==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 12-AUG-03 1Q60 . COMPND 2 MOLECULE: GENERAL TRANSCRIPTION FACTOR II-I; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR Y.DOI-KATAYAMA,F.HAYASHI,H.HIROTA,S.YOKOYAMA,RIKEN . 99 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6880.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 61.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 5.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 10.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 35 35.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 136 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 114.4 -1.1 -19.6 14.1 2 2 A S + 0 0 134 2,-0.0 0, 0.0 1,-0.0 0, 0.0 -0.794 360.0 80.4-151.4 101.9 -2.9 -16.3 14.8 3 3 A S - 0 0 120 -2,-0.3 2,-0.4 0, 0.0 3,-0.0 0.148 63.8-145.4-160.3 -65.4 -2.2 -13.2 12.8 4 4 A G + 0 0 53 58,-0.0 58,-0.1 59,-0.0 -2,-0.0 -0.917 54.3 9.4 121.4-146.9 -3.9 -13.0 9.4 5 5 A S + 0 0 35 -2,-0.4 58,-0.1 1,-0.1 57,-0.0 0.135 50.7 162.6 -57.9-177.9 -2.8 -11.5 6.1 6 6 A S S > S+ 0 0 98 57,-0.1 4,-1.4 -3,-0.0 -1,-0.1 0.088 70.1 39.5-165.5 -64.2 0.8 -10.4 5.6 7 7 A G H > S+ 0 0 39 2,-0.2 4,-3.9 1,-0.2 3,-0.3 0.965 111.8 56.0 -67.3 -55.3 1.8 -9.9 1.9 8 8 A L H > S+ 0 0 28 1,-0.3 4,-3.9 2,-0.2 5,-0.5 0.908 105.0 54.1 -41.4 -56.5 -1.5 -8.5 0.8 9 9 A K H > S+ 0 0 70 1,-0.2 4,-1.6 2,-0.2 -1,-0.3 0.912 114.7 40.5 -44.5 -53.3 -1.2 -5.8 3.4 10 10 A Q H X S+ 0 0 121 -4,-1.4 4,-2.3 -3,-0.3 5,-0.3 0.928 115.2 52.1 -62.4 -47.7 2.3 -5.0 2.0 11 11 A K H X S+ 0 0 103 -4,-3.9 4,-2.4 1,-0.3 -2,-0.2 0.963 111.9 44.3 -52.3 -59.9 1.1 -5.4 -1.6 12 12 A V H X S+ 0 0 0 -4,-3.9 4,-2.4 1,-0.2 -1,-0.3 0.812 109.1 63.7 -55.0 -31.0 -1.8 -3.0 -1.1 13 13 A E H X S+ 0 0 52 -4,-1.6 4,-2.5 -5,-0.5 -2,-0.2 0.983 105.5 39.1 -56.5 -65.2 0.7 -0.8 0.6 14 14 A N H X S+ 0 0 85 -4,-2.3 4,-4.2 1,-0.2 5,-0.3 0.878 110.8 64.6 -52.8 -40.9 2.9 -0.2 -2.4 15 15 A L H X S+ 0 0 22 -4,-2.4 4,-3.2 -5,-0.3 -1,-0.2 0.950 109.3 35.5 -45.7 -66.1 -0.3 0.1 -4.4 16 16 A F H X S+ 0 0 1 -4,-2.4 4,-3.4 2,-0.2 -2,-0.2 0.959 117.5 52.1 -53.4 -59.3 -1.5 3.1 -2.6 17 17 A N H X S+ 0 0 22 -4,-2.5 4,-2.1 1,-0.2 13,-2.0 0.907 114.3 45.0 -42.9 -53.8 2.0 4.6 -2.2 18 18 A E H X S+ 0 0 87 -4,-4.2 4,-3.0 11,-0.3 5,-0.3 0.975 110.4 51.5 -55.2 -62.8 2.5 4.2 -5.9 19 19 A K H X S+ 0 0 43 -4,-3.2 4,-2.8 -5,-0.3 -1,-0.2 0.873 107.7 56.9 -41.1 -47.3 -0.8 5.5 -6.9 20 20 A C H >X S+ 0 0 0 -4,-3.4 4,-1.7 2,-0.2 3,-1.0 0.967 109.3 42.0 -48.7 -67.7 0.0 8.5 -4.7 21 21 A G H 3X>S+ 0 0 0 -4,-2.1 5,-3.5 1,-0.3 4,-0.9 0.882 115.9 50.6 -46.5 -46.8 3.2 9.3 -6.6 22 22 A E H 3<5S+ 0 0 115 -4,-3.0 -1,-0.3 3,-0.3 -2,-0.2 0.816 102.9 61.7 -62.4 -31.6 1.4 8.6 -9.9 23 23 A A H <<5S+ 0 0 34 -4,-2.8 -1,-0.2 -3,-1.0 -2,-0.2 0.907 107.0 42.8 -60.6 -43.6 -1.3 11.0 -8.7 24 24 A L H <5S- 0 0 48 -4,-1.7 -1,-0.3 -3,-0.3 -2,-0.2 0.645 129.2-102.4 -76.0 -15.7 1.2 13.8 -8.6 25 25 A G T <5S+ 0 0 57 -4,-0.9 -3,-0.3 -5,-0.3 2,-0.2 0.715 75.7 141.3 98.4 28.9 2.5 12.5 -11.9 26 26 A L < - 0 0 55 -5,-3.5 -1,-0.2 -6,-0.2 4,-0.1 -0.482 54.3-139.1 -96.9 169.8 5.6 10.7 -10.5 27 27 A K S S+ 0 0 208 -2,-0.2 2,-0.2 2,-0.1 -5,-0.1 0.166 82.9 61.8-112.1 13.0 7.1 7.4 -11.6 28 28 A Q S S- 0 0 129 -10,-0.1 2,-0.3 -11,-0.1 -2,-0.2 -0.663 90.2 -87.2-127.7-177.4 7.8 6.4 -8.0 29 29 A A - 0 0 39 -2,-0.2 2,-0.4 -8,-0.1 -11,-0.3 -0.699 33.1-166.1 -96.4 148.5 6.0 5.7 -4.8 30 30 A V - 0 0 7 -13,-2.0 -9,-0.2 -2,-0.3 -10,-0.2 -0.976 34.9-100.5-139.3 121.6 5.1 8.4 -2.2 31 31 A K - 0 0 126 -2,-0.4 62,-0.1 1,-0.2 -17,-0.0 -0.093 47.1-109.8 -39.7 122.4 3.9 7.7 1.3 32 32 A V - 0 0 2 1,-0.1 2,-2.7 -19,-0.1 3,-0.3 -0.480 21.8-143.4 -64.2 112.2 0.2 8.1 1.2 33 33 A P >> + 0 0 18 0, 0.0 3,-2.1 0, 0.0 4,-1.1 -0.288 32.8 167.1 -75.0 55.4 -0.5 11.4 3.1 34 34 A F H 3> S+ 0 0 22 -2,-2.7 4,-2.0 1,-0.3 3,-0.4 0.804 71.9 64.8 -38.0 -38.7 -3.6 9.9 4.6 35 35 A A H 3>>S+ 0 0 67 1,-0.3 4,-4.3 -3,-0.3 5,-0.5 0.922 96.4 54.2 -52.6 -48.9 -3.5 12.8 6.9 36 36 A L H <>5S+ 0 0 26 -3,-2.1 4,-2.2 1,-0.3 8,-0.3 0.856 113.6 42.8 -53.7 -37.3 -4.1 15.1 4.0 37 37 A F H <5S+ 0 0 14 -4,-1.1 -1,-0.3 -3,-0.4 -2,-0.3 0.707 116.4 48.5 -81.0 -22.7 -7.1 13.0 3.2 38 38 A E H <5S+ 0 0 118 -4,-2.0 -2,-0.2 -3,-0.3 -3,-0.2 0.834 122.2 32.6 -84.1 -37.3 -8.1 12.9 6.9 39 39 A S H <5S+ 0 0 88 -4,-4.3 -3,-0.2 1,-0.2 -2,-0.2 0.851 134.5 29.2 -85.6 -40.4 -7.7 16.7 7.4 40 40 A F >X< + 0 0 89 -4,-2.2 4,-1.9 -5,-0.5 3,-0.5 -0.656 65.9 149.8-123.6 74.1 -8.8 17.7 3.9 41 41 A P T 34 + 0 0 76 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 0.715 69.1 69.4 -75.0 -22.3 -11.2 15.0 2.7 42 42 A E T 34 S+ 0 0 169 -3,-0.2 3,-0.1 1,-0.2 -5,-0.1 -0.189 113.7 25.6 -89.0 41.3 -13.0 17.6 0.6 43 43 A D T <4 S+ 0 0 26 -3,-0.5 38,-1.2 -2,-0.4 2,-0.4 0.223 118.4 51.3-164.0 -43.9 -10.0 17.9 -1.7 44 44 A F E < +A 80 0A 3 -4,-1.9 -1,-0.4 -8,-0.3 2,-0.3 -0.936 62.7 132.5-115.8 134.3 -8.1 14.6 -1.5 45 45 A Y E -A 79 0A 62 34,-1.4 34,-2.5 -2,-0.4 2,-0.4 -0.929 46.1-117.2-173.8 150.6 -9.6 11.2 -2.0 46 46 A V E -A 78 0A 13 -2,-0.3 32,-0.3 32,-0.2 2,-0.2 -0.804 30.2-166.0 -99.3 137.3 -9.1 7.9 -3.9 47 47 A E E +A 77 0A 104 30,-4.2 30,-3.4 -2,-0.4 -2,-0.0 -0.691 61.2 50.3-116.5 170.1 -11.6 6.7 -6.4 48 48 A G S S+ 0 0 37 1,-0.3 28,-0.2 28,-0.3 -1,-0.1 0.057 72.6 146.7 91.0 -24.1 -12.3 3.4 -8.1 49 49 A L - 0 0 30 28,-0.2 -1,-0.3 26,-0.1 3,-0.1 0.009 53.5-101.1 -42.6 151.4 -12.2 1.6 -4.8 50 50 A P > - 0 0 22 0, 0.0 3,-1.5 0, 0.0 -1,-0.1 -0.232 49.3 -73.7 -75.0 167.5 -14.6 -1.4 -4.6 51 51 A E T 3 S+ 0 0 182 1,-0.3 0, 0.0 -2,-0.0 0, 0.0 -0.255 119.1 8.9 -61.1 147.8 -18.0 -1.3 -2.8 52 52 A G T 3 S+ 0 0 68 1,-0.1 -1,-0.3 -3,-0.1 -3,-0.0 0.740 106.6 112.9 51.1 24.3 -17.9 -1.3 1.0 53 53 A V < - 0 0 9 -3,-1.5 -1,-0.1 15,-0.1 8,-0.0 -0.825 49.0-172.6-130.6 91.8 -14.2 -0.7 0.5 54 54 A P - 0 0 67 0, 0.0 2,-0.6 0, 0.0 -3,-0.0 -0.127 41.5 -97.3 -75.0 176.0 -13.0 2.7 1.7 55 55 A F S S+ 0 0 30 -9,-0.1 -8,-0.0 -6,-0.1 -9,-0.0 -0.234 77.0 137.1 -89.6 44.4 -9.6 4.2 1.2 56 56 A R - 0 0 115 -2,-0.6 4,-0.1 1,-0.2 -22,-0.0 -0.124 64.0 -64.7 -80.6-178.2 -8.6 3.2 4.7 57 57 A R > - 0 0 70 1,-0.1 4,-0.8 2,-0.1 3,-0.2 -0.416 33.9-136.3 -71.0 144.5 -5.3 1.6 5.8 58 58 A P T 4 S+ 0 0 6 0, 0.0 2,-0.9 0, 0.0 -1,-0.1 0.598 95.5 81.5 -75.0 -11.7 -4.5 -1.8 4.5 59 59 A S T 4 S+ 0 0 76 1,-0.2 -2,-0.1 -50,-0.1 3,-0.0 -0.295 100.1 34.0 -89.1 49.0 -3.3 -2.7 8.0 60 60 A T T 4 S+ 0 0 88 -2,-0.9 -1,-0.2 -3,-0.2 -51,-0.0 0.249 90.8 98.5-163.0 -43.3 -6.9 -3.4 9.1 61 61 A F S < S- 0 0 19 -4,-0.8 2,-0.1 1,-0.1 -52,-0.1 0.172 74.1-100.3 -49.8 177.1 -8.9 -4.8 6.2 62 62 A G > - 0 0 30 -58,-0.1 4,-1.4 1,-0.1 -2,-0.1 -0.295 31.0 -98.2 -95.9-177.2 -9.4 -8.6 5.9 63 63 A I H > S+ 0 0 100 2,-0.2 4,-1.2 3,-0.1 -57,-0.1 0.920 125.6 33.4 -67.2 -45.5 -7.7 -11.2 3.8 64 64 A P H > S+ 0 0 80 0, 0.0 4,-2.9 0, 0.0 3,-0.3 0.941 114.8 55.9 -75.0 -51.2 -10.5 -11.1 1.1 65 65 A R H > S+ 0 0 117 1,-0.3 4,-1.1 2,-0.2 -2,-0.2 0.818 105.2 57.0 -49.8 -33.7 -11.2 -7.4 1.5 66 66 A L H >X S+ 0 0 0 -4,-1.4 4,-1.8 1,-0.2 3,-0.7 0.948 108.7 43.2 -63.3 -50.8 -7.5 -6.9 0.8 67 67 A E H 3X S+ 0 0 88 -4,-1.2 4,-3.8 -3,-0.3 5,-0.2 0.867 103.2 67.5 -62.4 -38.1 -7.7 -8.7 -2.5 68 68 A K H 3X S+ 0 0 91 -4,-2.9 4,-0.7 1,-0.2 -1,-0.3 0.857 105.4 44.3 -49.5 -38.6 -11.0 -7.0 -3.3 69 69 A I H X< S+ 0 0 0 -4,-1.1 3,-2.4 -3,-0.7 -2,-0.2 0.988 112.3 47.9 -69.9 -62.8 -8.8 -3.8 -3.6 70 70 A L H >< S+ 0 0 9 -4,-1.8 3,-2.3 1,-0.3 4,-0.2 0.893 101.3 67.6 -43.3 -49.5 -6.0 -5.3 -5.6 71 71 A R H 3< S+ 0 0 169 -4,-3.8 -1,-0.3 1,-0.3 3,-0.2 0.828 110.0 36.4 -39.9 -40.6 -8.6 -6.8 -7.9 72 72 A N T + 0 0 97 -39,-0.2 3,-0.8 1,-0.1 -1,-0.2 -0.749 63.2 156.3-121.7 81.5 -4.6 20.6 -4.0 83 83 A P G >> + 0 0 55 0, 0.0 3,-1.8 0, 0.0 4,-1.3 0.736 69.3 72.2 -75.0 -24.3 -1.3 19.1 -5.2 84 84 A E G 34 S+ 0 0 146 1,-0.3 4,-0.3 2,-0.2 -2,-0.1 0.693 96.2 53.1 -62.9 -18.6 0.5 22.2 -4.0 85 85 A M G <4 S+ 0 0 72 -3,-0.8 4,-0.3 1,-0.1 -1,-0.3 0.514 101.5 60.2 -92.7 -8.6 -0.2 21.0 -0.6 86 86 A F T X> S+ 0 0 0 -3,-1.8 4,-2.1 2,-0.2 3,-1.7 0.807 82.0 78.8 -86.4 -34.5 1.4 17.6 -1.4 87 87 A E H 3X S+ 0 0 141 -4,-1.3 4,-3.2 1,-0.3 5,-0.2 0.845 88.6 60.4 -40.0 -43.8 4.8 18.9 -2.2 88 88 A T H 3> S+ 0 0 86 -4,-0.3 4,-3.9 2,-0.2 -1,-0.3 0.902 107.4 44.0 -52.5 -46.1 5.3 19.1 1.5 89 89 A A H <> S+ 0 0 24 -3,-1.7 4,-3.6 -4,-0.3 -2,-0.2 0.960 114.3 47.7 -64.0 -53.6 4.8 15.4 1.8 90 90 A I H < S+ 0 0 59 -4,-2.1 -2,-0.2 1,-0.2 -1,-0.2 0.826 117.9 45.0 -56.2 -32.7 7.0 14.6 -1.2 91 91 A K H < S+ 0 0 166 -4,-3.2 -2,-0.2 -5,-0.4 -1,-0.2 0.917 113.0 48.8 -76.5 -47.0 9.5 17.0 0.3 92 92 A E H < S+ 0 0 147 -4,-3.9 -2,-0.2 -5,-0.2 -3,-0.2 0.949 93.6 89.4 -56.9 -53.5 9.2 15.5 3.8 93 93 A S < - 0 0 58 -4,-3.6 -63,-0.0 -5,-0.1 0, 0.0 -0.102 52.1-179.0 -46.6 141.9 9.5 12.0 2.5 94 94 A S + 0 0 77 4,-0.1 3,-0.3 5,-0.0 5,-0.2 0.762 17.1 157.8-110.9 -52.7 13.1 10.8 2.5 95 95 A G S S- 0 0 54 1,-0.2 2,-2.8 3,-0.1 -65,-0.0 0.008 72.1 -24.7 53.5-164.9 13.1 7.3 1.1 96 96 A P S S+ 0 0 148 0, 0.0 -1,-0.2 0, 0.0 2,-0.0 -0.316 131.3 65.0 -75.1 58.0 16.1 5.8 -0.5 97 97 A S - 0 0 93 -2,-2.8 2,-1.4 -3,-0.3 0, 0.0 -0.295 67.0-159.9-179.7 83.2 17.4 9.2 -1.4 98 98 A S 0 0 120 1,-0.2 -4,-0.1 -2,-0.0 -3,-0.1 -0.596 360.0 360.0 -75.4 94.4 18.4 11.6 1.4 99 99 A G 0 0 120 -2,-1.4 -1,-0.2 -5,-0.2 -5,-0.0 -0.183 360.0 360.0-121.4 360.0 18.3 14.9 -0.4