==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=14-AUG-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN/DNA 08-OCT-10 2L4L . COMPND 2 MOLECULE: HIV-1 NUCLEOCAPSID PROTEIN NCP7; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR A.BAZZI,L.ZARGARIAN,F.CHAMINADE,C.BOUDIER,H.DE ROCQUIGNY,B.R . 45 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4262.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 9 20.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 4.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 4.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 3 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 11 A K 0 0 211 0, 0.0 3,-0.1 0, 0.0 10,-0.0 0.000 360.0 360.0 360.0 24.1 18.1 -27.0 9.0 2 12 A N + 0 0 152 1,-0.2 2,-0.4 0, 0.0 9,-0.1 0.893 360.0 135.1 59.6 40.8 21.4 -28.1 7.3 3 13 A V - 0 0 53 10,-0.1 10,-0.9 7,-0.0 -1,-0.2 -0.981 54.8-130.1-124.4 129.6 21.8 -30.9 9.8 4 14 A K - 0 0 143 -2,-0.4 7,-0.2 7,-0.2 6,-0.2 -0.487 33.9-111.0 -74.2 144.4 22.7 -34.5 8.9 5 15 A C > - 0 0 8 5,-1.1 4,-0.5 -2,-0.1 9,-0.1 -0.464 15.8-127.0 -78.7 149.7 20.3 -37.1 10.5 6 16 A F T 4 S+ 0 0 114 1,-0.2 -1,-0.1 -2,-0.1 -2,-0.0 0.886 104.0 11.3 -60.1 -45.9 21.6 -39.4 13.3 7 17 A N T 4 S+ 0 0 63 3,-0.1 -1,-0.2 13,-0.0 -2,-0.0 0.499 134.7 43.0-114.3 -8.5 20.5 -42.6 11.7 8 18 A C T 4 S- 0 0 35 2,-0.2 -2,-0.1 12,-0.1 3,-0.1 0.729 81.7-148.3-108.5 -31.0 19.6 -41.6 8.1 9 19 A G < + 0 0 39 -4,-0.5 -3,-0.0 1,-0.3 -1,-0.0 -0.060 56.8 120.3 88.5 -34.4 22.4 -39.2 7.2 10 20 A K - 0 0 152 -6,-0.2 -5,-1.1 1,-0.1 -1,-0.3 -0.322 56.4-136.0 -64.5 146.1 20.3 -37.0 4.9 11 21 A E S S+ 0 0 81 -7,-0.2 -7,-0.2 1,-0.2 3,-0.1 -0.259 73.4 71.2 -93.9-174.8 20.0 -33.4 6.0 12 22 A G S S+ 0 0 54 1,-0.2 2,-0.3 -9,-0.2 -1,-0.2 0.617 108.7 20.4 82.3 13.6 17.1 -30.9 6.2 13 23 A H S S- 0 0 26 -10,-0.9 2,-0.3 -3,-0.2 -1,-0.2 -0.948 84.8 -90.5-178.4-164.7 15.6 -32.7 9.2 14 24 A T >> - 0 0 52 -2,-0.3 3,-3.1 -9,-0.1 4,-0.6 -0.999 48.8 -83.5-141.9 140.7 16.5 -35.1 12.1 15 25 A A T 34 S+ 0 0 3 -2,-0.3 -10,-0.1 1,-0.3 -5,-0.1 0.443 124.8 48.6 2.5 -67.1 16.4 -39.0 12.6 16 26 A R T 34 S+ 0 0 158 1,-0.2 -1,-0.3 6,-0.0 6,-0.1 0.894 112.5 47.8 -57.9 -42.9 12.7 -39.2 13.5 17 27 A N T <4 S+ 0 0 101 -3,-3.1 -1,-0.2 2,-0.0 -2,-0.2 0.864 87.5 103.4 -66.8 -38.8 11.6 -37.0 10.5 18 28 A C < - 0 0 17 -4,-0.6 -6,-0.0 1,-0.1 -5,-0.0 -0.170 70.0-140.7 -48.9 135.4 13.7 -38.9 8.0 19 29 A R S S+ 0 0 242 2,-0.0 -1,-0.1 -11,-0.0 3,-0.1 0.905 77.1 94.2 -65.0 -41.7 11.6 -41.3 5.9 20 30 A A S S- 0 0 45 1,-0.1 -12,-0.1 -12,-0.0 -13,-0.0 0.131 96.5 -71.1 -43.8 167.1 14.3 -43.9 6.0 21 31 A P - 0 0 110 0, 0.0 2,-0.1 0, 0.0 -1,-0.1 -0.342 50.9-121.7 -67.8 145.5 14.1 -46.6 8.7 22 32 A R - 0 0 162 -3,-0.1 2,-0.3 1,-0.1 -6,-0.0 -0.477 27.7 -99.6 -87.0 159.7 14.7 -45.6 12.3 23 33 A K - 0 0 86 -2,-0.1 4,-0.1 1,-0.1 -1,-0.1 -0.612 22.0-143.6 -79.4 133.3 17.4 -47.1 14.6 24 34 A K S S+ 0 0 193 -2,-0.3 9,-0.4 2,-0.1 -1,-0.1 0.905 82.9 41.7 -63.9 -41.6 16.0 -49.7 17.0 25 35 A G S S- 0 0 9 1,-0.2 7,-0.3 7,-0.2 6,-0.3 -0.359 111.7 -58.1 -99.1-179.0 18.4 -48.6 19.8 26 36 A C > - 0 0 3 5,-4.8 4,-1.6 1,-0.1 -1,-0.2 -0.346 42.7-145.8 -60.6 133.3 19.6 -45.3 21.1 27 37 A W T 4 S+ 0 0 61 2,-0.2 -1,-0.1 1,-0.2 9,-0.1 0.983 96.7 32.2 -65.3 -60.2 21.3 -43.2 18.4 28 38 A K T 4 S+ 0 0 105 1,-0.1 -1,-0.2 2,-0.1 8,-0.1 0.869 138.0 25.5 -65.1 -40.2 23.9 -41.5 20.6 29 39 A C T 4 S- 0 0 34 2,-0.1 2,-0.5 7,-0.1 -2,-0.2 0.791 89.1-143.9 -96.8 -34.3 24.2 -44.4 23.0 30 40 A G < + 0 0 26 -4,-1.6 -1,-0.1 1,-0.3 -2,-0.1 -0.331 58.9 115.5 101.1 -53.5 23.2 -47.5 20.9 31 41 A K - 0 0 131 -2,-0.5 -5,-4.8 -6,-0.3 2,-0.3 0.266 59.7-121.9 -41.1 176.5 21.4 -49.5 23.6 32 42 A E S S+ 0 0 141 -7,-0.3 -7,-0.2 1,-0.1 -1,-0.1 -0.862 74.4 56.0-127.9 164.9 17.6 -50.2 23.4 33 43 A G S S+ 0 0 81 -9,-0.4 2,-0.3 1,-0.3 -1,-0.1 0.727 100.3 44.5 89.5 26.2 14.4 -49.6 25.4 34 44 A H S S- 0 0 42 -3,-0.2 -1,-0.3 1,-0.1 0, 0.0 -0.979 87.3 -77.9-174.1-178.2 14.7 -45.8 25.7 35 45 A Q - 0 0 151 -2,-0.3 4,-0.2 -3,-0.1 -9,-0.1 0.191 55.9 -93.6 -77.7-156.0 15.4 -42.4 24.0 36 46 A M S > S+ 0 0 38 -10,-0.1 3,-0.5 2,-0.1 5,-0.2 0.886 119.0 41.0 -89.6 -48.8 18.9 -41.2 23.3 37 47 A K T 3 S+ 0 0 160 1,-0.2 4,-0.5 4,-0.1 5,-0.3 0.865 101.3 69.1 -67.6 -42.1 19.6 -39.1 26.4 38 48 A D T 3 S+ 0 0 129 2,-0.1 -1,-0.2 3,-0.1 2,-0.2 0.767 95.6 66.3 -50.6 -30.7 18.0 -41.5 29.0 39 49 A C S < S- 0 0 18 -3,-0.5 2,-4.3 -4,-0.2 3,-0.5 -0.510 111.8 -81.0 -94.1 163.5 20.8 -44.0 28.4 40 50 A T S S+ 0 0 89 1,-0.2 3,-0.3 -2,-0.2 -2,-0.1 -0.216 78.3 136.4 -60.6 63.3 24.5 -43.7 29.2 41 51 A E S S+ 0 0 53 -2,-4.3 -1,-0.2 -4,-0.5 2,-0.2 0.828 79.1 13.0 -80.7 -33.3 25.1 -41.6 26.1 42 52 A R S S- 0 0 212 -3,-0.5 -1,-0.3 -5,-0.3 -13,-0.0 -0.684 113.1 -79.9-148.6 90.3 27.3 -39.1 27.9 43 53 A Q - 0 0 175 -3,-0.3 -3,-0.1 -2,-0.2 -2,-0.0 0.675 44.9-164.1 13.2 89.5 28.6 -39.9 31.3 44 54 A A 0 0 90 1,-0.2 -1,-0.1 -6,-0.0 -4,-0.0 0.887 360.0 360.0 -62.5 -38.9 25.4 -39.0 33.3 45 55 A N 0 0 214 0, 0.0 -1,-0.2 0, 0.0 -2,-0.0 -0.340 360.0 360.0 53.8 360.0 27.4 -39.0 36.5