==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=18-DEC-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 11-JAN-11 2L8E . COMPND 2 MOLECULE: POLYHOMEOTIC-LIKE PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR U.ILANGOVAN,C.KIM . 49 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4215.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 28 57.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 8.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 10.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 16.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 14.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 121 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 179.9 -18.8 5.6 6.0 2 2 A T + 0 0 135 2,-0.1 2,-0.7 3,-0.0 3,-0.3 -0.084 360.0 113.5 -93.9 34.7 -18.2 5.6 2.3 3 3 A R S S+ 0 0 154 1,-0.2 11,-0.1 2,-0.1 10,-0.1 -0.909 84.7 7.2-109.8 107.0 -15.3 3.2 2.5 4 783 A G S S+ 0 0 23 -2,-0.7 3,-0.3 9,-0.2 -1,-0.2 0.767 87.8 124.7 96.7 31.1 -16.0 -0.2 0.9 5 784 A V S S+ 0 0 104 -3,-0.3 2,-0.6 1,-0.2 -2,-0.1 0.960 83.7 24.1 -82.9 -67.8 -19.4 0.5 -0.6 6 785 A D S S+ 0 0 118 -4,-0.2 -1,-0.2 3,-0.1 3,-0.1 -0.209 104.6 120.7 -89.3 44.1 -18.9 -0.4 -4.3 7 786 A S > - 0 0 18 -2,-0.6 3,-0.6 -3,-0.3 6,-0.1 -0.934 44.0-179.6-122.6 120.2 -16.0 -2.6 -3.4 8 787 A P T 3 S+ 0 0 127 0, 0.0 2,-1.0 0, 0.0 3,-0.4 0.869 99.1 52.1 -71.8 -41.0 -15.6 -6.4 -3.9 9 788 A S T > >S+ 0 0 51 1,-0.2 5,-2.0 -3,-0.1 3,-0.7 -0.377 72.1 146.0 -87.5 52.8 -12.3 -6.0 -2.2 10 789 A A G X 5 + 0 0 46 -2,-1.0 3,-2.0 -3,-0.6 -1,-0.2 0.851 66.0 61.6 -60.1 -34.5 -14.1 -4.3 0.7 11 790 A E G 3 5S+ 0 0 196 -3,-0.4 -1,-0.3 1,-0.3 -2,-0.1 0.855 104.2 47.5 -59.7 -36.5 -11.6 -5.9 3.1 12 791 A L G X 5S- 0 0 98 -3,-0.7 3,-1.1 -8,-0.0 -1,-0.3 0.152 122.3-111.4 -92.8 18.2 -8.8 -4.1 1.3 13 792 A D G X 5 - 0 0 31 -3,-2.0 3,-1.3 1,-0.3 2,-0.4 0.862 60.8 -69.5 56.1 41.6 -10.9 -0.9 1.6 14 793 A K G 3 < - 0 0 82 -5,-2.0 -1,-0.3 1,-0.3 -4,-0.1 0.114 65.5-107.5 73.9 -23.7 -11.5 -0.8 -2.2 15 794 A K G < S+ 0 0 82 -3,-1.1 -1,-0.3 -2,-0.4 3,-0.2 0.931 78.7 140.6 56.3 47.0 -7.9 0.1 -2.6 16 795 A A < + 0 0 71 -3,-1.3 2,-2.0 1,-0.2 -2,-0.1 0.954 56.8 55.6 -74.3 -63.0 -9.1 3.6 -3.4 17 796 A N S S+ 0 0 79 -4,-0.3 13,-2.0 2,-0.0 2,-0.3 -0.500 82.0 165.2 -77.7 77.2 -6.5 5.7 -1.6 18 797 A L E +A 29 0A 70 -2,-2.0 2,-0.3 -3,-0.2 9,-0.1 -0.659 18.5 162.2 -98.2 152.6 -3.4 4.2 -3.2 19 798 A L E -A 28 0A 53 9,-1.4 9,-2.0 -2,-0.3 2,-0.4 -0.829 31.1-121.0-145.2 179.9 0.2 5.3 -3.4 20 799 A K E -A 27 0A 58 -2,-0.3 7,-0.2 7,-0.2 2,-0.2 -0.985 20.8 -94.0-145.0 148.0 3.1 3.1 -4.3 21 800 A C > - 0 0 0 5,-1.5 4,-1.5 -2,-0.4 18,-0.3 -0.313 29.8-140.6 -49.6 111.3 6.4 1.8 -3.0 22 801 A E T 4 S+ 0 0 128 16,-2.7 -1,-0.2 -2,-0.2 17,-0.1 0.297 98.3 52.2 -62.9 12.9 9.2 4.1 -4.3 23 802 A Y T 4 S+ 0 0 118 15,-0.1 -1,-0.1 3,-0.1 16,-0.1 0.609 127.9 6.6-105.8 -89.6 11.1 0.9 -4.8 24 803 A C T 4 S- 0 0 65 2,-0.1 -2,-0.1 1,-0.1 15,-0.0 0.811 93.3-131.5 -65.5 -32.7 9.2 -1.7 -6.9 25 804 A G < + 0 0 27 -4,-1.5 2,-0.3 1,-0.3 -3,-0.1 0.716 46.7 157.8 90.8 20.1 6.4 0.8 -7.6 26 805 A K - 0 0 152 -5,-0.1 -5,-1.5 1,-0.0 2,-0.3 -0.639 38.6-126.9 -82.2 136.7 3.5 -1.4 -6.7 27 806 A Y E +A 20 0A 166 -2,-0.3 -7,-0.2 -7,-0.2 -9,-0.1 -0.631 40.6 152.8 -88.2 138.4 0.3 0.3 -5.8 28 807 A A E -A 19 0A 12 -9,-2.0 -9,-1.4 -2,-0.3 2,-0.2 -0.967 52.9 -71.8-157.1 160.7 -1.4 -0.6 -2.5 29 808 A P E > -A 18 0A 22 0, 0.0 3,-3.6 0, 0.0 4,-0.3 -0.492 47.1-122.5 -63.2 125.8 -3.7 0.9 0.1 30 809 A A G > S+ 0 0 22 -13,-2.0 3,-1.6 1,-0.3 7,-0.2 0.696 108.6 72.8 -42.1 -27.0 -1.7 3.4 2.1 31 810 A E G 3 S+ 0 0 152 1,-0.3 -1,-0.3 -14,-0.2 -13,-0.1 0.762 92.1 55.1 -61.3 -26.4 -2.5 1.4 5.2 32 811 A Q G < S+ 0 0 71 -3,-3.6 2,-1.8 1,-0.2 -1,-0.3 0.501 81.8 94.9 -87.3 -2.1 -0.1 -1.3 4.0 33 812 A F <> + 0 0 3 -3,-1.6 4,-2.3 -4,-0.3 3,-0.3 -0.400 40.5 152.5 -91.9 62.8 2.7 1.3 3.8 34 813 A R T 4 + 0 0 198 -2,-1.8 -1,-0.2 1,-0.3 6,-0.1 0.517 54.2 86.9 -72.0 -5.2 4.0 0.6 7.2 35 814 A G T 4 S- 0 0 16 4,-0.9 -1,-0.3 -3,-0.2 4,-0.3 -0.073 125.5 -88.5 -82.6 33.8 7.3 1.8 6.0 36 815 A S T 4 S- 0 0 88 -3,-0.3 -2,-0.2 1,-0.2 -1,-0.1 0.906 79.5 -57.7 56.6 47.1 6.1 5.2 7.0 37 816 A K S < S+ 0 0 128 -4,-2.3 -1,-0.2 2,-0.3 3,-0.1 0.924 125.1 88.1 55.4 58.2 4.5 5.9 3.6 38 817 A R S S+ 0 0 155 1,-0.7 -16,-2.7 2,-0.1 2,-0.3 0.366 93.7 12.6-144.3 -42.6 7.5 5.5 1.4 39 818 A F S S- 0 0 14 -18,-0.3 -4,-0.9 -4,-0.3 -1,-0.7 -0.885 79.6-102.1-136.0 162.9 7.5 1.8 0.7 40 819 A C - 0 0 10 -2,-0.3 5,-0.4 -7,-0.1 -1,-0.2 0.204 67.5 -45.5 -68.6-157.8 5.2 -1.1 1.0 41 820 A S S > S- 0 0 50 3,-0.1 4,-2.0 -7,-0.1 5,-0.3 0.734 85.9 -46.6 -67.9-131.0 5.6 -3.7 3.9 42 821 A M H > S+ 0 0 126 2,-0.2 4,-2.7 1,-0.2 5,-0.4 0.970 124.0 50.2 -78.5 -57.6 8.7 -5.5 5.3 43 822 A T H > S+ 0 0 99 1,-0.2 4,-0.9 2,-0.2 -1,-0.2 0.884 120.9 36.4 -44.3 -52.0 10.7 -6.9 2.4 44 823 A C H > S+ 0 0 23 2,-0.2 4,-1.1 1,-0.1 3,-0.3 0.955 117.8 46.2 -73.1 -54.0 10.7 -3.5 0.5 45 824 A A H >X S+ 0 0 18 -4,-2.0 4,-1.6 -5,-0.4 3,-0.7 0.918 116.1 46.5 -58.7 -45.1 11.0 -1.0 3.4 46 825 A K H 3< S+ 0 0 145 -4,-2.7 -1,-0.2 -5,-0.3 -2,-0.2 0.795 105.0 62.2 -66.1 -27.7 13.8 -2.9 5.1 47 826 A R H 3< S+ 0 0 161 -4,-0.9 -1,-0.2 -5,-0.4 -2,-0.2 0.765 107.9 42.6 -73.8 -23.8 15.6 -3.4 1.7 48 827 A Y H << 0 0 144 -4,-1.1 -1,-0.2 -3,-0.7 -2,-0.2 0.812 360.0 360.0 -85.6 -34.0 15.9 0.4 1.4 49 828 A N < 0 0 185 -4,-1.6 -3,-0.2 -5,-0.2 -2,-0.1 0.999 360.0 360.0 63.0 360.0 16.9 0.8 5.1