==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=11-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 19-AUG-97 1QYP . COMPND 2 MOLECULE: RNA POLYMERASE II; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS CELER; . AUTHOR B.WANG,D.N.M.JONES,B.P.KAINE,M.A.WEISS . 57 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4878.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 21 36.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 26.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 3.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 7.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 133 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 86.0 12.0 0.7 -20.7 2 2 A S + 0 0 122 1,-0.1 2,-0.1 0, 0.0 0, 0.0 0.539 360.0 52.8-137.3 -39.2 10.0 2.6 -23.3 3 3 A H + 0 0 165 2,-0.0 2,-0.3 0, 0.0 -1,-0.1 -0.408 60.5 175.1 -95.9 177.1 6.3 1.8 -22.7 4 4 A M - 0 0 139 -2,-0.1 0, 0.0 -3,-0.1 0, 0.0 -0.973 25.6-153.1-166.6 177.8 4.2 2.1 -19.5 5 5 A E + 0 0 166 -2,-0.3 2,-0.2 2,-0.0 -2,-0.0 -0.240 31.2 154.0-163.9 64.4 0.7 1.8 -18.0 6 6 A Q - 0 0 128 0, 0.0 2,-0.4 0, 0.0 -2,-0.0 -0.637 21.3-161.4 -96.7 157.3 0.1 4.0 -14.9 7 7 A D + 0 0 107 -2,-0.2 -2,-0.0 1,-0.1 0, 0.0 -0.997 25.8 150.6-139.3 142.0 -3.3 5.3 -13.8 8 8 A L + 0 0 67 -2,-0.4 -1,-0.1 19,-0.0 37,-0.0 0.552 69.5 63.9-134.7 -53.6 -4.3 8.1 -11.4 9 9 A K S S+ 0 0 214 3,-0.0 2,-0.1 0, 0.0 -2,-0.0 0.806 108.4 56.0 -49.3 -24.9 -7.6 9.7 -12.3 10 10 A T S S+ 0 0 80 2,-0.1 -3,-0.0 17,-0.0 0, 0.0 -0.182 75.3 70.0 -94.9-167.4 -9.0 6.2 -11.5 11 11 A L S S- 0 0 75 16,-0.1 18,-0.1 -2,-0.1 2,-0.0 0.767 89.8 -93.8 63.4 115.9 -8.6 4.2 -8.3 12 12 A P - 0 0 85 0, 0.0 16,-0.8 0, 0.0 2,-0.2 -0.326 44.5-131.2 -59.3 134.1 -10.6 5.5 -5.3 13 13 A T E -A 27 0A 76 14,-0.2 2,-0.3 31,-0.0 14,-0.3 -0.512 16.8-151.4 -87.5 159.3 -8.3 7.8 -3.2 14 14 A T E -A 26 0A 43 12,-3.4 12,-2.0 -2,-0.2 2,-0.8 -0.922 25.8-102.5-127.8 154.6 -8.0 7.6 0.6 15 15 A K E +A 25 0A 187 -2,-0.3 2,-0.2 10,-0.2 10,-0.2 -0.640 68.0 121.6 -79.7 113.4 -7.2 10.2 3.2 16 16 A I - 0 0 40 -2,-0.8 2,-0.3 8,-0.7 11,-0.0 -0.850 54.2-101.7-152.6-172.7 -3.5 9.8 4.2 17 17 A T - 0 0 84 -2,-0.2 7,-0.2 29,-0.1 6,-0.1 -0.803 19.1-129.7-121.8 165.6 -0.3 11.8 4.3 18 18 A C > - 0 0 4 5,-1.6 4,-1.3 -2,-0.3 5,-0.1 -0.935 3.6-160.7-118.9 113.8 2.8 11.9 2.1 19 19 A P T 4 S+ 0 0 110 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.499 91.2 51.3 -67.4 -1.9 6.3 11.6 3.8 20 20 A K T 4 S+ 0 0 149 31,-0.1 -2,-0.0 3,-0.0 -3,-0.0 0.859 129.3 4.6-100.7 -69.7 7.7 13.2 0.6 21 21 A C T 4 S- 0 0 57 30,-0.0 0, 0.0 0, 0.0 0, 0.0 0.573 97.4-114.9 -95.5 -7.1 5.9 16.4 -0.4 22 22 A G < + 0 0 53 -4,-1.3 0, 0.0 1,-0.1 0, 0.0 0.647 54.9 166.5 85.9 13.3 3.7 16.5 2.7 23 23 A N - 0 0 23 1,-0.1 -5,-1.6 -6,-0.1 -1,-0.1 0.030 35.9-138.3 -52.4 172.8 0.4 16.0 0.7 24 24 A D S S+ 0 0 112 -7,-0.2 -8,-0.7 23,-0.1 2,-0.3 0.344 76.2 39.5-119.6 5.5 -2.7 15.0 2.7 25 25 A T E +A 15 0A 37 -10,-0.2 22,-2.4 19,-0.0 2,-0.3 -0.960 56.1 179.3-148.0 166.3 -4.2 12.4 0.4 26 26 A A E -AB 14 46A 0 -12,-2.0 -12,-3.4 20,-0.4 20,-0.4 -0.991 31.9-103.6-162.5 159.2 -3.2 9.4 -1.8 27 27 A Y E -AB 13 45A 39 18,-4.3 18,-0.6 -2,-0.3 2,-0.3 -0.270 40.1-157.3 -78.6 174.7 -4.7 6.7 -4.0 28 28 A W E + B 0 44A 91 -16,-0.8 2,-0.3 16,-0.2 16,-0.2 -0.952 23.8 150.0-160.1 141.1 -4.8 3.2 -2.7 29 29 A W E - B 0 43A 68 14,-1.3 14,-1.3 -2,-0.3 2,-0.3 -0.941 43.1 -95.1-155.7 172.8 -5.1 -0.5 -3.8 30 30 A E E - B 0 42A 134 -2,-0.3 12,-0.3 12,-0.2 2,-0.2 -0.696 27.1-172.4 -98.5 153.4 -4.0 -3.9 -2.6 31 31 A M E - B 0 41A 81 10,-3.7 10,-1.0 -2,-0.3 2,-0.2 -0.679 6.0-171.7-144.6 87.3 -0.7 -5.6 -3.6 32 32 A Q + 0 0 123 8,-0.3 2,-0.1 -2,-0.2 3,-0.1 -0.519 10.1 172.7 -80.0 147.6 -0.3 -9.3 -2.4 33 33 A T - 0 0 101 5,-0.2 -1,-0.1 -2,-0.2 7,-0.0 -0.196 43.6 -68.9-126.8-140.1 3.1 -11.0 -2.9 34 34 A R S S- 0 0 240 -2,-0.1 -1,-0.2 5,-0.0 2,-0.1 0.845 73.3 -77.8 -87.5 -91.0 4.6 -14.3 -1.8 35 35 A A S S+ 0 0 89 4,-0.1 -3,-0.0 -3,-0.1 0, 0.0 -0.429 86.1 95.4-179.8 98.1 5.3 -14.5 1.9 36 36 A G S S+ 0 0 77 -2,-0.1 -1,-0.0 0, 0.0 -2,-0.0 0.190 96.3 9.7-178.9 32.1 8.2 -12.9 3.8 37 37 A D S S- 0 0 100 -3,-0.1 -2,-0.0 0, 0.0 0, 0.0 -0.007 126.2 -7.9-179.4 -59.5 7.1 -9.6 5.2 38 38 A E - 0 0 64 3,-0.0 -5,-0.2 19,-0.0 2,-0.1 -0.676 61.5-133.7-164.3 104.2 3.4 -8.8 5.0 39 39 A P S S+ 0 0 87 0, 0.0 -7,-0.1 0, 0.0 -4,-0.1 -0.347 86.5 3.4 -60.2 130.8 0.8 -10.9 3.2 40 40 A S S S- 0 0 54 1,-0.1 2,-0.3 -2,-0.1 -8,-0.3 0.892 81.6-169.1 57.3 101.2 -1.5 -8.6 1.1 41 41 A T E -B 31 0A 10 -10,-1.0 -10,-3.7 16,-0.2 2,-0.5 -0.878 16.2-134.0-121.1 154.5 -0.2 -5.0 1.4 42 42 A I E -B 30 0A 26 -2,-0.3 13,-1.6 -12,-0.3 2,-0.3 -0.914 13.9-150.7-111.8 124.0 -1.9 -1.7 0.3 43 43 A F E -BC 29 54A 49 -14,-1.3 -14,-1.3 -2,-0.5 2,-0.6 -0.704 7.0-154.2 -91.2 140.2 0.2 0.9 -1.6 44 44 A Y E -BC 28 53A 41 9,-0.8 9,-1.0 -2,-0.3 2,-0.9 -0.896 2.8-162.2-117.5 108.4 -0.8 4.5 -1.2 45 45 A K E -BC 27 52A 31 -18,-0.6 -18,-4.3 -2,-0.6 7,-0.3 -0.742 24.8-127.7 -90.5 109.4 0.0 7.0 -4.0 46 46 A C E -B 26 0A 1 5,-3.2 -20,-0.4 -2,-0.9 2,-0.3 -0.104 12.5-129.8 -49.1 150.1 -0.1 10.5 -2.7 47 47 A T S S+ 0 0 45 -22,-2.4 -1,-0.1 3,-0.1 -21,-0.1 -0.239 93.6 46.7-100.0 47.3 -2.4 12.8 -4.8 48 48 A K S S+ 0 0 158 -2,-0.3 -1,-0.1 -23,-0.1 -22,-0.1 0.342 122.7 13.5-145.1 -69.7 0.2 15.6 -5.2 49 49 A C S S- 0 0 57 2,-0.1 -2,-0.1 0, 0.0 -4,-0.0 0.726 100.6-113.4 -90.5 -22.3 3.8 14.7 -6.1 50 50 A G + 0 0 35 1,-0.2 2,-0.3 -4,-0.1 -3,-0.1 0.906 61.5 147.6 91.5 52.9 2.9 11.1 -7.1 51 51 A H - 0 0 69 -5,-0.1 -5,-3.2 -7,-0.0 2,-0.4 -0.902 24.5-167.1-119.0 148.5 4.7 9.0 -4.4 52 52 A T E +C 45 0A 42 -2,-0.3 -7,-0.2 -7,-0.3 2,-0.1 -0.992 11.6 168.3-139.5 142.9 3.5 5.7 -3.0 53 53 A W E -C 44 0A 48 -9,-1.0 -9,-0.8 -2,-0.4 2,-0.3 -0.314 35.0 -93.2-125.6-150.0 4.5 3.5 -0.0 54 54 A R E -C 43 0A 114 -11,-0.2 -11,-0.2 -2,-0.1 -13,-0.0 -0.965 22.5-157.5-136.6 154.4 2.8 0.5 1.6 55 55 A S - 0 0 12 -13,-1.6 -1,-0.1 -2,-0.3 -12,-0.0 0.146 27.7-114.3-102.9-138.6 0.4 -0.2 4.4 56 56 A Y 0 0 152 -15,-0.1 -15,-0.1 -2,-0.0 -2,-0.0 0.118 360.0 360.0-153.8 25.7 -0.2 -3.4 6.5 57 57 A E 0 0 184 -19,-0.1 -16,-0.2 -15,-0.1 -27,-0.0 0.406 360.0 360.0-125.5 360.0 -3.7 -4.6 5.7