==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=15-JAN-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER LIGASE 30-JAN-09 2KEO . COMPND 2 MOLECULE: PROBABLE E3 UBIQUITIN-PROTEIN LIGASE HERC2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR A.LEMAK,A.GUTMANAS,C.FARES,H.QUYANG,Y.LI,G.MONTELIONE,C.ARRO . 92 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6596.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 67 72.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 3.3 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 10.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 10.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 15 16.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 28 30.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 21 A E 0 0 222 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -40.4 5.2 -2.0 -0.2 2 22 A K - 0 0 136 2,-0.0 2,-0.7 0, 0.0 0, 0.0 -0.929 360.0-117.5-128.0 151.2 5.8 -5.8 0.0 3 23 A V - 0 0 82 -2,-0.3 2,-0.7 73,-0.1 73,-0.1 -0.811 20.5-141.8 -94.0 112.8 4.0 -8.7 -1.8 4 24 A T - 0 0 54 -2,-0.7 73,-2.1 71,-0.1 2,-0.7 -0.700 19.5-155.4 -71.0 109.1 2.2 -11.1 0.5 5 25 A L E -a 77 0A 60 -2,-0.7 2,-0.4 71,-0.2 73,-0.2 -0.849 8.0-166.1 -98.5 108.8 2.9 -14.6 -1.1 6 26 A V E -a 78 0A 5 71,-2.3 73,-2.0 -2,-0.7 2,-0.2 -0.792 6.3-157.8 -94.4 132.8 0.2 -17.2 -0.3 7 27 A R > - 0 0 61 -2,-0.4 4,-1.9 71,-0.2 73,-0.1 -0.551 34.8-102.9-102.2 171.2 1.0 -20.9 -1.0 8 28 A I H > S+ 0 0 86 2,-0.2 4,-2.0 1,-0.2 5,-0.2 0.843 123.5 59.0 -60.7 -34.1 -1.3 -23.9 -1.6 9 29 A A H > S+ 0 0 54 2,-0.2 4,-2.5 1,-0.2 5,-0.3 0.939 106.6 45.7 -58.4 -49.8 -0.4 -24.9 2.1 10 30 A D H > S+ 0 0 78 1,-0.2 4,-2.1 2,-0.2 5,-0.2 0.888 110.5 54.9 -60.1 -43.0 -1.8 -21.6 3.4 11 31 A L H X S+ 0 0 31 -4,-1.9 4,-0.7 2,-0.2 10,-0.4 0.897 115.0 38.2 -58.2 -45.8 -4.9 -21.9 1.3 12 32 A E H X S+ 0 0 119 -4,-2.0 4,-1.0 2,-0.2 3,-0.4 0.945 119.2 43.5 -72.7 -53.0 -5.7 -25.4 2.7 13 33 A N H X S+ 0 0 118 -4,-2.5 4,-1.1 1,-0.2 -2,-0.2 0.795 109.5 56.5 -71.2 -29.9 -4.7 -25.0 6.4 14 34 A H H X>S+ 0 0 59 -4,-2.1 5,-2.4 -5,-0.3 4,-0.6 0.781 99.7 60.7 -73.5 -27.5 -6.4 -21.5 6.8 15 35 A N H ><5S+ 0 0 84 -4,-0.7 3,-0.6 -3,-0.4 -1,-0.2 0.888 105.1 48.2 -61.3 -39.3 -9.7 -23.1 5.6 16 36 A N H 3<5S+ 0 0 149 -4,-1.0 -2,-0.2 1,-0.2 -1,-0.2 0.802 103.4 61.5 -68.6 -32.3 -9.4 -25.3 8.7 17 37 A D H 3<5S- 0 0 115 -4,-1.1 -1,-0.2 2,-0.2 -2,-0.2 0.687 129.4-100.1 -65.8 -19.5 -8.7 -22.1 10.7 18 38 A G T <<5S+ 0 0 38 -4,-0.6 2,-0.7 -3,-0.6 -3,-0.2 0.426 93.6 110.9 111.7 4.1 -12.2 -21.0 9.6 19 39 A G < - 0 0 2 -5,-2.4 2,-0.6 13,-0.1 -2,-0.2 -0.873 52.7-158.8-111.9 95.9 -11.2 -18.7 6.7 20 40 A F + 0 0 87 -2,-0.7 12,-1.8 -5,-0.2 11,-1.4 -0.662 21.0 178.2 -75.8 116.6 -12.3 -20.2 3.4 21 41 A W E -B 30 0A 20 -2,-0.6 2,-0.3 -10,-0.4 9,-0.2 -0.434 13.2-157.6-104.7-179.8 -10.1 -18.5 0.7 22 42 A T E -B 29 0A 26 7,-1.1 7,-1.7 -2,-0.2 2,-0.6 -0.963 19.1-121.7-155.8 159.2 -9.8 -18.9 -3.1 23 43 A V E +B 28 0A 52 -2,-0.3 2,-0.3 5,-0.2 5,-0.2 -0.934 43.2 150.8-108.0 111.6 -7.3 -18.3 -5.9 24 44 A I E > +B 27 0A 29 3,-2.1 3,-1.3 -2,-0.6 54,-0.1 -0.990 66.3 3.8-140.6 135.5 -8.5 -15.9 -8.7 25 45 A D T 3 S- 0 0 126 -2,-0.3 3,-0.1 1,-0.3 -1,-0.1 0.763 128.2 -62.1 63.6 32.3 -6.5 -13.5 -10.9 26 46 A G T 3 S+ 0 0 40 1,-0.3 52,-1.6 51,-0.1 2,-0.3 0.707 120.6 103.2 66.4 20.8 -3.2 -14.7 -9.3 27 47 A K E < -BC 24 77A 72 -3,-1.3 -3,-2.1 50,-0.3 2,-0.5 -0.837 69.7-127.6-128.6 163.0 -4.6 -13.4 -6.0 28 48 A V E -BC 23 76A 0 48,-2.7 47,-2.1 -2,-0.3 48,-1.1 -0.977 25.9-171.6-119.3 119.3 -6.1 -14.9 -2.8 29 49 A Y E -BC 22 74A 13 -7,-1.7 -7,-1.1 -2,-0.5 2,-1.0 -0.850 29.1-116.1-112.3 148.1 -9.5 -13.5 -1.6 30 50 A D E > +B 21 0A 31 43,-1.7 4,-1.5 -2,-0.3 -9,-0.2 -0.736 32.8 175.2 -86.6 100.7 -11.4 -14.2 1.6 31 51 A I H > S+ 0 0 2 -11,-1.4 4,-2.6 -2,-1.0 5,-0.2 0.777 74.6 63.5 -76.5 -29.6 -14.6 -15.9 0.5 32 52 A K H > S+ 0 0 89 -12,-1.8 4,-0.9 1,-0.2 -1,-0.2 0.930 112.9 34.5 -61.6 -47.7 -15.8 -16.6 4.1 33 53 A D H > S+ 0 0 68 -13,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.848 114.1 61.5 -74.0 -36.1 -16.0 -12.9 4.9 34 54 A F H X S+ 0 0 0 -4,-1.5 4,-1.7 1,-0.2 3,-0.3 0.932 105.5 45.2 -52.6 -53.3 -17.1 -12.1 1.3 35 55 A Q H X S+ 0 0 77 -4,-2.6 4,-1.2 1,-0.2 -1,-0.2 0.781 106.8 60.2 -67.4 -28.5 -20.3 -14.2 1.7 36 56 A T H < S+ 0 0 64 -4,-0.9 4,-0.4 -5,-0.2 -1,-0.2 0.894 109.1 43.0 -64.0 -40.4 -21.0 -12.6 5.1 37 57 A Q H >< S+ 0 0 62 -4,-1.7 3,-0.7 -3,-0.3 6,-0.2 0.822 109.6 58.2 -72.5 -32.3 -21.2 -9.2 3.4 38 58 A S H 3< S+ 0 0 6 -4,-1.7 -2,-0.2 1,-0.2 -1,-0.2 0.763 103.7 52.3 -68.1 -27.3 -23.2 -10.8 0.6 39 59 A L T 3< S+ 0 0 146 -4,-1.2 2,-0.5 -5,-0.1 -1,-0.2 0.604 95.0 89.9 -80.7 -15.4 -25.8 -11.9 3.3 40 60 A T S X S- 0 0 66 -3,-0.7 3,-1.1 -4,-0.4 6,-0.2 -0.759 80.5-125.9 -90.2 124.7 -25.9 -8.2 4.5 41 61 A E T 3 S+ 0 0 149 -2,-0.5 3,-0.1 1,-0.2 -2,-0.1 -0.328 93.4 27.0 -64.3 148.0 -28.6 -5.9 2.8 42 62 A N T 3 S+ 0 0 155 1,-0.3 -1,-0.2 2,-0.0 2,-0.2 0.326 93.8 122.9 75.4 -3.6 -27.3 -2.6 1.2 43 63 A S S X S- 0 0 33 -3,-1.1 3,-1.6 -6,-0.2 4,-0.4 -0.600 75.8-119.6 -81.1 149.9 -23.9 -4.2 0.6 44 64 A I T 3 S+ 0 0 43 1,-0.3 3,-0.2 -2,-0.2 -1,-0.1 0.659 115.1 53.2 -62.0 -20.0 -22.6 -4.4 -3.0 45 65 A L T > S+ 0 0 0 -8,-0.2 3,-0.8 -5,-0.2 -1,-0.3 0.495 84.8 83.3 -95.1 -8.7 -22.5 -8.2 -2.7 46 66 A A G X S+ 0 0 27 -3,-1.6 3,-0.6 1,-0.3 -1,-0.2 0.742 89.1 54.6 -67.9 -25.8 -26.2 -8.5 -1.6 47 67 A Q G 3 S+ 0 0 131 -4,-0.4 -1,-0.3 -3,-0.2 3,-0.2 0.654 110.5 46.6 -75.7 -20.5 -27.2 -8.2 -5.3 48 68 A F G X S+ 0 0 36 -3,-0.8 3,-1.4 1,-0.1 -2,-0.2 0.174 82.1 105.3-102.9 12.8 -24.8 -11.3 -5.9 49 69 A A T < S+ 0 0 48 -3,-0.6 -1,-0.1 1,-0.3 -2,-0.1 0.742 75.3 55.8 -69.6 -26.2 -26.3 -13.2 -2.9 50 70 A G T 3 S+ 0 0 90 -3,-0.2 2,-0.3 -4,-0.2 -1,-0.3 0.470 101.9 76.6 -81.5 -3.9 -28.3 -15.6 -5.2 51 71 A E S < S- 0 0 89 -3,-1.4 -3,-0.0 1,-0.0 5,-0.0 -0.772 99.7 -90.2-108.1 150.5 -24.9 -16.5 -6.8 52 72 A D >> - 0 0 110 -2,-0.3 4,-2.7 1,-0.1 3,-0.9 -0.445 38.9-127.2 -56.0 124.7 -22.0 -18.7 -5.6 53 73 A P H 3> S+ 0 0 33 0, 0.0 4,-1.2 0, 0.0 -1,-0.1 0.765 108.6 52.2 -51.1 -33.5 -19.6 -16.4 -3.6 54 74 A V H 3> S+ 0 0 44 2,-0.2 4,-0.9 1,-0.2 -2,-0.0 0.882 115.7 40.3 -70.8 -38.9 -16.5 -17.5 -5.7 55 75 A V H <> S+ 0 0 65 -3,-0.9 4,-1.6 2,-0.2 3,-0.3 0.867 113.4 54.5 -74.1 -40.1 -18.4 -16.8 -9.0 56 76 A A H X S+ 0 0 0 -4,-2.7 4,-1.4 1,-0.2 -2,-0.2 0.755 101.8 59.7 -65.5 -29.3 -19.8 -13.5 -7.5 57 77 A L H X S+ 0 0 0 -4,-1.2 4,-1.8 -5,-0.3 -1,-0.2 0.881 104.0 49.8 -64.0 -41.8 -16.2 -12.5 -6.6 58 78 A E H X S+ 0 0 98 -4,-0.9 4,-1.9 -3,-0.3 -2,-0.2 0.876 110.9 48.7 -65.6 -40.8 -15.3 -12.7 -10.4 59 79 A A H X S+ 0 0 35 -4,-1.6 4,-1.7 2,-0.2 -1,-0.2 0.800 111.1 51.6 -66.4 -32.0 -18.4 -10.5 -11.2 60 80 A A H < S+ 0 0 0 -4,-1.4 -2,-0.2 2,-0.2 -1,-0.2 0.805 109.2 49.0 -75.1 -33.5 -17.3 -8.1 -8.4 61 81 A L H < S+ 0 0 42 -4,-1.8 -2,-0.2 1,-0.2 -1,-0.2 0.877 112.1 50.7 -67.7 -40.1 -13.7 -7.9 -10.0 62 82 A Q H < S+ 0 0 173 -4,-1.9 2,-0.4 -5,-0.1 -2,-0.2 0.863 98.3 74.2 -66.4 -41.5 -15.4 -7.2 -13.4 63 83 A F S X S- 0 0 102 -4,-1.7 4,-1.6 1,-0.1 -1,-0.0 -0.676 75.9-142.7 -87.5 127.7 -17.6 -4.4 -12.2 64 84 A E T 4 S+ 0 0 140 -2,-0.4 4,-0.2 1,-0.2 -1,-0.1 0.745 98.4 49.1 -61.8 -32.3 -15.8 -1.1 -11.5 65 85 A D T >4 S+ 0 0 90 1,-0.2 3,-1.0 2,-0.1 4,-0.3 0.953 114.9 42.1 -68.7 -51.4 -17.9 -0.2 -8.4 66 86 A T G >> S+ 0 0 0 1,-0.2 4,-0.6 2,-0.2 3,-0.6 0.638 97.9 73.6 -78.7 -16.8 -17.6 -3.5 -6.7 67 87 A R G 3< S+ 0 0 114 -4,-1.6 4,-0.4 1,-0.2 -1,-0.2 0.621 85.6 68.8 -75.0 -11.4 -13.8 -4.1 -7.4 68 88 A E G X4 S+ 0 0 108 -3,-1.0 3,-0.6 -4,-0.2 -1,-0.2 0.855 99.8 45.3 -75.3 -38.1 -13.0 -1.4 -4.7 69 89 A S T X> S+ 0 0 44 -3,-0.6 3,-1.2 -4,-0.3 4,-1.0 0.664 98.2 73.7 -77.6 -18.7 -14.2 -3.6 -1.8 70 90 A M H 3X S+ 0 0 4 -4,-0.6 4,-1.9 1,-0.3 -1,-0.2 0.749 85.6 65.9 -65.0 -24.2 -12.2 -6.6 -3.4 71 91 A H H <4 S+ 0 0 135 -3,-0.6 -1,-0.3 -4,-0.4 -2,-0.2 0.730 100.7 50.2 -64.4 -26.6 -9.1 -4.7 -2.1 72 92 A A H <4 S+ 0 0 82 -3,-1.2 -2,-0.2 -4,-0.2 -1,-0.2 0.819 113.2 44.0 -78.4 -36.0 -10.4 -5.5 1.4 73 93 A F H < S+ 0 0 7 -4,-1.0 -43,-1.7 -44,-0.1 2,-0.9 0.737 88.6 98.0 -83.7 -24.4 -10.9 -9.2 0.6 74 94 A C E < - C 0 29A 40 -4,-1.9 -45,-0.3 -45,-0.2 3,-0.1 -0.552 47.9-179.9 -72.0 101.3 -7.5 -9.7 -1.2 75 95 A V E - 0 0 58 -47,-2.1 2,-0.3 -2,-0.9 -1,-0.2 0.852 60.2 -59.4 -68.8 -37.7 -5.3 -11.2 1.6 76 96 A G E - C 0 28A 12 -48,-1.1 -48,-2.7 -3,-0.1 2,-0.4 -0.973 66.3 -54.3 178.0-171.7 -2.3 -11.2 -0.9 77 97 A Q E -aC 5 27A 75 -73,-2.1 -71,-2.3 -2,-0.3 2,-0.3 -0.747 47.5-130.2 -88.8 135.7 -0.9 -12.5 -4.2 78 98 A Y E +a 6 0A 37 -52,-1.6 2,-0.4 -2,-0.4 -71,-0.2 -0.703 26.1 179.4 -83.9 136.3 -0.8 -16.3 -4.9 79 99 A L - 0 0 36 -73,-2.0 -71,-0.2 -2,-0.3 -52,-0.0 -0.967 24.3-128.4-139.7 122.9 2.5 -17.8 -6.0 80 100 A E > - 0 0 103 -2,-0.4 4,-1.2 -73,-0.1 5,-0.2 -0.345 13.4-126.6 -70.7 145.0 2.7 -21.6 -6.7 81 101 A P H > S+ 0 0 81 0, 0.0 4,-0.5 0, 0.0 3,-0.2 0.924 114.1 42.6 -50.5 -47.6 5.5 -23.8 -5.1 82 102 A D H >4 S+ 0 0 120 1,-0.2 3,-0.5 2,-0.2 -2,-0.0 0.853 103.7 67.7 -67.6 -38.5 6.5 -25.0 -8.7 83 103 A Q H 34 S+ 0 0 95 1,-0.3 3,-0.5 2,-0.2 -1,-0.2 0.844 110.0 30.9 -59.8 -45.5 6.3 -21.5 -10.3 84 104 A E H 3< S+ 0 0 114 -4,-1.2 -1,-0.3 1,-0.2 -2,-0.2 0.528 113.4 66.3 -90.1 -8.4 9.3 -19.9 -8.6 85 105 A G S << S+ 0 0 66 -3,-0.5 2,-0.3 -4,-0.5 -1,-0.2 0.041 91.1 78.0-101.7 24.9 11.2 -23.2 -8.3 86 106 A V S S- 0 0 69 -3,-0.5 2,-0.6 2,-0.0 -4,-0.0 -0.991 70.5-136.9-135.2 138.8 11.6 -23.6 -12.1 87 107 A T - 0 0 136 -2,-0.3 -3,-0.0 0, 0.0 -2,-0.0 -0.879 25.9-157.1 -89.7 119.7 14.0 -22.1 -14.7 88 108 A I - 0 0 118 -2,-0.6 2,-0.1 2,-0.0 -2,-0.0 -0.914 3.1-148.0-104.9 109.4 11.9 -21.3 -17.8 89 109 A P > - 0 0 95 0, 0.0 2,-1.7 0, 0.0 3,-0.6 -0.445 38.2 -95.4 -65.1 150.7 13.8 -21.0 -21.2 90 110 A D T 3 S+ 0 0 172 1,-0.2 -2,-0.0 -2,-0.1 0, 0.0 -0.536 92.5 108.2 -75.2 84.1 12.3 -18.4 -23.6 91 111 A L T 3 0 0 165 -2,-1.7 -1,-0.2 0, 0.0 -3,-0.0 0.421 360.0 360.0-132.1 -20.1 10.1 -20.9 -25.7 92 112 A G < 0 0 148 -3,-0.6 -2,-0.1 0, 0.0 -4,-0.0 0.897 360.0 360.0 -79.4 360.0 6.7 -19.8 -24.4