==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-MAY-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN/RNA 28-SEP-10 2L41 . COMPND 2 MOLECULE: RRM DOMAIN FROM NUCLEAR POLYADENYLATED RNA-BINDIN . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR R.STEFL,R.PERGOLI,F.HOBOR,K.KUBICEK,M.ZIMMERMANN,J.PASULKA,C . 77 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5662.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 41 53.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 14 18.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 10.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 14 18.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A P 0 0 86 0, 0.0 2,-0.3 0, 0.0 74,-0.1 0.000 360.0 360.0 360.0 174.2 19.4 41.5 33.1 2 2 A K + 0 0 47 43,-0.2 2,-0.3 71,-0.2 43,-0.2 -0.946 360.0 158.6-129.1 151.2 21.5 41.1 29.9 3 3 A S E -A 44 0A 2 41,-0.8 41,-1.5 -2,-0.3 2,-0.3 -0.953 21.5-146.8-158.3 150.7 25.1 39.8 29.2 4 4 A R E -AB 43 72A 124 68,-2.5 68,-3.1 -2,-0.3 2,-0.4 -0.959 7.7-150.5-126.0 152.3 27.0 38.4 26.2 5 5 A L E -AB 42 71A 0 37,-2.5 37,-2.3 -2,-0.3 2,-0.4 -0.982 7.6-156.9-126.7 125.4 29.8 35.8 26.1 6 6 A F E -AB 41 70A 84 64,-3.1 64,-2.3 -2,-0.4 2,-0.4 -0.828 5.9-147.6-104.1 136.5 32.6 35.6 23.5 7 7 A I E - B 0 69A 8 33,-1.2 62,-0.2 -2,-0.4 13,-0.0 -0.872 17.1-127.2-101.3 137.9 34.7 32.5 22.6 8 8 A G - 0 0 9 60,-2.3 32,-0.1 -2,-0.4 -1,-0.1 0.029 42.2 -83.0 -63.9-175.1 38.3 32.7 21.5 9 9 A N S > S+ 0 0 126 1,-0.2 3,-0.9 2,-0.1 -1,-0.1 0.273 99.5 104.1 -83.9 13.2 39.6 31.1 18.3 10 10 A L T 3 + 0 0 78 1,-0.2 -1,-0.2 58,-0.2 29,-0.1 0.876 69.6 61.1 -58.2 -44.3 40.0 27.6 19.9 11 11 A P T 3 + 0 0 16 0, 0.0 2,-2.3 0, 0.0 3,-0.2 0.192 63.3 122.4 -81.9 21.9 36.8 26.0 18.3 12 12 A L < + 0 0 118 -3,-0.9 27,-0.1 1,-0.2 26,-0.1 -0.428 55.6 82.1 -76.6 59.3 38.3 26.5 14.7 13 13 A K S S- 0 0 152 -2,-2.3 -1,-0.2 25,-0.2 25,-0.1 -0.132 120.2 -66.7-153.3 31.6 37.9 22.7 14.2 14 14 A N - 0 0 146 23,-0.3 2,-0.3 -3,-0.2 24,-0.1 0.479 64.3-157.7 58.4 146.8 34.2 22.7 13.4 15 15 A V - 0 0 22 22,-0.2 2,-0.3 -3,-0.1 -1,-0.1 -0.969 12.1-165.8-151.2 153.0 31.7 23.8 16.0 16 16 A S >> - 0 0 67 -2,-0.3 3,-1.9 1,-0.0 4,-1.1 -0.892 44.7 -98.2-135.4 166.1 27.9 23.4 17.0 17 17 A K H 3> S+ 0 0 125 1,-0.3 4,-2.3 -2,-0.3 5,-0.1 0.852 123.4 65.0 -52.3 -32.9 25.4 25.1 19.4 18 18 A E H 3> S+ 0 0 126 2,-0.2 4,-1.9 1,-0.2 -1,-0.3 0.653 91.8 59.8 -67.5 -21.7 26.3 22.1 21.6 19 19 A D H <> S+ 0 0 62 -3,-1.9 4,-1.7 2,-0.2 -1,-0.2 0.937 112.0 38.9 -69.8 -47.5 29.9 23.2 22.0 20 20 A L H X S+ 0 0 1 -4,-1.1 4,-2.4 2,-0.2 -2,-0.2 0.866 114.2 56.5 -73.2 -29.2 28.8 26.5 23.6 21 21 A F H < S+ 0 0 121 -4,-2.3 -2,-0.2 2,-0.2 -1,-0.2 0.921 106.2 49.0 -61.8 -46.6 26.0 24.5 25.5 22 22 A R H < S+ 0 0 142 -4,-1.9 -2,-0.2 1,-0.1 3,-0.2 0.900 115.1 47.4 -61.9 -39.1 28.7 22.2 27.0 23 23 A I H < S+ 0 0 19 -4,-1.7 2,-0.5 1,-0.2 -2,-0.2 0.997 128.9 8.6 -60.7 -77.0 30.6 25.3 28.0 24 24 A F S < S+ 0 0 1 -4,-2.4 -1,-0.2 1,-0.1 -2,-0.1 -0.937 82.9 99.7-119.5 123.9 27.7 27.4 29.6 25 25 A S S S+ 0 0 32 -2,-0.5 2,-1.4 -3,-0.2 -1,-0.1 0.230 72.0 65.7-157.9 -41.5 24.2 26.2 30.3 26 26 A P S S+ 0 0 115 0, 0.0 2,-0.3 0, 0.0 -2,-0.0 -0.130 91.9 91.8 -81.0 43.4 23.8 25.4 34.1 27 27 A Y S S- 0 0 42 -2,-1.4 3,-0.3 26,-0.0 23,-0.1 -0.980 80.6 -23.8-136.1 146.1 24.4 29.1 35.0 28 28 A G S S- 0 0 45 -2,-0.3 18,-0.2 1,-0.2 -3,-0.0 0.102 94.0 -55.1 61.7-161.1 22.2 32.2 35.5 29 29 A H S S- 0 0 140 16,-1.3 -1,-0.2 1,-0.1 17,-0.2 0.471 78.5-149.3 -96.7 -2.1 18.7 32.9 34.2 30 30 A I - 0 0 65 15,-1.2 14,-0.1 -3,-0.3 -1,-0.1 0.286 26.4-175.6 62.2 167.7 19.8 32.3 30.5 31 31 A M - 0 0 81 13,-0.2 2,-0.3 12,-0.1 13,-0.2 -0.021 49.3 -27.5-152.1 -71.6 18.5 33.8 27.3 32 32 A Q E -C 43 0A 116 11,-2.8 11,-2.6 2,-0.0 2,-0.4 -0.990 40.3-124.2-156.5 155.8 19.9 32.5 23.9 33 33 A I E -C 42 0A 40 -2,-0.3 9,-0.2 9,-0.2 2,-0.2 -0.882 14.8-174.7-101.8 135.3 22.8 30.9 21.9 34 34 A N E -C 41 0A 90 7,-2.5 7,-2.1 -2,-0.4 2,-0.2 -0.632 17.4-176.5-127.0 68.8 24.2 32.7 18.8 35 35 A I - 0 0 39 5,-0.3 2,-0.3 -2,-0.2 5,-0.1 -0.483 6.6-164.5 -70.1 137.7 26.7 30.1 17.5 36 36 A K - 0 0 114 -2,-0.2 -2,-0.0 -20,-0.1 -20,-0.0 -0.952 29.5-117.2-124.1 145.8 28.9 31.0 14.4 37 37 A N S S+ 0 0 147 -2,-0.3 -23,-0.3 1,-0.2 -22,-0.2 0.530 113.0 37.8 -70.4 -8.9 30.9 28.4 12.4 38 38 A A S S- 0 0 30 1,-0.3 2,-0.3 -26,-0.1 -25,-0.2 0.821 140.1 -18.8 -94.2 -59.5 34.3 29.9 13.2 39 39 A F S S- 0 0 81 -27,-0.1 -1,-0.3 -29,-0.1 -2,-0.1 -0.972 74.6-131.8-150.5 132.0 33.7 30.8 16.9 40 40 A G - 0 0 0 -2,-0.3 -33,-1.2 -5,-0.1 2,-0.3 -0.228 6.5-143.6 -81.8 171.0 30.3 31.3 18.6 41 41 A F E -AC 6 34A 45 -7,-2.1 -7,-2.5 -35,-0.2 2,-0.3 -0.941 6.8-156.4-123.8 154.2 28.6 33.9 20.9 42 42 A I E -AC 5 33A 3 -37,-2.3 -37,-2.5 -2,-0.3 2,-0.3 -0.922 1.8-162.9-118.6 151.9 26.2 33.4 23.8 43 43 A Q E +AC 4 32A 77 -11,-2.6 -11,-2.8 -2,-0.3 2,-0.3 -0.910 27.2 163.3-136.4 108.3 23.7 36.1 25.2 44 44 A F E -A 3 0A 10 -41,-1.5 -41,-0.8 -2,-0.3 2,-0.3 -0.815 39.0-109.9-127.3 158.8 22.4 35.2 28.7 45 45 A D S S+ 0 0 29 -2,-0.3 -16,-1.3 -43,-0.2 -15,-1.2 -0.715 92.1 40.4 -90.1 147.5 20.6 36.7 31.8 46 46 A N > - 0 0 60 -2,-0.3 4,-1.6 -18,-0.2 3,-0.4 0.958 61.6-163.0 66.6 86.8 22.7 37.2 35.0 47 47 A P H > S+ 0 0 27 0, 0.0 4,-2.5 0, 0.0 5,-0.2 0.814 88.4 61.5 -59.5 -30.8 26.2 38.6 33.9 48 48 A Q H > S+ 0 0 156 2,-0.2 4,-2.2 1,-0.2 5,-0.1 0.900 104.9 47.4 -67.6 -36.1 27.7 37.6 37.4 49 49 A S H > S+ 0 0 16 -3,-0.4 4,-2.2 2,-0.2 -1,-0.2 0.888 110.3 52.3 -67.9 -37.6 26.8 34.0 36.7 50 50 A V H X S+ 0 0 1 -4,-1.6 4,-1.5 2,-0.2 -2,-0.2 0.912 112.8 45.4 -63.8 -40.4 28.4 34.3 33.2 51 51 A R H X S+ 0 0 116 -4,-2.5 4,-1.6 2,-0.2 -2,-0.2 0.865 111.8 50.8 -71.2 -36.1 31.6 35.6 34.9 52 52 A D H X S+ 0 0 85 -4,-2.2 4,-0.9 1,-0.2 -2,-0.2 0.833 108.7 53.6 -67.2 -31.6 31.5 32.9 37.6 53 53 A A H X>S+ 0 0 0 -4,-2.2 4,-3.0 2,-0.2 5,-0.5 0.855 102.9 57.0 -71.5 -32.9 31.2 30.4 34.7 54 54 A I H X5S+ 0 0 20 -4,-1.5 4,-1.5 1,-0.2 -2,-0.2 0.956 110.2 43.3 -60.5 -49.5 34.4 31.9 33.0 55 55 A E H <5S+ 0 0 108 -4,-1.6 -1,-0.2 1,-0.2 -2,-0.2 0.679 118.1 48.4 -73.1 -16.8 36.4 31.2 36.2 56 56 A C H <5S+ 0 0 63 -4,-0.9 3,-0.4 -5,-0.1 -2,-0.2 0.925 127.3 19.7 -76.8 -58.9 34.7 27.7 36.5 57 57 A E H <5S+ 0 0 54 -4,-3.0 -3,-0.2 1,-0.2 -2,-0.2 0.931 124.6 50.6 -89.9 -45.1 35.2 26.5 32.9 58 58 A S S <