==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=17-JUN-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN TRANSPORT 19-JAN-11 3QDP . COMPND 2 MOLECULE: PROTEIN TOLA; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR C.LI . 88 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5076.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 70.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 18.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 26 29.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 334 A G 0 0 74 0, 0.0 6,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -74.8 -29.6 36.3 3.3 2 335 A A + 0 0 64 4,-0.1 73,-0.1 68,-0.1 5,-0.1 0.555 360.0 127.5 -63.2 -9.0 -25.9 36.1 4.2 3 336 A D > - 0 0 80 1,-0.1 4,-2.4 3,-0.1 5,-0.2 -0.206 62.7-138.2 -72.0 140.4 -26.8 33.9 7.2 4 337 A I H > S+ 0 0 69 1,-0.2 4,-3.0 2,-0.2 5,-0.2 0.872 105.3 51.3 -59.8 -32.8 -25.0 30.5 7.7 5 338 A N H > S+ 0 0 120 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.908 110.2 50.2 -70.1 -38.9 -28.3 28.8 8.7 6 339 A N H > S+ 0 0 72 2,-0.2 4,-2.0 1,-0.2 -2,-0.2 0.950 113.4 45.0 -60.4 -46.1 -29.9 30.1 5.6 7 340 A Y H X S+ 0 0 1 -4,-2.4 4,-2.2 2,-0.2 -2,-0.2 0.915 109.2 53.9 -68.3 -46.5 -27.0 28.9 3.4 8 341 A A H X S+ 0 0 9 -4,-3.0 4,-2.1 1,-0.2 -1,-0.2 0.934 109.4 51.4 -52.4 -43.6 -26.9 25.5 5.1 9 342 A G H X S+ 0 0 33 -4,-2.1 4,-2.6 1,-0.2 -2,-0.2 0.881 108.0 52.6 -60.2 -36.9 -30.7 25.2 4.2 10 343 A Q H X S+ 0 0 66 -4,-2.0 4,-2.1 2,-0.2 -1,-0.2 0.865 106.8 50.1 -71.7 -35.2 -30.0 26.1 0.7 11 344 A I H X S+ 0 0 0 -4,-2.2 4,-1.9 2,-0.2 -1,-0.2 0.918 112.8 47.6 -64.7 -44.5 -27.4 23.4 0.3 12 345 A X H X S+ 0 0 88 -4,-2.1 4,-2.6 1,-0.2 -2,-0.2 0.897 112.5 50.3 -57.4 -42.4 -29.8 20.8 1.8 13 346 A S H X S+ 0 0 78 -4,-2.6 4,-2.4 1,-0.2 -1,-0.2 0.872 107.9 52.2 -64.6 -38.9 -32.5 22.1 -0.6 14 347 A A H < S+ 0 0 11 -4,-2.1 4,-0.4 2,-0.2 52,-0.3 0.890 111.9 46.0 -68.6 -40.8 -30.3 21.9 -3.6 15 348 A I H >< S+ 0 0 1 -4,-1.9 3,-2.0 1,-0.2 4,-0.4 0.960 112.2 51.3 -61.9 -47.5 -29.4 18.2 -2.8 16 349 A E H >< S+ 0 0 82 -4,-2.6 3,-1.6 1,-0.3 6,-0.2 0.854 100.4 62.7 -62.3 -34.7 -33.1 17.3 -2.1 17 350 A S T 3< S+ 0 0 72 -4,-2.4 -1,-0.3 1,-0.3 -2,-0.2 0.689 110.3 39.8 -62.4 -20.4 -34.1 18.8 -5.5 18 351 A X T < S+ 0 0 110 -3,-2.0 2,-0.7 -4,-0.4 -1,-0.3 0.313 93.6 101.8-106.4 4.3 -32.0 16.2 -7.2 19 352 A F S X S- 0 0 22 -3,-1.6 3,-1.0 -4,-0.4 2,-0.2 -0.805 72.2-133.6 -97.4 108.7 -32.9 13.3 -4.9 20 353 A Y T 3 S- 0 0 210 -2,-0.7 -2,-0.1 1,-0.2 41,-0.1 -0.445 82.9 -14.2 -62.5 125.1 -35.6 11.0 -6.4 21 354 A D T > S+ 0 0 73 -2,-0.2 3,-1.4 1,-0.1 -1,-0.2 0.869 76.2 170.6 53.2 46.7 -38.3 10.2 -3.8 22 355 A A G X + 0 0 8 -3,-1.0 3,-2.1 1,-0.3 -1,-0.1 0.776 66.6 71.6 -61.3 -26.4 -36.4 11.6 -0.8 23 356 A S G > S+ 0 0 84 1,-0.3 3,-3.3 2,-0.2 -1,-0.3 0.856 77.6 75.4 -65.4 -23.1 -39.5 11.3 1.4 24 357 A S G < S+ 0 0 88 -3,-1.4 -1,-0.3 1,-0.3 -2,-0.2 0.729 100.9 47.1 -59.6 -15.6 -39.2 7.5 1.4 25 358 A Y G X S+ 0 0 58 -3,-2.1 3,-2.8 -4,-0.2 -1,-0.3 0.296 78.7 144.1-104.9 4.6 -36.4 8.3 3.9 26 359 A A T < S+ 0 0 65 -3,-3.3 3,-0.1 1,-0.3 -3,-0.1 -0.202 70.3 30.9 -40.9 123.8 -38.3 10.9 6.0 27 360 A G T 3 S+ 0 0 75 61,-1.2 -1,-0.3 1,-0.4 2,-0.2 0.164 98.6 92.4 106.3 -28.6 -37.0 10.2 9.5 28 361 A K < - 0 0 99 -3,-2.8 -1,-0.4 22,-0.1 2,-0.4 -0.580 57.4-150.5 -94.9 176.3 -33.4 9.1 8.8 29 362 A T - 0 0 47 -2,-0.2 22,-0.5 58,-0.2 2,-0.4 -0.979 8.8-165.7-144.4 138.2 -30.4 11.4 8.8 30 363 A a E -AB 50 86A 0 56,-1.6 56,-3.6 -2,-0.4 2,-0.6 -0.989 13.0-148.2-123.1 128.9 -27.1 11.3 7.0 31 364 A T E -AB 49 85A 32 18,-2.6 17,-2.0 -2,-0.4 18,-0.7 -0.882 22.2-167.0 -87.2 116.0 -24.2 13.6 8.1 32 365 A L E -AB 47 84A 0 52,-2.9 52,-2.5 -2,-0.6 2,-0.6 -0.772 17.8-140.4-102.9 151.4 -22.2 14.4 5.0 33 366 A R E -AB 46 83A 68 13,-3.1 13,-1.6 -2,-0.3 2,-0.3 -0.955 31.5-177.5-109.6 119.6 -18.8 16.0 4.9 34 367 A I E -AB 45 82A 2 48,-2.7 48,-1.6 -2,-0.6 2,-0.4 -0.832 22.6-163.2-123.6 153.8 -18.7 18.4 2.1 35 368 A K E -A 44 0A 83 9,-2.0 8,-2.7 -2,-0.3 9,-1.2 -0.976 17.3-173.8-134.7 114.2 -16.0 20.7 0.6 36 369 A L E -A 42 0A 1 43,-1.9 6,-0.2 -2,-0.4 5,-0.1 -0.792 20.6-126.8-108.5 161.4 -17.2 23.5 -1.7 37 370 A A > - 0 0 13 4,-1.8 3,-1.8 -2,-0.3 6,-0.0 -0.466 41.7 -95.5 -93.5 168.4 -15.3 26.0 -3.8 38 371 A P T 3 S+ 0 0 85 0, 0.0 38,-0.1 0, 0.0 -1,-0.1 0.702 127.5 52.2 -67.4 -13.8 -15.9 29.8 -3.4 39 372 A D T 3 S- 0 0 102 30,-0.2 30,-0.1 2,-0.1 37,-0.0 0.514 124.4-101.0 -92.3 -8.5 -18.4 29.6 -6.3 40 373 A G < + 0 0 2 -3,-1.8 27,-0.2 1,-0.3 3,-0.1 0.232 68.9 149.6 111.6 -12.1 -20.4 26.7 -4.8 41 374 A M - 0 0 119 -5,-0.1 -4,-1.8 1,-0.1 -1,-0.3 -0.257 52.7-117.8 -56.6 136.6 -19.0 23.8 -6.8 42 375 A L E +A 36 0A 34 23,-0.2 -6,-0.2 -6,-0.2 3,-0.1 -0.585 36.1 175.8 -69.5 138.3 -19.0 20.5 -4.9 43 376 A L E - 0 0 96 -8,-2.7 2,-0.3 1,-0.5 -7,-0.2 0.676 63.5 -12.0-114.3 -31.2 -15.3 19.5 -4.6 44 377 A D E -A 35 0A 53 -9,-1.2 -9,-2.0 2,-0.0 -1,-0.5 -0.961 56.5-174.3-168.5 148.5 -15.7 16.5 -2.5 45 378 A I E +A 34 0A 10 -2,-0.3 -11,-0.2 -11,-0.2 -13,-0.0 -0.976 7.8 169.3-153.4 138.7 -18.3 14.7 -0.3 46 379 A K E -A 33 0A 112 -13,-1.6 -13,-3.1 -2,-0.3 2,-0.1 -0.982 35.5-106.0-145.1 152.2 -18.2 11.6 2.0 47 380 A P E -A 32 0A 66 0, 0.0 -15,-0.2 0, 0.0 3,-0.1 -0.411 25.4-179.5 -69.8 156.7 -20.5 10.1 4.5 48 381 A E E - 0 0 108 -17,-2.0 2,-0.3 1,-0.4 -16,-0.2 0.295 55.1 -73.6-127.7 -16.8 -19.8 10.5 8.3 49 382 A G E S+A 31 0A 29 -18,-0.7 -18,-2.6 2,-0.1 -1,-0.4 -0.855 75.3 107.3 143.8-170.2 -22.8 8.5 9.7 50 383 A G E S-A 30 0A 52 -2,-0.3 -20,-0.2 -20,-0.2 5,-0.1 -0.174 94.8 -1.2 69.8 178.9 -26.5 8.3 10.5 51 384 A D > - 0 0 28 -22,-0.5 4,-2.0 1,-0.2 -2,-0.1 0.091 62.0-153.9 -38.3 123.8 -28.6 5.9 8.3 52 385 A P H > S+ 0 0 108 0, 0.0 4,-1.6 0, 0.0 5,-0.2 0.748 94.4 59.5 -77.4 -23.3 -26.3 4.2 5.7 53 386 A A H > S+ 0 0 38 2,-0.2 4,-1.7 1,-0.1 3,-0.3 0.982 107.8 44.4 -61.8 -59.7 -29.3 3.7 3.3 54 387 A L H > S+ 0 0 0 1,-0.2 4,-3.4 2,-0.2 5,-0.3 0.934 108.6 62.4 -49.3 -42.7 -29.9 7.5 3.3 55 388 A a H X S+ 0 0 7 -4,-2.0 4,-2.6 1,-0.2 5,-0.2 0.857 102.4 44.2 -58.2 -48.7 -26.1 8.2 2.8 56 389 A Q H X S+ 0 0 129 -4,-1.6 4,-2.1 -3,-0.3 -1,-0.2 0.951 117.3 47.9 -69.1 -36.9 -25.5 6.5 -0.5 57 390 A A H X S+ 0 0 15 -4,-1.7 4,-2.5 2,-0.2 -2,-0.2 0.959 114.6 44.7 -61.5 -50.2 -28.7 8.1 -1.8 58 391 A A H X S+ 0 0 0 -4,-3.4 4,-3.2 1,-0.2 5,-0.2 0.919 111.9 54.3 -63.0 -37.2 -27.8 11.6 -0.5 59 392 A L H X S+ 0 0 23 -4,-2.6 4,-1.3 -5,-0.3 -1,-0.2 0.917 108.8 46.6 -62.0 -45.0 -24.3 11.2 -1.8 60 393 A A H < S+ 0 0 55 -4,-2.1 4,-0.4 -5,-0.2 -1,-0.2 0.903 114.8 48.1 -63.7 -43.7 -25.5 10.4 -5.3 61 394 A A H >X S+ 0 0 5 -4,-2.5 3,-2.0 1,-0.2 4,-0.7 0.905 104.3 58.0 -64.1 -45.4 -28.0 13.3 -5.2 62 395 A A H >< S+ 0 0 3 -4,-3.2 3,-1.3 1,-0.3 -1,-0.2 0.881 97.1 64.4 -55.3 -36.3 -25.5 15.9 -4.0 63 396 A K T 3< S+ 0 0 147 -4,-1.3 -1,-0.3 1,-0.3 -2,-0.2 0.732 108.7 39.5 -58.8 -21.0 -23.3 15.1 -7.0 64 397 A L T <4 S+ 0 0 119 -3,-2.0 -1,-0.3 -4,-0.4 -2,-0.2 0.533 91.6 119.1 -99.9 -9.8 -26.0 16.4 -9.3 65 398 A A << - 0 0 19 -3,-1.3 2,-0.9 -4,-0.7 -23,-0.2 -0.286 61.2-139.7 -67.8 143.9 -27.0 19.4 -7.0 66 399 A K - 0 0 181 -52,-0.3 -1,-0.1 -25,-0.1 -25,-0.1 -0.879 29.4-165.5 -90.6 90.1 -26.7 23.0 -8.3 67 400 A I - 0 0 17 -2,-0.9 -56,-0.1 -27,-0.2 -57,-0.0 -0.671 16.1-126.0 -83.1 126.1 -25.3 24.5 -5.0 68 401 A P - 0 0 53 0, 0.0 -1,-0.1 0, 0.0 -54,-0.0 -0.270 35.7 -88.1 -71.7 165.9 -25.4 28.3 -4.9 69 402 A K - 0 0 156 1,-0.1 -30,-0.2 -30,-0.1 -29,-0.1 -0.404 50.7 -96.2 -69.7 143.7 -22.2 30.3 -4.1 70 403 A P - 0 0 13 0, 0.0 -1,-0.1 0, 0.0 -68,-0.1 -0.263 34.0-134.6 -56.3 141.3 -21.6 30.8 -0.4 71 404 A P S S+ 0 0 56 0, 0.0 2,-0.3 0, 0.0 3,-0.1 0.315 76.8 16.8 -88.6 15.2 -22.9 34.3 0.2 72 405 A S S > S- 0 0 43 1,-0.1 4,-2.4 -69,-0.0 5,-0.2 -0.957 79.3-104.7-171.5 156.0 -20.0 35.6 2.3 73 406 A Q H > S+ 0 0 164 -2,-0.3 4,-2.2 2,-0.2 5,-0.1 0.886 118.7 52.3 -54.9 -46.8 -16.4 34.9 3.0 74 407 A A H > S+ 0 0 71 2,-0.2 4,-1.2 1,-0.2 -1,-0.2 0.897 110.9 46.9 -62.3 -41.3 -17.2 33.5 6.6 75 408 A V H > S+ 0 0 8 1,-0.2 4,-2.4 2,-0.2 3,-0.2 0.899 111.6 52.1 -72.6 -38.3 -19.9 31.1 5.2 76 409 A Y H X S+ 0 0 51 -4,-2.4 4,-1.4 1,-0.2 -2,-0.2 0.913 105.8 54.2 -52.0 -45.0 -17.4 30.0 2.5 77 410 A E H < S+ 0 0 78 -4,-2.2 -1,-0.2 2,-0.2 -2,-0.2 0.776 110.6 47.3 -70.2 -27.0 -14.8 29.3 5.1 78 411 A V H >< S+ 0 0 54 -4,-1.2 3,-1.7 -3,-0.2 -2,-0.2 0.972 116.2 40.9 -67.6 -62.5 -17.3 27.0 6.9 79 412 A F H 3< S+ 0 0 10 -4,-2.4 -43,-1.9 1,-0.3 3,-0.3 0.436 90.1 83.6 -81.6 1.8 -18.5 25.0 3.9 80 413 A X T 3< S- 0 0 137 -4,-1.4 -1,-0.3 1,-0.4 2,-0.2 0.673 121.9 -0.4 -72.1 -18.3 -15.0 24.6 2.2 81 414 A N S < S+ 0 0 65 -3,-1.7 -1,-0.4 -5,-0.2 -46,-0.2 -0.740 98.7 119.0-162.8 129.0 -14.9 21.7 4.6 82 415 A A E -B 34 0A 6 -48,-1.6 -48,-2.7 -3,-0.3 2,-0.2 -0.866 56.0-104.7 177.7 148.3 -17.7 21.0 7.0 83 416 A P E -B 33 0A 63 0, 0.0 2,-0.4 0, 0.0 -50,-0.3 -0.565 32.5-169.7 -82.3 152.8 -20.3 18.3 8.0 84 417 A L E -B 32 0A 6 -52,-2.5 -52,-2.9 -2,-0.2 2,-0.6 -0.969 17.8-136.1-143.3 124.3 -23.9 18.9 7.0 85 418 A D E -B 31 0A 64 -2,-0.4 2,-0.6 -54,-0.2 -54,-0.3 -0.721 14.5-159.0 -82.1 120.3 -26.9 16.8 8.2 86 419 A F E +B 30 0A 1 -56,-3.6 -56,-1.6 -2,-0.6 -28,-0.1 -0.890 16.6 173.6 -94.6 117.1 -29.2 15.9 5.4 87 420 A K 0 0 116 -2,-0.6 -58,-0.2 -58,-0.2 -61,-0.1 -0.769 360.0 360.0-129.4 89.5 -32.7 15.1 6.9 88 421 A P 0 0 41 0, 0.0 -61,-1.2 0, 0.0 -65,-0.1 0.004 360.0 360.0 -68.7 360.0 -35.4 14.5 4.3