==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 21-JUL-03 1Q1H . COMPND 2 MOLECULE: TRANSCRIPTION FACTOR E; . SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; . AUTHOR A.MEINHART,J.BLOBEL,P.CRAMER . 85 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5870.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 68.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 8 9.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 12.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 35 41.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 120 0, 0.0 2,-2.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-107.7 15.9 24.7 37.7 2 2 A V > + 0 0 121 1,-0.2 3,-0.8 2,-0.0 0, 0.0 -0.423 360.0 45.4 72.5 -72.8 15.8 27.2 34.9 3 3 A N T 3> S+ 0 0 117 -2,-2.4 4,-0.7 1,-0.2 -1,-0.2 0.019 99.1 77.9 -89.7 28.8 19.6 27.3 34.3 4 4 A A T 34 S+ 0 0 5 2,-0.2 -1,-0.2 3,-0.1 4,-0.2 0.553 77.3 64.6-110.8 -14.5 19.7 23.5 34.5 5 5 A E T <4 S+ 0 0 72 -3,-0.8 -2,-0.1 3,-0.1 -1,-0.1 0.215 119.4 31.6 -89.7 14.9 18.4 22.6 31.0 6 6 A D T > S+ 0 0 101 2,-0.1 4,-1.6 3,-0.1 5,-0.3 0.475 109.7 59.8-133.8 -43.7 21.7 24.4 30.1 7 7 A L H X S+ 0 0 91 -4,-0.7 4,-0.7 1,-0.2 -3,-0.1 0.611 113.5 49.0 -64.5 -7.0 24.0 23.5 32.9 8 8 A F H > S+ 0 0 1 2,-0.2 4,-1.5 -4,-0.2 -1,-0.2 0.838 109.4 45.4 -96.2 -48.3 23.0 20.1 31.6 9 9 A I H > S+ 0 0 11 1,-0.2 4,-1.1 2,-0.2 -2,-0.2 0.540 116.1 51.5 -73.9 -6.7 23.7 20.8 27.9 10 10 A N H X S+ 0 0 95 -4,-1.6 4,-2.2 2,-0.2 -1,-0.2 0.841 106.1 48.5 -95.6 -47.1 27.0 22.4 29.0 11 11 A L H < S+ 0 0 72 -4,-0.7 -2,-0.2 -5,-0.3 -3,-0.1 0.833 113.4 53.8 -61.7 -30.3 28.3 19.6 31.2 12 12 A A H >X S+ 0 0 0 -4,-1.5 3,-3.1 2,-0.2 4,-2.9 0.999 108.3 45.3 -64.6 -67.9 27.5 17.4 28.2 13 13 A K H 3< S+ 0 0 100 -4,-1.1 -2,-0.2 1,-0.3 -3,-0.1 0.912 108.9 54.8 -39.3 -66.1 29.4 19.3 25.6 14 14 A S T 3< S+ 0 0 108 -4,-2.2 -1,-0.3 1,-0.2 -2,-0.2 0.524 120.3 36.4 -52.6 -1.4 32.5 19.7 27.8 15 15 A L T <4 S+ 0 0 95 -3,-3.1 -2,-0.2 2,-0.2 -1,-0.2 0.702 124.6 14.8-119.1 -42.1 32.4 15.9 28.1 16 16 A L S < S- 0 0 30 -4,-2.9 -1,-0.1 1,-0.3 41,-0.0 -0.399 89.3 -73.8-120.3-160.6 31.2 14.5 24.7 17 17 A G - 0 0 37 -2,-0.1 -1,-0.3 1,-0.1 -2,-0.2 0.586 37.4-115.3 -69.2-133.8 30.8 15.7 21.2 18 18 A D S > S+ 0 0 104 2,-0.1 4,-1.5 3,-0.0 5,-0.1 0.208 111.2 74.9-141.0 -25.5 28.1 18.0 19.9 19 19 A D T 4 S+ 0 0 103 1,-0.2 4,-0.5 2,-0.2 34,-0.1 0.853 102.8 45.3 -58.4 -32.7 26.7 15.3 17.8 20 20 A V T >> S+ 0 0 3 2,-0.2 3,-1.9 1,-0.2 4,-1.6 0.935 100.8 62.1 -76.0 -52.2 25.5 14.1 21.2 21 21 A I H 3> S+ 0 0 13 1,-0.3 4,-1.3 2,-0.2 -2,-0.2 0.779 97.6 62.4 -47.1 -31.5 24.2 17.4 22.5 22 22 A D H 3X S+ 0 0 88 -4,-1.5 4,-1.3 2,-0.2 -1,-0.3 0.878 104.6 46.5 -63.9 -38.1 21.7 17.4 19.7 23 23 A V H <> S+ 0 0 1 -3,-1.9 4,-1.6 -4,-0.5 -2,-0.2 0.961 106.2 55.3 -68.2 -53.6 20.1 14.2 21.0 24 24 A L H X S+ 0 0 0 -4,-1.6 4,-2.7 1,-0.2 -1,-0.2 0.816 104.8 62.3 -48.5 -32.6 19.9 15.3 24.6 25 25 A R H X S+ 0 0 71 -4,-1.3 4,-2.2 -5,-0.3 -1,-0.2 0.985 97.5 47.3 -57.8 -72.8 18.0 18.2 23.2 26 26 A I H X S+ 0 0 24 -4,-1.3 4,-2.9 1,-0.2 5,-0.3 0.840 115.4 52.1 -39.0 -41.7 14.9 16.6 21.6 27 27 A L H X S+ 0 0 1 -4,-1.6 4,-2.1 1,-0.2 5,-0.3 0.990 106.7 48.4 -60.2 -62.2 14.7 14.6 24.9 28 28 A L H < S+ 0 0 19 -4,-2.7 -1,-0.2 1,-0.2 -2,-0.2 0.759 117.4 49.4 -50.1 -24.9 14.8 17.8 27.1 29 29 A D H < S+ 0 0 83 -4,-2.2 -2,-0.2 -5,-0.2 -1,-0.2 0.979 105.7 47.0 -79.2 -69.3 12.1 19.1 24.7 30 30 A K H < S- 0 0 92 -4,-2.9 -2,-0.2 1,-0.1 -3,-0.1 0.828 90.4-150.2 -45.1 -37.1 9.5 16.3 24.4 31 31 A G < + 0 0 57 -4,-2.1 2,-0.3 -5,-0.3 -1,-0.1 0.607 65.2 71.1 74.8 12.2 9.6 16.1 28.2 32 32 A T S S- 0 0 84 -5,-0.3 -1,-0.1 1,-0.1 46,-0.1 -0.976 97.3 -59.0-154.3 155.8 8.6 12.4 28.2 33 33 A E - 0 0 61 -2,-0.3 2,-0.3 -3,-0.1 46,-0.2 0.132 52.4-174.8 -37.7 146.4 10.3 9.1 27.2 34 34 A M B -A 78 0A 0 44,-2.0 44,-3.7 -3,-0.0 2,-0.4 -0.897 15.2-136.7-140.7 166.1 11.5 8.6 23.7 35 35 A T >> - 0 0 12 -2,-0.3 4,-1.0 42,-0.2 3,-0.6 -0.994 33.6-105.8-134.0 134.8 13.0 5.8 21.6 36 36 A D H 3> S+ 0 0 25 -2,-0.4 4,-1.4 1,-0.3 5,-0.2 0.722 123.3 56.0 -20.1 -51.2 15.9 5.8 19.2 37 37 A E H >> S+ 0 0 123 2,-0.2 4,-3.3 1,-0.2 3,-1.7 0.968 112.4 39.3 -48.3 -70.6 13.3 5.5 16.5 38 38 A E H <> S+ 0 0 50 -3,-0.6 4,-2.1 1,-0.3 -2,-0.2 0.914 115.4 49.8 -43.1 -62.6 11.4 8.7 17.6 39 39 A I H 3< S+ 0 0 0 -4,-1.0 -1,-0.3 1,-0.2 -2,-0.2 0.704 120.2 42.1 -53.6 -18.7 14.5 10.7 18.4 40 40 A A H XX>S+ 0 0 5 -3,-1.7 4,-2.2 -4,-1.4 3,-0.7 0.783 114.8 46.6 -97.7 -36.9 15.6 9.6 14.9 41 41 A N H 3<5S+ 0 0 129 -4,-3.3 2,-0.2 1,-0.2 -3,-0.2 0.972 114.6 43.9 -70.8 -55.8 12.3 10.0 13.0 42 42 A Q T 3<5S+ 0 0 115 -4,-2.1 -1,-0.2 1,-0.2 -3,-0.1 -0.009 125.4 36.8 -80.7 30.9 11.3 13.5 14.3 43 43 A L T <45S- 0 0 58 -3,-0.7 -1,-0.2 -2,-0.2 -2,-0.2 0.400 104.1-124.8-143.4 -42.3 14.9 14.7 13.8 44 44 A N T <5 + 0 0 130 -4,-2.2 2,-0.2 1,-0.3 -3,-0.2 0.872 59.0 113.0 81.3 97.3 16.1 12.9 10.7 45 45 A I S - 0 0 169 -2,-0.2 4,-1.5 1,-0.2 3,-0.4 -0.379 38.9-137.2 -59.2 124.9 20.2 7.2 11.0 47 47 A V H > S+ 0 0 54 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.705 103.6 62.4 -55.0 -20.6 18.7 5.5 14.0 48 48 A N H > S+ 0 0 74 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.959 104.7 40.5 -71.4 -53.8 22.0 3.8 14.3 49 49 A D H > S+ 0 0 60 -3,-0.4 4,-1.5 1,-0.2 -2,-0.2 0.687 113.8 59.1 -67.9 -17.4 24.1 6.9 14.9 50 50 A V H X S+ 0 0 0 -4,-1.5 4,-2.3 2,-0.2 -1,-0.2 0.908 107.3 43.0 -75.1 -45.3 21.2 8.0 17.1 51 51 A R H X S+ 0 0 101 -4,-1.9 4,-2.0 1,-0.2 -2,-0.2 0.775 109.2 60.7 -70.9 -26.1 21.6 4.9 19.3 52 52 A K H X S+ 0 0 123 -4,-1.7 4,-1.1 2,-0.2 -1,-0.2 0.918 107.0 44.4 -67.1 -41.7 25.3 5.6 19.2 53 53 A K H >X S+ 0 0 18 -4,-1.5 4,-1.9 1,-0.2 3,-1.3 0.986 109.8 55.9 -65.2 -56.9 24.8 9.0 20.8 54 54 A L H 3X S+ 0 0 0 -4,-2.3 4,-3.0 1,-0.3 5,-0.2 0.864 107.4 47.3 -43.2 -50.3 22.4 7.7 23.4 55 55 A N H 3X S+ 0 0 85 -4,-2.0 4,-1.9 1,-0.2 -1,-0.3 0.788 109.5 55.1 -66.8 -26.0 24.8 5.0 24.8 56 56 A L H X>S+ 0 0 0 -4,-1.9 4,-3.1 2,-0.2 3,-1.4 0.940 113.6 57.7 -70.3 -51.4 25.6 10.0 27.1 58 58 A E H 3<5S+ 0 0 73 -4,-3.0 -2,-0.2 -5,-0.3 -3,-0.2 0.887 102.4 55.6 -44.5 -47.4 24.1 7.1 29.0 59 59 A E H 3<5S+ 0 0 123 -4,-1.9 -1,-0.3 1,-0.2 -2,-0.2 0.839 113.6 40.1 -56.9 -36.1 27.6 6.0 29.9 60 60 A Q H <<5S- 0 0 85 -3,-1.4 -2,-0.2 -4,-0.8 -1,-0.2 0.802 120.0-108.9 -84.3 -31.5 28.2 9.5 31.4 61 61 A G T <5S+ 0 0 36 -4,-3.1 -3,-0.2 2,-0.2 -2,-0.1 0.734 82.1 120.8 109.3 31.5 24.8 9.7 33.0 62 62 A F S - 0 0 23 0, 0.0 2,-0.9 0, 0.0 3,-0.6 -0.770 20.9-142.1 -87.2 124.0 17.1 12.7 30.4 81 83 A N T 3> + 0 0 16 -2,-0.5 4,-0.7 -19,-0.4 3,-0.2 0.017 64.8 121.6 -76.0 35.4 18.5 12.2 34.0 82 84 A I H >> + 0 0 20 -2,-0.9 3,-1.7 1,-0.2 4,-0.6 0.923 65.3 57.7 -65.3 -45.6 18.2 15.9 34.6 83 85 A D H X4 S+ 0 0 134 -3,-0.6 3,-1.2 1,-0.3 -1,-0.2 0.866 105.8 53.4 -52.2 -34.4 15.9 15.6 37.7 84 86 A Q H 34 S+ 0 0 144 1,-0.3 -1,-0.3 2,-0.2 -2,-0.2 0.767 95.3 68.0 -70.7 -23.2 18.7 13.5 39.1 85 87 A I H << 0 0 64 -3,-1.7 -1,-0.3 -4,-0.7 -2,-0.2 0.650 360.0 360.0 -68.8 -13.3 20.9 16.5 38.3 86 88 A N << 0 0 116 -3,-1.2 -2,-0.2 -4,-0.6 -3,-0.1 0.487 360.0 360.0-126.5 360.0 18.9 18.2 41.0