==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=11-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOMAL PROTEIN 17-AUG-93 1RIP . COMPND 2 MOLECULE: RIBOSOMAL PROTEIN S17; . SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; . AUTHOR B.L.GOLDEN,D.W.HOFFMAN,V.RAMAKRISHNAN,S.W.WHITE . 81 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7140.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 26 32.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 11.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 8.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 5 A Q 0 0 210 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 140.0 4.9 13.5 6.5 2 6 A R - 0 0 235 1,-0.1 2,-0.2 0, 0.0 0, 0.0 0.987 360.0 -45.6 -61.0 -77.8 5.4 14.4 2.8 3 7 A K S S+ 0 0 132 2,-0.0 2,-0.3 58,-0.0 -1,-0.1 -0.507 84.2 96.3-135.4-154.6 4.0 11.2 1.1 4 8 A V - 0 0 42 -2,-0.2 2,-0.3 -3,-0.1 55,-0.2 -0.708 37.9-168.3 101.8-152.0 4.3 7.4 1.4 5 9 A Y B -A 58 0A 26 53,-0.8 53,-1.3 -2,-0.3 2,-0.2 -0.979 2.5-164.2 156.0-153.4 1.8 5.1 3.2 6 10 A V + 0 0 56 -2,-0.3 2,-0.5 51,-0.3 51,-0.2 -0.758 33.0 76.4 154.7 159.5 1.9 1.5 4.3 7 11 A G + 0 0 3 12,-0.2 49,-2.9 -2,-0.2 15,-0.2 -0.910 47.9 88.1 129.3-124.9 -0.2 -1.4 5.5 8 12 A R E S-B 55 0B 98 -2,-0.5 2,-0.9 47,-0.3 47,-0.2 0.199 95.0 -13.3 -29.0 138.1 -2.5 -3.8 3.8 9 13 A V E -B 54 0B 1 45,-1.5 45,-0.9 43,-0.2 3,-0.2 -0.610 45.7-160.1 74.1-101.9 -1.3 -6.9 2.3 10 14 A V S S+ 0 0 8 -2,-0.9 9,-1.1 1,-0.6 2,-0.2 0.137 96.3 35.8 98.9 -17.3 2.5 -7.1 1.8 11 15 A S + 0 0 3 7,-0.3 -1,-0.6 32,-0.2 9,-0.2 -0.588 64.2 132.4-141.6-164.8 1.4 -9.7 -0.7 12 16 A D - 0 0 54 32,-1.1 31,-0.2 -2,-0.2 33,-0.1 -0.034 66.4-101.5 139.2 -36.7 -1.9 -9.5 -2.9 13 17 A K + 0 0 121 1,-0.1 31,-0.3 38,-0.0 -2,-0.0 0.146 55.9 148.7 93.8 144.8 -0.8 -10.5 -6.4 14 18 A M S S- 0 0 101 29,-0.2 29,-0.2 28,-0.1 -1,-0.1 0.279 75.5 -88.7 156.5 46.7 -0.3 -7.9 -9.2 15 19 A D S S+ 0 0 145 1,-0.2 29,-0.1 27,-0.1 27,-0.0 0.779 121.4 78.7 35.6 27.6 2.4 -9.2 -11.6 16 20 A K S S- 0 0 108 27,-0.8 -1,-0.2 0, 0.0 28,-0.2 0.635 86.0-139.1-123.0 -60.9 4.7 -7.4 -9.2 17 21 A T + 0 0 71 26,-1.8 27,-0.2 1,-0.1 -6,-0.1 0.737 60.9 12.5 97.3 100.1 5.2 -9.6 -6.1 18 22 A I S S+ 0 0 81 2,-0.1 -7,-0.3 23,-0.0 2,-0.2 0.086 70.8 109.8 88.9 156.3 5.2 -8.2 -2.5 19 23 A T - 0 0 6 -9,-1.1 38,-0.7 25,-0.1 2,-0.3 -0.702 58.7-114.1 145.6 -94.3 4.1 -4.7 -1.5 20 24 A V - 0 0 0 22,-1.7 21,-0.3 21,-1.3 2,-0.3 -0.936 16.1-143.9 158.3-139.1 0.9 -3.9 0.6 21 25 A L - 0 0 28 -2,-0.3 19,-0.3 19,-0.2 35,-0.2 -0.733 7.5-168.9 147.5 166.6 -2.3 -2.1 -0.2 22 26 A V B -D 39 0C 21 17,-1.1 17,-2.2 1,-0.3 2,-0.5 0.061 48.1 -85.7 174.7 54.5 -4.3 0.1 2.1 23 27 A E - 0 0 91 15,-0.3 15,-0.3 1,-0.1 -1,-0.3 -0.573 56.4-102.6 71.7-113.8 -7.8 1.1 0.7 24 28 A T + 0 0 33 -2,-0.5 15,-0.4 1,-0.3 13,-0.1 -0.115 69.3 27.5 150.9 110.7 -7.8 4.3 -1.5 25 29 A Y S S- 0 0 81 13,-2.3 -1,-0.3 12,-0.5 11,-0.1 -0.287 92.3 -64.3 108.9 165.7 -8.8 8.0 -0.9 26 30 A K - 0 0 167 9,-0.2 -2,-0.2 11,-0.1 -1,-0.1 0.909 54.7-146.5 -47.3 -87.5 -9.0 10.4 2.1 27 31 A K - 0 0 111 10,-0.1 -1,-0.1 11,-0.1 9,-0.1 -0.079 19.9-176.6 143.8 -34.9 -11.7 8.5 4.1 28 32 A H - 0 0 56 1,-0.1 0, 0.0 2,-0.1 0, 0.0 0.017 61.3 -52.4 37.0-155.6 -13.6 11.4 5.9 29 33 A P S S- 0 0 99 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 0.968 73.0-106.4 -76.4 -56.0 -16.4 9.9 8.2 30 34 A L + 0 0 101 5,-0.0 4,-0.2 0, 0.0 3,-0.1 0.067 66.0 145.3 150.8 -24.6 -18.2 7.6 5.8 31 35 A Y S S- 0 0 219 1,-0.2 -3,-0.0 2,-0.1 3,-0.0 0.559 79.1 -76.5 -2.5 -84.1 -21.5 9.6 5.2 32 36 A G S S+ 0 0 54 0, 0.0 -1,-0.2 0, 0.0 3,-0.1 0.197 88.8 127.1 174.3 37.2 -21.9 8.5 1.6 33 37 A K S S- 0 0 151 1,-0.2 2,-1.7 -3,-0.1 -2,-0.1 -0.159 77.2-115.7 -98.4 40.4 -19.5 10.5 -0.6 34 38 A R + 0 0 203 -4,-0.2 2,-0.9 1,-0.1 -1,-0.2 -0.441 48.0 176.8 65.4 -91.0 -18.1 7.2 -2.1 35 39 A V - 0 0 1 -2,-1.7 -9,-0.2 -3,-0.1 3,-0.2 -0.773 28.0-146.0 99.9 -92.7 -14.6 7.7 -0.7 36 40 A K - 0 0 118 -2,-0.9 -11,-0.3 1,-0.1 3,-0.1 -0.537 41.7-113.7 115.2 -50.4 -12.5 4.6 -1.6 37 41 A Y - 0 0 81 -14,-0.2 -12,-0.5 1,-0.2 2,-0.4 0.759 57.0 -48.6 99.5 34.9 -10.6 4.9 1.8 38 42 A S S S- 0 0 44 -15,-0.3 -13,-2.3 -3,-0.2 -15,-0.3 -0.670 87.5 -59.2 114.4 -79.7 -6.8 5.8 1.4 39 43 A K B -D 22 0C 92 -17,-2.2 -17,-1.1 -2,-0.4 2,-0.2 -0.871 33.6-142.7-173.4-153.0 -4.6 3.8 -1.1 40 44 A K - 0 0 123 -19,-0.3 2,-0.3 -2,-0.2 -19,-0.2 -0.835 6.6-159.4 168.1 144.9 -3.3 0.4 -2.3 41 45 A Y - 0 0 8 -21,-0.3 -21,-1.3 1,-0.3 -31,-0.3 -0.950 28.1-100.2-155.7 129.0 -0.1 -1.2 -3.8 42 46 A K + 0 0 63 -2,-0.3 -22,-1.7 -23,-0.2 -32,-0.3 0.674 49.7 137.1 -19.1-157.2 0.7 -4.4 -5.8 43 47 A A - 0 0 0 -24,-0.2 -26,-1.8 -29,-0.2 -27,-0.8 -0.960 25.6-158.3 136.9-154.4 2.3 -7.6 -4.3 44 48 A H - 0 0 37 -31,-0.3 -32,-1.1 -2,-0.3 2,-0.8 -0.961 48.0 -42.0 171.9-151.5 1.7 -11.5 -4.6 45 49 A D - 0 0 75 -2,-0.3 2,-1.7 -34,-0.2 4,-0.2 -0.838 44.7-172.5-108.6 96.5 2.3 -14.7 -2.8 46 50 A E - 0 0 101 -2,-0.8 -1,-0.1 1,-0.2 -35,-0.0 -0.319 67.4 -50.3 -85.2 57.4 5.9 -14.6 -1.3 47 51 A H S > S+ 0 0 158 -2,-1.7 3,-1.8 1,-0.0 -1,-0.2 0.205 129.8 51.0 89.0 145.2 5.9 -18.2 -0.1 48 52 A N T 3 S- 0 0 153 1,-0.3 -2,-0.1 -3,-0.1 -1,-0.0 0.639 125.0 -84.5 69.1 8.5 3.2 -19.9 1.9 49 53 A E T 3 - 0 0 144 -4,-0.2 -1,-0.3 2,-0.0 -3,-0.1 0.611 58.0-142.5 69.0 6.5 0.8 -18.5 -0.7 50 54 A A < - 0 0 32 -3,-1.8 -5,-0.2 1,-0.1 -39,-0.0 -0.069 17.8-163.4 37.7 -99.0 1.0 -15.3 1.5 51 55 A K S S- 0 0 166 -7,-0.4 -1,-0.1 -2,-0.0 -42,-0.1 0.901 73.9 -7.9 87.9 78.6 -2.7 -14.3 1.1 52 56 A V S S- 0 0 77 -8,-0.2 -43,-0.2 1,-0.1 -42,-0.1 0.994 78.5-138.1 64.9 72.7 -2.8 -10.6 2.3 53 57 A G - 0 0 28 -9,-0.2 2,-0.4 1,-0.1 -43,-0.3 0.790 39.8-120.7 -28.3 -45.1 0.7 -10.3 3.6 54 58 A D E -B 9 0B 60 -45,-0.9 -45,-1.5 -43,-0.1 2,-0.4 -0.944 62.4 -21.4 135.3-109.7 -0.9 -8.3 6.6 55 59 A I E S+BC 8 76B 79 21,-1.7 21,-0.7 -2,-0.4 -47,-0.3 -0.788 73.7 146.3-137.2 92.7 0.3 -4.7 7.2 56 60 A V - 0 0 5 -49,-2.9 20,-0.5 -2,-0.4 2,-0.2 0.654 31.9-140.5 -94.7-107.3 3.7 -3.8 5.8 57 61 A K + 0 0 65 -38,-0.7 2,-0.3 18,-0.3 -51,-0.3 -0.920 38.0 126.3 158.7 174.2 4.6 -0.3 4.4 58 62 A I B -A 5 0A 7 -53,-1.3 -53,-0.8 -2,-0.2 2,-0.2 -0.916 40.0-133.2 151.2-118.9 6.5 1.6 1.6 59 63 A M - 0 0 15 -2,-0.3 11,-0.1 -55,-0.2 13,-0.1 -0.690 14.7-172.5 162.1-105.1 5.2 4.3 -0.8 60 64 A E - 0 0 60 -2,-0.2 10,-0.2 2,-0.1 -1,-0.1 0.942 29.5-147.8 81.9 52.7 5.7 4.4 -4.6 61 65 A T - 0 0 36 1,-0.1 3,-0.1 8,-0.1 -2,-0.0 -0.008 33.0 -79.3 -47.9 160.5 4.2 7.8 -5.2 62 66 A R - 0 0 212 1,-0.1 -1,-0.1 2,-0.1 2,-0.1 -0.387 54.7 -97.6 -66.9 145.8 2.4 8.2 -8.6 63 67 A P + 0 0 82 0, 0.0 -1,-0.1 0, 0.0 5,-0.1 -0.352 41.1 175.7 -62.7 136.5 4.8 8.8 -11.6 64 68 A L S S- 0 0 122 3,-0.2 4,-0.1 -3,-0.1 -2,-0.1 0.325 73.7 -42.2-125.5 4.4 5.0 12.5 -12.5 65 69 A S S S- 0 0 105 2,-0.2 3,-0.0 0, 0.0 0, 0.0 -0.276 127.3 -0.7 168.0 -69.9 7.6 12.3 -15.2 66 70 A A S S+ 0 0 91 1,-0.1 2,-0.3 2,-0.0 0, 0.0 -0.315 99.0 96.8-143.2 56.9 10.6 10.0 -14.6 67 71 A T + 0 0 65 1,-0.1 -3,-0.2 -7,-0.0 -2,-0.2 -0.818 21.5 143.3-148.6 104.6 10.1 8.4 -11.1 68 72 A K + 0 0 145 -2,-0.3 -1,-0.1 -5,-0.1 -2,-0.0 0.503 45.4 102.4-119.2 -9.0 8.5 4.9 -10.7 69 73 A R - 0 0 198 1,-0.1 2,-0.2 -9,-0.0 -8,-0.1 -0.143 63.9-135.1 -65.9 172.0 10.5 3.5 -7.8 70 74 A F - 0 0 61 -10,-0.2 2,-0.2 -11,-0.1 -1,-0.1 -0.699 2.8-125.1-125.6-179.7 8.9 3.6 -4.3 71 75 A R + 0 0 138 -2,-0.2 2,-0.3 1,-0.0 -12,-0.1 -0.675 45.2 110.0-116.8 177.0 9.7 4.5 -0.8 72 76 A L - 0 0 69 -2,-0.2 -14,-0.2 -14,-0.2 -1,-0.0 -0.836 49.8-139.7 164.7-132.1 9.4 2.5 2.5 73 77 A V - 0 0 104 -2,-0.3 -1,-0.1 -16,-0.2 2,-0.1 -0.024 61.6-110.6 144.6 -15.3 11.5 0.7 5.2 74 78 A E + 0 0 97 -55,-0.0 2,-0.2 2,-0.0 -16,-0.1 -0.293 45.1 167.4 91.6 179.2 9.2 -2.3 5.4 75 79 A I + 0 0 89 -18,-0.2 -18,-0.3 -2,-0.1 -19,-0.2 -0.835 16.2 144.1 150.8-177.2 6.8 -3.6 8.0 76 80 A V B S-C 55 0B 28 -21,-0.7 -21,-1.7 -20,-0.5 2,-0.3 -0.103 73.8 -4.2 146.1 -41.4 4.0 -6.4 7.8 77 81 A E S S- 0 0 116 -23,-0.1 2,-0.1 3,-0.1 -23,-0.0 -0.951 71.2 -99.6-173.7 153.6 4.0 -8.1 11.2 78 82 A K S S+ 0 0 178 -2,-0.3 -3,-0.0 1,-0.1 3,-0.0 -0.451 93.6 41.8 -79.4 155.6 5.9 -8.2 14.5 79 83 A A S S+ 0 0 91 -2,-0.1 -1,-0.1 1,-0.0 0, 0.0 0.935 83.5 90.5 72.2 89.2 8.5 -11.0 15.2 80 84 A V 0 0 100 0, 0.0 -3,-0.1 0, 0.0 -1,-0.0 0.214 360.0 360.0 154.0 64.4 10.5 -11.4 11.9 81 85 A R 0 0 305 -3,-0.0 -2,-0.0 0, 0.0 0, 0.0 0.936 360.0 360.0 88.6 360.0 13.6 -9.2 11.8