 0 101 1,-0.2 4,-2.3 2,-0.2 -1,-0.1 0.797 94.6 61.0 -48.8 -34.7 -4.5 -3.9 12.5 89 116 B L H > S+ 0 0 67 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.965 102.3 47.4 -59.9 -56.9 -6.3 -0.7 13.5 90 117 B L H X>S+ 0 0 0 -4,-0.5 5,-2.5 -3,-0.4 4,-1.9 0.902 121.9 37.8 -53.5 -40.6 -7.7 0.3 10.1 91 118 B K H <5S+ 0 0 71 -4,-1.6 -1,-0.3 3,-0.3 5,-0.2 0.780 107.1 67.3 -79.2 -26.9 -9.0 -3.3 9.7 92 119 B A H <5S+ 0 0 71 -4,-2.3 -2,-0.2 -5,-0.3 -1,-0.2 0.806 108.4 38.8 -62.0 -29.8 -9.8 -3.3 13.4 93 120 B Y H <5S- 0 0 53 -4,-1.7 -2,-0.2 -3,-0.2 -1,-0.2 0.904 138.6 -75.4 -88.0 -44.1 -12.5 -0.8 12.6 94 121 B D T <5S+ 0 0 95 -4,-1.9 -3,-0.3 -5,-0.2 2,-0.2 0.390 105.4 73.9 160.2 15.8 -13.6 -2.3 9.2 95 122 B V < + 0 0 22 -5,-2.5 -3,-0.2 -6,-0.2 -2,-0.1 -0.642 40.6 177.9-154.3 93.3 -11.1 -1.6 6.4 96 123 B N - 0 0 68 -5,-0.2 -1,-0.1 -2,-0.2 -4,-0.1 0.909 68.2 -69.5 -56.6 -97.6 -7.7 -3.3 6.1 97 124 B I S >>S+ 0 0 2 3,-0.1 4,-2.6 -91,-0.1 5,-0.7 0.430 95.5 114.0-142.7 -1.3 -6.3 -1.8 2.9 98 125 B S H >5S+ 0 0 71 1,-0.2 4,-1.0 2,-0.2 5,-0.1 0.921 106.9 11.0 -39.3 -64.5 -8.2 -3.0 -0.1 99 126 B G H >5S+ 0 0 10 2,-0.2 4,-1.6 3,-0.1 -1,-0.2 0.766 130.2 60.8 -85.2 -26.6 -9.6 0.5 -0.8 100 127 B L H >5S+ 0 0 7 2,-0.2 4,-3.8 3,-0.2 5,-0.3 0.980 105.9 44.0 -61.8 -61.1 -7.2 2.1 1.6 101 128 B V H X5S+ 0 0 0 -4,-2.6 4,-4.3 1,-0.2 5,-0.3 0.961 116.0 45.4 -49.0 -66.4 -4.0 1.0 -0.1 102 129 B S H X