==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTIMICROBIAL PEPTIDE 20-MAR-98 1PG1 . COMPND 2 MOLECULE: PROTEGRIN-1; . SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; . AUTHOR R.L.FAHRNER,T.DIECKMANN,S.S.L.HARWIG,R.I.LEHRER,D.EISENBERG, . 18 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1986.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 12 66.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 7 38.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 27.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A R 0 0 235 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 152.4 10.4 5.4 -7.2 2 2 A G - 0 0 53 2,-0.2 16,-0.1 1,-0.1 15,-0.0 -0.274 360.0-116.9 -93.2-175.7 9.3 6.3 -3.6 3 3 A G S S+ 0 0 40 -2,-0.1 15,-1.7 14,-0.1 -1,-0.1 0.829 86.4 88.4 -92.2 -37.0 9.1 4.1 -0.4 4 4 A R E +A 17 0A 145 13,-0.3 2,-0.3 14,-0.1 13,-0.3 -0.308 57.1 177.6 -62.3 144.7 5.3 4.4 0.2 5 5 A L E -A 16 0A 76 11,-3.5 11,-3.9 2,-0.0 2,-0.4 -1.000 20.5-163.1-150.9 149.7 3.2 1.7 -1.6 6 6 A a E -A 15 0A 70 -2,-0.3 2,-0.4 9,-0.3 9,-0.3 -0.983 13.9-179.5-136.3 122.0 -0.5 0.7 -1.8 7 7 A Y E -A 14 0A 57 7,-2.3 7,-3.8 -2,-0.4 2,-1.0 -0.971 28.2-131.5-126.9 140.3 -1.6 -2.7 -3.2 8 8 A b E -A 13 0A 90 -2,-0.4 2,-0.8 5,-0.3 5,-0.3 -0.738 27.4-164.9 -89.1 101.1 -5.1 -4.2 -3.6 9 9 A R E > -A 12 0A 148 3,-3.9 2,-4.3 -2,-1.0 3,-1.0 -0.785 59.9 -55.3 -94.6 108.0 -4.8 -7.7 -2.1 10 10 A R T 3 S- 0 0 230 -2,-0.8 -1,-0.1 1,-0.3 3,-0.1 -0.158 135.5 -3.1 60.2 -58.9 -7.7 -9.9 -3.1 11 11 A R T 3 S+ 0 0 210 -2,-4.3 2,-0.3 1,-0.2 -1,-0.3 0.232 125.5 60.0-146.4 14.7 -10.3 -7.4 -1.8 12 12 A F E < -A 9 0A 100 -3,-1.0 -3,-3.9 2,-0.0 2,-0.7 -0.950 62.7-136.8-154.3 135.6 -8.4 -4.5 -0.2 13 13 A b E -A 8 0A 78 -5,-0.3 2,-0.5 -2,-0.3 -5,-0.3 -0.753 29.9-161.2 -87.4 115.1 -5.8 -1.8 -1.2 14 14 A V E -A 7 0A 40 -7,-3.8 -7,-2.3 -2,-0.7 2,-0.6 -0.868 5.5-150.4-104.8 130.6 -3.3 -1.7 1.6 15 15 A a E +A 6 0A 84 -2,-0.5 -9,-0.3 -9,-0.3 2,-0.3 -0.860 27.5 157.7-102.3 123.8 -1.0 1.3 2.0 16 16 A V E -A 5 0A 52 -11,-3.9 -11,-3.5 -2,-0.6 2,-0.4 -0.842 34.1-134.2-136.0 172.1 2.4 0.7 3.6 17 17 A G E A 4 0A 47 -13,-0.3 -13,-0.3 -2,-0.3 -14,-0.1 -0.833 360.0 360.0-135.4 99.9 5.9 2.5 3.6 18 18 A R 0 0 231 -15,-1.7 -14,-0.1 -2,-0.4 -1,-0.0 -0.170 360.0 360.0 -96.6 360.0 9.0 0.4 3.0