==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-MAY-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTIMICROBIAL PROTEIN 25-NOV-11 2LM8 . COMPND 2 MOLECULE: CDT-LPS; . SOURCE 2 SYNTHETIC: YES . AUTHOR M.JOSHI,S.BHATTACHARJYA,R.SARAVANAN . 13 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2030.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 5 38.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 15.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 15.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A K 0 0 218 0, 0.0 2,-0.2 0, 0.0 12,-0.2 0.000 360.0 360.0 360.0 168.8 2.1 -0.0 -1.2 2 2 A W - 0 0 109 10,-1.5 3,-0.2 1,-0.3 9,-0.0 -0.559 360.0 -65.1-114.9-179.6 4.9 -2.3 -2.5 3 3 A F S S- 0 0 138 -2,-0.2 -1,-0.3 10,-0.2 9,-0.0 0.152 85.5 -45.8 -54.2-179.7 8.6 -2.0 -3.3 4 4 A R - 0 0 143 9,-0.1 -1,-0.2 1,-0.1 8,-0.1 -0.288 68.2-126.7 -55.1 127.9 9.8 0.2 -6.2 5 5 A V - 0 0 50 -3,-0.2 2,-0.3 6,-0.1 5,-0.1 -0.037 26.4-162.2 -68.4 177.2 7.7 -0.5 -9.3 6 6 A Y B > -A 9 0A 169 3,-0.6 3,-1.3 0, 0.0 2,-0.7 -0.964 32.7 -75.1-156.2 168.8 9.1 -1.5 -12.7 7 7 A R T 3 S+ 0 0 245 -2,-0.3 3,-0.1 1,-0.2 0, 0.0 -0.606 114.3 37.9 -74.9 110.2 8.2 -1.7 -16.4 8 8 A G T 3 S+ 0 0 84 -2,-0.7 2,-0.4 1,-0.1 -1,-0.2 0.104 104.6 66.2 138.5 -22.6 6.0 -4.7 -16.8 9 9 A I B < S-A 6 0A 94 -3,-1.3 2,-0.8 2,-0.0 -3,-0.6 -0.991 74.1-130.7-134.4 127.4 3.8 -4.6 -13.8 10 10 A Y + 0 0 232 -2,-0.4 2,-0.3 -5,-0.1 -3,-0.1 -0.648 56.6 119.9 -78.6 110.1 1.2 -2.0 -12.8 11 11 A R - 0 0 156 -2,-0.8 2,-0.4 -5,-0.1 -6,-0.1 -0.913 54.9-116.1-156.1 180.0 1.8 -1.0 -9.2 12 12 A R 0 0 201 -2,-0.3 -10,-1.5 -8,-0.1 -2,-0.0 -0.981 360.0 360.0-134.9 122.8 2.6 1.9 -6.9 13 13 A R 0 0 191 -2,-0.4 -10,-0.2 -12,-0.2 -9,-0.1 -0.312 360.0 360.0 -80.2 360.0 5.8 2.3 -4.8