==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=17-JUN-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN/DNA 01-OCT-10 2L46 . COMPND 2 MOLECULE: C-TERMINAL ZINC KNUCLE OF THE HIV-NCP7; . SOURCE 2 SYNTHETIC: YES; . AUTHOR S.QUINTAL,A.VIEGAS,E.CABRITA,N.FARRELL,S.ERHARDT . 19 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1947.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 5 26.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 5.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A K 0 0 229 0, 0.0 2,-0.3 0, 0.0 8,-0.1 0.000 360.0 360.0 360.0 94.2 5.0 -9.1 -13.5 2 2 A G - 0 0 18 6,-0.1 2,-0.3 7,-0.1 7,-0.2 -0.877 360.0 -10.6 125.9-157.0 2.5 -7.8 -10.9 3 3 A C - 0 0 8 -2,-0.3 9,-0.2 1,-0.1 10,-0.1 -0.661 45.7-164.3 -77.5 133.2 2.7 -6.0 -7.5 4 4 A W S S+ 0 0 173 8,-0.6 -1,-0.1 -2,-0.3 9,-0.1 0.750 81.1 59.7 -87.3 -26.3 6.3 -5.9 -6.0 5 5 A K S S+ 0 0 59 7,-0.7 -1,-0.1 3,-0.1 8,-0.1 0.957 128.7 0.8 -71.1 -59.2 5.2 -4.9 -2.4 6 6 A C S S- 0 0 45 6,-0.1 -2,-0.1 2,-0.1 -1,-0.1 0.798 99.2-109.7-100.6 -41.3 2.9 -7.8 -1.4 7 7 A G + 0 0 56 1,-0.2 2,-0.7 5,-0.1 -3,-0.1 0.480 69.7 138.1 110.7 17.7 3.1 -10.0 -4.5 8 8 A K > - 0 0 119 -6,-0.1 3,-0.7 4,-0.1 -1,-0.2 -0.825 44.4-141.9-100.2 107.2 -0.5 -9.4 -5.8 9 9 A E T 3 S+ 0 0 154 -2,-0.7 3,-0.1 -7,-0.2 -7,-0.1 -0.183 78.3 62.9 -62.1 158.4 -1.0 -9.0 -9.5 10 10 A G T 3 S+ 0 0 82 1,-0.4 2,-0.2 0, 0.0 -1,-0.2 0.174 111.2 27.7 104.4 -11.2 -3.5 -6.4 -10.8 11 11 A H < - 0 0 43 -3,-0.7 -1,-0.4 1,-0.1 -9,-0.1 -0.770 57.1-155.8-152.0-167.4 -1.7 -3.4 -9.2 12 12 A Q S S- 0 0 79 -2,-0.2 -7,-0.7 -9,-0.2 -8,-0.6 0.448 72.0 -34.8-149.6 -45.7 1.8 -2.3 -8.0 13 13 A M S > S+ 0 0 83 -10,-0.1 3,-1.3 -9,-0.1 5,-0.2 0.280 124.2 55.7-150.6 -62.7 1.9 0.5 -5.3 14 14 A K T 3 S+ 0 0 205 1,-0.3 5,-0.1 5,-0.2 -3,-0.0 0.773 120.6 35.1 -35.1 -47.9 -1.0 3.1 -5.4 15 15 A D T 3 S+ 0 0 122 4,-0.1 -1,-0.3 3,-0.1 2,-0.1 0.281 96.4 97.5-112.1 -11.1 -3.5 0.4 -5.3 16 16 A C S < S- 0 0 18 -3,-1.3 3,-0.1 1,-0.1 -3,-0.1 -0.256 81.1-121.6 -65.6 168.8 -1.8 -2.1 -3.0 17 17 A T S S+ 0 0 125 1,-0.2 2,-0.3 2,-0.1 -1,-0.1 0.449 100.5 51.9 -86.8 -2.0 -2.7 -2.1 0.7 18 18 A E 0 0 100 -5,-0.2 -1,-0.2 1,-0.1 -13,-0.1 -0.911 360.0 360.0-145.8 113.2 1.0 -1.4 1.4 19 19 A R 0 0 229 -2,-0.3 -5,-0.2 -3,-0.1 -4,-0.1 0.924 360.0 360.0 49.7 360.0 3.4 1.3 -0.0