==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-SEP-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER CELL ADHESION 25-APR-13 4KDV . COMPND 2 MOLECULE: ANTIFREEZE PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: MARINOMONAS PRIMORYENSIS; . AUTHOR S.GUO,C.P.GARNHAM,S.P.KARUNAN,R.L.CAMPBELL,J.S.ALLINGHAM,P.L . 102 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5121.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 58.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 2.9 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 35 34.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 5.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 7.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 5.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 2 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 3 A A 0 0 51 0, 0.0 2,-0.4 0, 0.0 89,-0.1 0.000 360.0 360.0 360.0 138.1 0.3 18.8 15.3 2 4 A T - 0 0 88 89,-0.1 34,-2.5 82,-0.1 35,-0.2 -0.842 360.0-119.1-117.0 137.3 4.1 18.7 15.9 3 5 A A - 0 0 51 -2,-0.4 32,-0.2 32,-0.2 90,-0.1 -0.450 27.6-163.3 -73.7 143.3 6.9 18.5 13.3 4 6 A G - 0 0 18 30,-0.2 2,-0.4 -2,-0.1 30,-0.2 0.246 32.4 -77.6 -96.8-138.6 9.3 15.6 13.5 5 7 A T E -A 33 0A 83 28,-2.6 28,-2.1 29,-0.2 2,-0.5 -0.978 37.2-169.6-136.3 117.4 12.7 15.1 11.9 6 8 A V E +A 32 0A 10 88,-0.5 2,-0.3 -2,-0.4 90,-0.3 -0.944 11.1 176.9-107.3 126.4 13.1 14.2 8.3 7 9 A T E -A 31 0A 56 24,-2.0 24,-1.3 -2,-0.5 2,-0.4 -0.907 19.0-143.6-124.4 160.7 16.5 13.2 7.1 8 10 A V E -A 30 0A 23 88,-0.4 22,-0.3 -2,-0.3 3,-0.1 -0.988 17.6-132.2-126.8 129.5 17.8 12.1 3.7 9 11 A N - 0 0 74 20,-2.8 20,-0.0 -2,-0.4 2,-0.0 -0.143 46.2 -67.1 -69.5 170.7 20.4 9.4 3.2 10 12 A A - 0 0 54 1,-0.1 2,-1.2 3,-0.1 19,-0.2 -0.373 52.0-111.2 -58.6 142.1 23.4 9.7 0.9 11 13 A I S S- 0 0 1 87,-0.3 4,-0.4 -3,-0.1 5,-0.2 -0.685 91.1 -26.3 -82.3 96.1 22.4 9.8 -2.8 12 14 A T S > S- 0 0 32 -2,-1.2 3,-1.4 15,-0.4 5,-0.0 0.108 106.7 -57.4 62.2 169.8 23.9 6.4 -3.6 13 15 A S T 3 S+ 0 0 127 1,-0.3 -1,-0.2 2,-0.1 -3,-0.1 0.796 139.6 30.8 -44.0 -47.5 26.9 5.1 -1.5 14 16 A D T 3 S- 0 0 98 2,-0.3 -1,-0.3 -3,-0.1 -2,-0.1 0.496 105.9-116.6 -99.8 -6.4 29.2 8.0 -2.1 15 17 A D S < S+ 0 0 51 -3,-1.4 85,-2.0 -4,-0.4 2,-0.4 0.659 80.4 113.3 77.4 20.0 26.6 10.8 -2.5 16 18 A V E -c 100 0B 33 83,-0.2 2,-0.6 -5,-0.2 -1,-0.3 -0.951 61.2-142.4-121.6 139.0 27.7 11.3 -6.0 17 19 A I E -c 101 0B 1 83,-2.5 85,-2.6 -2,-0.4 2,-0.1 -0.946 25.9-168.6-100.4 116.5 25.7 10.7 -9.2 18 20 A N > - 0 0 54 -2,-0.6 4,-2.7 83,-0.2 5,-0.2 -0.446 38.9 -95.1 -98.6 172.5 28.0 9.4 -11.9 19 21 A A H > S+ 0 0 82 1,-0.2 4,-0.7 2,-0.2 53,-0.1 0.875 125.6 50.6 -57.5 -36.6 27.2 8.9 -15.6 20 22 A S H 4 S+ 0 0 93 2,-0.2 3,-0.4 1,-0.2 4,-0.4 0.885 112.6 45.2 -71.8 -42.8 26.2 5.3 -15.1 21 23 A E H >4 S+ 0 0 48 1,-0.2 3,-1.1 2,-0.2 47,-0.2 0.839 107.1 60.9 -58.1 -42.2 23.8 6.1 -12.2 22 24 A A H 3< S+ 0 0 27 -4,-2.7 -2,-0.2 1,-0.2 -1,-0.2 0.721 95.2 65.0 -58.4 -24.2 22.5 9.0 -14.3 23 25 A A T 3< S+ 0 0 89 -4,-0.7 -1,-0.2 -3,-0.4 -2,-0.2 0.749 112.3 11.1 -73.4 -26.2 21.4 6.4 -16.9 24 26 A G S < S- 0 0 36 -3,-1.1 44,-3.6 -4,-0.4 45,-0.3 -0.223 96.4 -43.4-130.5-145.6 18.8 4.7 -14.7 25 27 A T E - B 0 67A 97 42,-0.2 2,-0.4 43,-0.1 42,-0.2 -0.638 39.9-161.4 -97.3 149.4 16.7 4.7 -11.5 26 28 A V E - B 0 66A 9 40,-2.9 40,-2.8 -2,-0.2 2,-0.7 -0.997 17.0-133.3-134.4 125.8 18.1 5.7 -8.1 27 29 A A E - B 0 65A 57 -2,-0.4 2,-0.5 38,-0.2 -15,-0.4 -0.740 21.3-160.7 -79.2 114.7 16.4 4.8 -4.8 28 30 A V E + B 0 64A 1 36,-4.0 36,-3.3 -2,-0.7 2,-0.3 -0.869 19.2 173.2 -98.1 128.6 16.3 7.9 -2.6 29 31 A S E + B 0 63A 35 -2,-0.5 -20,-2.8 34,-0.3 2,-0.3 -0.810 11.7 142.3-133.1 170.0 15.8 7.1 1.1 30 32 A G E -AB 8 62A 1 32,-1.6 32,-1.7 -22,-0.3 2,-0.3 -0.958 40.8 -84.3 179.9-167.9 15.7 8.7 4.5 31 33 A T E -AB 7 61A 40 -24,-1.3 -24,-2.0 -2,-0.3 2,-0.3 -0.883 20.1-168.3-124.0 153.1 14.0 8.7 7.9 32 34 A A E +A 6 0A 2 28,-2.8 2,-0.3 -2,-0.3 -26,-0.2 -0.856 31.8 138.0-142.4 108.4 10.9 10.4 9.2 33 35 A T E +A 5 0A 68 -28,-2.1 -28,-2.6 -2,-0.3 3,-0.1 -0.857 26.7 43.3-142.5 169.7 10.4 10.3 13.0 34 36 A G S > S+ 0 0 44 -2,-0.3 3,-1.6 -30,-0.2 -29,-0.2 0.110 85.2 39.8 76.9 168.4 9.4 12.3 16.1 35 37 A G T 3 S- 0 0 50 1,-0.2 -1,-0.2 -31,-0.2 -32,-0.2 -0.284 126.7 -31.8 53.7-133.6 6.5 14.6 16.6 36 38 A D T 3 S+ 0 0 59 -34,-2.5 48,-0.5 -3,-0.1 -1,-0.2 0.211 95.3 132.2-101.4 12.1 3.3 13.5 14.9 37 39 A I < + 0 0 20 -3,-1.6 2,-0.3 -35,-0.2 -3,-0.2 -0.401 33.2 168.2 -61.1 143.4 5.0 11.7 12.0 38 40 A A > - 0 0 52 -5,-0.1 3,-2.0 -2,-0.0 18,-0.3 -0.966 40.0 -64.3-154.3 168.4 3.5 8.2 11.5 39 41 A E T 3 S+ 0 0 134 -2,-0.3 18,-0.2 1,-0.3 19,-0.1 -0.290 117.2 22.2 -59.7 135.6 3.3 5.3 9.2 40 42 A G T 3 S+ 0 0 43 16,-3.5 -1,-0.3 1,-0.4 17,-0.1 0.326 83.8 137.6 88.8 -5.8 1.6 6.0 5.9 41 43 A D < - 0 0 28 -3,-2.0 15,-2.5 15,-0.1 -1,-0.4 -0.457 60.2-106.3 -63.1 148.1 2.3 9.8 6.0 42 44 A T E -DE 55 82C 56 40,-0.6 40,-1.9 13,-0.2 2,-0.5 -0.596 24.4-156.1 -85.9 140.2 3.4 11.0 2.6 43 45 A V E -DE 54 81C 0 11,-2.0 11,-1.9 -2,-0.3 2,-0.4 -0.981 14.0-165.7-110.3 125.3 6.9 12.0 1.8 44 46 A T E -DE 53 80C 44 36,-2.7 36,-1.9 -2,-0.5 2,-0.4 -0.959 7.4-177.0-121.7 124.0 7.2 14.5 -1.2 45 47 A L E -DE 52 79C 0 7,-3.6 7,-3.0 -2,-0.4 2,-0.6 -0.978 13.6-156.6-120.8 125.0 10.4 15.3 -3.0 46 48 A E E +D 51 0C 115 32,-0.8 2,-0.5 -2,-0.4 32,-0.3 -0.896 19.3 174.8 -99.5 119.3 10.8 17.8 -5.9 47 49 A I E > S-D 50 0C 0 3,-2.7 3,-1.1 -2,-0.6 30,-0.1 -0.941 72.8 -16.7-130.6 106.3 13.9 16.9 -8.0 48 50 A N T 3 S- 0 0 78 -2,-0.5 -1,-0.1 28,-0.3 3,-0.1 0.861 128.1 -54.0 66.7 36.3 14.5 18.9 -11.1 49 51 A G T 3 S+ 0 0 61 1,-0.3 2,-0.4 21,-0.0 -1,-0.2 0.218 114.3 119.7 80.1 -13.5 10.9 20.3 -11.0 50 52 A E E < -D 47 0C 98 -3,-1.1 -3,-2.7 20,-0.0 2,-0.5 -0.705 61.4-134.7 -87.5 134.3 9.5 16.7 -10.9 51 53 A T E -D 46 0C 70 -2,-0.4 2,-0.4 -5,-0.2 -5,-0.2 -0.774 22.9-175.9 -94.0 124.4 7.4 15.7 -7.9 52 54 A Y E -D 45 0C 33 -7,-3.0 -7,-3.6 -2,-0.5 2,-0.3 -0.944 7.7-176.5-121.7 139.3 8.3 12.3 -6.4 53 55 A T E +D 44 0C 70 -2,-0.4 2,-0.2 -9,-0.2 -9,-0.2 -0.948 15.7 150.4-142.8 150.6 6.3 10.8 -3.6 54 56 A T E -D 43 0C 34 -11,-1.9 -11,-2.0 -2,-0.3 2,-0.3 -0.817 35.9-105.7-156.2-165.8 6.2 7.8 -1.2 55 57 A T E -D 42 0C 72 -13,-0.3 8,-0.4 8,-0.3 2,-0.4 -0.920 29.5 -99.5-133.3 163.6 5.0 7.1 2.3 56 58 A V - 0 0 2 -15,-2.5 -16,-3.5 -18,-0.3 6,-0.2 -0.670 37.8-140.8 -81.7 133.1 6.5 6.5 5.7 57 59 A D > - 0 0 66 4,-2.9 3,-1.5 -2,-0.4 -16,-0.1 -0.131 32.3 -90.6 -86.0-174.8 6.9 2.9 6.8 58 60 A A T 3 S+ 0 0 80 1,-0.3 -19,-0.1 2,-0.1 -1,-0.1 0.622 126.0 52.9 -77.1 -15.4 6.3 1.4 10.3 59 61 A N T 3 S- 0 0 113 2,-0.1 -1,-0.3 -26,-0.0 3,-0.1 0.135 120.7-103.9-102.7 16.7 9.9 1.9 11.2 60 62 A G S < S+ 0 0 12 -3,-1.5 -28,-2.8 1,-0.2 2,-0.3 0.842 82.2 118.6 65.8 34.9 10.0 5.6 10.2 61 63 A E E -B 31 0A 85 -30,-0.3 -4,-2.9 2,-0.0 2,-0.3 -0.833 40.5-167.4-124.1 163.3 11.9 5.2 6.9 62 64 A W E -B 30 0A 7 -32,-1.7 -32,-1.6 -2,-0.3 2,-0.3 -0.964 3.9-169.7-144.6 159.0 11.0 6.0 3.4 63 65 A S E -B 29 0A 64 -8,-0.4 2,-0.3 -2,-0.3 -8,-0.3 -0.957 5.3-178.3-150.2 134.8 12.3 5.1 -0.1 64 66 A V E -B 28 0A 15 -36,-3.3 -36,-4.0 -2,-0.3 2,-0.6 -0.996 26.6-123.7-134.3 147.0 11.5 6.5 -3.5 65 67 A D E -B 27 0A 110 -2,-0.3 2,-0.3 -38,-0.3 -38,-0.2 -0.795 32.9-177.8 -86.8 119.8 12.6 5.8 -7.1 66 68 A V E -B 26 0A 1 -40,-2.8 -40,-2.9 -2,-0.6 2,-0.3 -0.845 34.0-106.5-116.7 148.0 13.9 8.8 -8.8 67 69 A A E >> -B 25 0A 32 -2,-0.3 4,-1.3 -42,-0.2 3,-1.1 -0.590 26.3-135.9 -71.8 133.5 15.2 9.1 -12.4 68 70 A G H 3> S+ 0 0 1 -44,-3.6 4,-1.6 -2,-0.3 -45,-0.1 0.733 102.7 61.2 -67.6 -22.1 18.9 9.4 -12.2 69 71 A S H 3> S+ 0 0 71 -45,-0.3 4,-0.6 2,-0.2 -1,-0.3 0.713 100.4 54.1 -74.0 -26.0 18.9 12.2 -14.8 70 72 A D H <> S+ 0 0 27 -3,-1.1 4,-1.0 2,-0.2 3,-0.4 0.897 110.1 47.4 -70.6 -41.2 16.7 14.3 -12.5 71 73 A L H < S+ 0 0 0 -4,-1.3 -2,-0.2 1,-0.2 3,-0.2 0.821 107.6 55.3 -65.5 -37.1 19.4 13.8 -9.8 72 74 A A H < S+ 0 0 34 -4,-1.6 -1,-0.2 1,-0.2 -2,-0.2 0.703 114.0 42.1 -68.3 -19.2 22.2 14.7 -12.3 73 75 A A H < S+ 0 0 63 -4,-0.6 2,-0.4 -3,-0.4 -2,-0.2 0.571 115.1 50.5-104.1 -14.9 20.4 18.0 -13.0 74 76 A D < - 0 0 42 -4,-1.0 -1,-0.2 -3,-0.2 3,-0.0 -0.962 56.1-177.5-130.9 113.5 19.3 18.9 -9.5 75 77 A T S S+ 0 0 74 -2,-0.4 24,-2.1 -3,-0.1 2,-0.3 0.354 70.8 34.5 -91.0 3.1 22.0 18.9 -6.7 76 78 A A E + F 0 98C 43 22,-0.2 2,-0.3 2,-0.0 -28,-0.3 -0.982 60.3 158.3-159.1 141.7 19.7 19.8 -3.8 77 79 A F E - F 0 97C 11 20,-1.7 20,-1.9 -2,-0.3 2,-0.4 -0.981 31.5-121.2-160.3 155.7 16.1 19.1 -2.8 78 80 A D E - F 0 96C 78 -2,-0.3 -32,-0.8 -32,-0.3 2,-0.5 -0.840 14.0-149.1 -99.3 141.9 13.8 19.1 0.3 79 81 A A E -EF 45 95C 0 16,-2.2 16,-2.8 -2,-0.4 2,-0.4 -0.956 19.8-165.1-104.4 130.0 11.9 16.0 1.4 80 82 A V E -EF 44 94C 37 -36,-1.9 -36,-2.7 -2,-0.5 2,-0.5 -0.981 6.8-159.9-125.3 125.6 8.6 17.1 3.1 81 83 A V E -EF 43 93C 0 12,-2.9 12,-2.3 -2,-0.4 2,-0.6 -0.919 8.4-149.5-108.3 131.4 6.5 14.9 5.2 82 84 A T E +EF 42 92C 53 -40,-1.9 -40,-0.6 -2,-0.5 2,-0.3 -0.902 24.7 171.2-107.0 122.3 2.8 15.8 5.8 83 85 A S E - F 0 91C 2 8,-3.2 8,-2.8 -2,-0.6 2,-0.3 -0.796 16.2-159.0-124.3 163.8 1.4 14.7 9.2 84 86 A S E - F 0 90C 55 -48,-0.5 6,-0.3 6,-0.3 2,-0.1 -0.960 14.9-128.1-136.7 160.1 -1.7 15.2 11.2 85 87 A D > - 0 0 33 4,-2.6 3,-1.8 -2,-0.3 6,-0.0 -0.373 44.1 -87.9 -92.5 179.4 -2.7 14.8 14.7 86 88 A A T 3 S+ 0 0 117 1,-0.3 -1,-0.0 -2,-0.1 -2,-0.0 0.806 128.6 53.6 -56.7 -34.4 -5.7 12.9 16.1 87 89 A A T 3 S- 0 0 87 2,-0.1 -1,-0.3 1,-0.0 0, 0.0 0.427 123.6-103.8 -80.9 -0.5 -8.0 16.0 15.7 88 90 A G S < S+ 0 0 45 -3,-1.8 -2,-0.1 1,-0.3 2,-0.1 0.321 70.2 147.0 94.3 -6.5 -7.0 16.3 12.1 89 91 A N - 0 0 91 -5,-0.1 -4,-2.6 1,-0.1 -1,-0.3 -0.466 37.8-141.0 -68.5 138.6 -4.6 19.2 12.3 90 92 A T E -F 84 0C 106 -6,-0.3 2,-0.3 -2,-0.1 -6,-0.3 -0.629 19.7-176.1-102.8 153.5 -1.7 18.9 9.8 91 93 A V E -F 83 0C 27 -8,-2.8 -8,-3.2 -2,-0.2 2,-0.4 -0.991 15.9-141.2-142.4 148.6 2.0 19.7 9.9 92 94 A D E -F 82 0C 93 -2,-0.3 2,-0.4 -10,-0.2 -10,-0.2 -0.948 11.1-165.4-108.3 135.3 4.9 19.6 7.4 93 95 A T E -F 81 0C 7 -12,-2.3 -12,-2.9 -2,-0.4 2,-0.4 -0.985 10.7-158.6-119.7 126.8 8.3 18.4 8.4 94 96 A T E -F 80 0C 79 -2,-0.4 -88,-0.5 -14,-0.2 2,-0.3 -0.850 12.4-178.4-113.2 136.3 11.2 19.3 6.0 95 97 A G E -F 79 0C 7 -16,-2.8 -16,-2.2 -2,-0.4 2,-0.3 -0.905 18.2-141.6-120.7 155.1 14.6 17.6 5.6 96 98 A S E -F 78 0C 88 -2,-0.3 -88,-0.4 -90,-0.3 2,-0.3 -0.882 14.1-171.7-118.9 153.5 17.2 18.8 3.1 97 99 A S E -F 77 0C 12 -20,-1.9 -20,-1.7 -2,-0.3 2,-0.3 -0.988 5.7-176.1-139.0 143.1 19.7 17.0 0.9 98 100 A T E +F 76 0C 96 -2,-0.3 2,-0.3 -22,-0.2 -87,-0.3 -0.947 11.1 167.1-122.1 156.7 22.6 17.9 -1.3 99 101 A H - 0 0 6 -24,-2.1 2,-0.3 -2,-0.3 -83,-0.2 -0.915 27.1-118.4-149.4 178.9 24.6 15.7 -3.5 100 102 A T E -c 16 0B 81 -85,-2.0 -83,-2.5 -2,-0.3 2,-0.4 -0.863 12.0-141.1-122.6 159.3 27.2 16.1 -6.2 101 103 A V E c 17 0B 59 -2,-0.3 -83,-0.2 -85,-0.2 -85,-0.0 -0.972 360.0 360.0-121.7 127.7 27.2 15.0 -9.9 102 104 A D 0 0 158 -85,-2.6 -83,-0.1 -2,-0.4 -86,-0.0 -0.683 360.0 360.0 -81.7 360.0 30.4 13.7 -11.5