==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-FEB-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOMAL PROTEIN 31-MAY-94 1RIS . COMPND 2 MOLECULE: RIBOSOMAL PROTEIN S6; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; . AUTHOR M.LINDAHL,L.A.SVENSSON,A.LILJAS,S.E.SEDELNIKOVA,I.A.ELISEIKI . 97 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6254.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 77 79.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 34 35.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 23.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 117 0, 0.0 2,-0.3 0, 0.0 34,-0.0 0.000 360.0 360.0 360.0 127.7 8.6 21.1 40.7 2 2 A R E -A 67 0A 112 65,-2.4 65,-2.5 2,-0.0 2,-0.4 -0.956 360.0-112.6-135.1 152.5 6.4 22.0 37.7 3 3 A R E +A 66 0A 83 -2,-0.3 90,-2.6 63,-0.2 2,-0.3 -0.754 40.1 174.3 -96.2 130.9 5.0 19.8 35.0 4 4 A Y E -AB 65 92A 25 61,-2.0 61,-2.6 -2,-0.4 2,-0.5 -0.869 29.4-131.9-131.6 160.0 6.4 20.3 31.4 5 5 A E E -AB 64 91A 40 86,-2.9 86,-2.4 -2,-0.3 2,-0.5 -0.979 20.2-156.0-114.8 125.7 6.1 18.7 28.0 6 6 A V E -AB 63 90A 1 57,-2.6 57,-2.0 -2,-0.5 2,-0.5 -0.951 5.0-164.7-107.9 122.6 9.4 18.0 26.3 7 7 A N E -AB 62 89A 40 82,-2.9 82,-2.1 -2,-0.5 2,-0.4 -0.952 9.2-175.1-110.8 114.6 9.2 17.8 22.5 8 8 A I E -AB 61 88A 1 53,-2.7 53,-2.6 -2,-0.5 2,-0.5 -0.950 10.7-161.6-115.3 130.6 12.3 16.2 20.9 9 9 A V E -AB 60 87A 1 78,-2.7 77,-3.0 -2,-0.4 78,-1.5 -0.974 16.2-167.7-111.7 124.4 12.8 16.0 17.1 10 10 A L E -AB 59 85A 0 49,-2.9 49,-2.8 -2,-0.5 75,-0.2 -0.753 37.6 -76.6-108.7 157.7 15.5 13.5 16.0 11 11 A N > - 0 0 22 73,-2.1 3,-0.7 -2,-0.3 47,-0.1 -0.316 40.8-140.4 -41.6 122.6 17.2 12.7 12.8 12 12 A P T 3 S+ 0 0 24 0, 0.0 -1,-0.2 0, 0.0 46,-0.1 0.603 91.2 65.3 -71.0 -12.1 14.6 10.8 10.6 13 13 A N T 3 + 0 0 118 46,-0.0 2,-0.3 2,-0.0 -2,-0.1 -0.045 69.8 121.9-105.3 27.6 17.3 8.4 9.2 14 14 A L < - 0 0 27 -3,-0.7 2,-0.2 70,-0.1 -4,-0.0 -0.687 57.0-129.3 -90.3 144.5 18.4 6.5 12.3 15 15 A D >> - 0 0 83 -2,-0.3 4,-2.4 1,-0.1 3,-0.8 -0.552 37.2 -92.6 -80.5 169.7 18.1 2.7 12.6 16 16 A Q H 3> S+ 0 0 178 1,-0.3 4,-2.3 2,-0.2 5,-0.2 0.768 124.4 48.8 -57.8 -33.1 16.4 1.1 15.6 17 17 A S H 3> S+ 0 0 87 2,-0.2 4,-1.9 1,-0.2 -1,-0.3 0.867 112.5 49.3 -80.6 -25.2 19.6 0.6 17.7 18 18 A Q H <> S+ 0 0 78 -3,-0.8 4,-2.1 2,-0.2 -2,-0.2 0.924 112.3 49.4 -69.7 -40.3 20.6 4.2 17.1 19 19 A L H X S+ 0 0 21 -4,-2.4 4,-2.2 2,-0.2 -2,-0.2 0.927 109.6 49.3 -63.9 -48.5 17.1 5.3 18.0 20 20 A A H X S+ 0 0 47 -4,-2.3 4,-2.2 1,-0.2 -1,-0.2 0.887 110.9 52.3 -62.0 -37.2 17.1 3.2 21.3 21 21 A L H X S+ 0 0 84 -4,-1.9 4,-2.1 2,-0.2 -1,-0.2 0.906 107.8 48.9 -62.9 -46.5 20.5 4.7 22.2 22 22 A E H X S+ 0 0 4 -4,-2.1 4,-2.0 2,-0.2 -2,-0.2 0.908 111.3 53.0 -61.3 -39.0 19.4 8.3 21.7 23 23 A K H X S+ 0 0 47 -4,-2.2 4,-2.5 1,-0.2 -2,-0.2 0.903 107.2 50.3 -63.1 -42.4 16.4 7.4 23.9 24 24 A E H X S+ 0 0 133 -4,-2.2 4,-2.2 2,-0.2 5,-0.2 0.916 110.2 49.2 -63.7 -39.3 18.6 6.1 26.6 25 25 A I H X S+ 0 0 38 -4,-2.1 4,-2.1 1,-0.2 -1,-0.2 0.880 110.5 51.8 -66.7 -36.6 20.8 9.2 26.7 26 26 A I H X S+ 0 0 4 -4,-2.0 4,-2.5 2,-0.2 -2,-0.2 0.933 109.7 49.2 -68.1 -46.0 17.6 11.4 26.8 27 27 A Q H X S+ 0 0 75 -4,-2.5 4,-2.7 1,-0.2 5,-0.2 0.920 112.0 47.2 -60.9 -42.1 16.3 9.4 29.9 28 28 A R H X S+ 0 0 159 -4,-2.2 4,-2.5 2,-0.2 -1,-0.2 0.896 111.7 51.0 -68.3 -35.8 19.6 9.6 31.8 29 29 A A H X S+ 0 0 8 -4,-2.1 4,-0.9 -5,-0.2 -2,-0.2 0.943 111.2 50.3 -65.9 -35.8 19.7 13.4 31.0 30 30 A L H ><>S+ 0 0 1 -4,-2.5 5,-2.3 2,-0.2 3,-1.2 0.962 113.3 43.3 -62.2 -53.6 16.2 13.6 32.3 31 31 A E H ><5S+ 0 0 128 -4,-2.7 3,-1.5 1,-0.3 -1,-0.2 0.883 110.8 56.6 -61.0 -39.2 16.9 11.7 35.6 32 32 A N H 3<5S+ 0 0 110 -4,-2.5 -1,-0.3 1,-0.3 -2,-0.2 0.655 105.1 51.1 -70.8 -15.6 20.1 13.6 36.0 33 33 A Y T <<5S- 0 0 39 -3,-1.2 -1,-0.3 -4,-0.9 -2,-0.2 0.186 125.8 -95.3-102.8 15.9 18.4 17.0 35.9 34 34 A G T < 5S+ 0 0 35 -3,-1.5 2,-0.4 1,-0.2 -3,-0.2 0.614 71.3 154.2 89.5 10.7 15.8 16.0 38.5 35 35 A A < - 0 0 10 -5,-2.3 2,-0.7 -6,-0.2 -1,-0.2 -0.593 36.9-154.1 -85.0 134.1 12.9 14.9 36.2 36 36 A R E -C 66 0A 129 30,-2.9 30,-1.6 -2,-0.4 2,-0.7 -0.893 22.4-143.6 -93.1 111.1 10.2 12.4 37.1 37 37 A V E +C 65 0A 45 -2,-0.7 28,-0.2 28,-0.2 3,-0.1 -0.684 28.6 168.8 -82.6 116.8 9.2 11.0 33.7 38 38 A E E + 0 0 54 26,-2.6 2,-0.3 -2,-0.7 27,-0.2 0.680 63.0 8.8-100.6 -20.1 5.5 10.4 33.8 39 39 A K E -C 64 0A 62 25,-1.4 25,-2.6 2,-0.0 2,-0.4 -0.959 55.6-169.9-162.0 140.0 4.6 9.7 30.1 40 40 A V E -C 63 0A 56 -2,-0.3 2,-0.4 23,-0.2 23,-0.2 -0.996 7.0-171.6-131.9 134.4 6.7 9.1 26.9 41 41 A E E -C 62 0A 92 21,-3.0 21,-2.7 -2,-0.4 2,-0.7 -0.997 15.9-151.5-131.2 137.6 5.1 8.9 23.4 42 42 A E E +C 61 0A 85 -2,-0.4 19,-0.2 19,-0.2 -2,-0.0 -0.935 20.0 178.0-101.2 104.4 7.0 7.9 20.3 43 43 A L E - 0 0 78 17,-2.2 18,-0.2 -2,-0.7 2,-0.2 0.776 22.8-147.7 -90.2 -26.6 5.2 9.9 17.6 44 44 A G E -C 60 0A 15 16,-1.5 16,-2.9 2,-0.0 2,-0.2 -0.525 44.4 -8.9 97.0-166.9 7.1 8.9 14.5 45 45 A L E +C 59 0A 96 14,-0.2 2,-0.3 -2,-0.2 14,-0.2 -0.521 58.9 165.2 -80.5 143.0 7.8 10.9 11.3 46 46 A R E -C 58 0A 141 12,-1.8 12,-2.1 -2,-0.2 2,-0.5 -0.955 41.5-104.7-148.2 155.2 6.3 14.2 10.6 47 47 A R E -C 57 0A 189 -2,-0.3 10,-0.3 10,-0.2 12,-0.0 -0.774 41.8-123.5 -86.6 128.4 7.1 16.9 8.1 48 48 A L E - 0 0 16 8,-1.7 -1,-0.1 -2,-0.5 0, 0.0 -0.225 12.7-121.1 -68.6 153.5 8.8 19.9 9.8 49 49 A A E S+ 0 0 98 1,-0.2 -1,-0.1 2,-0.0 -2,-0.0 0.783 104.1 2.3 -63.4 -30.5 7.4 23.5 9.6 50 50 A Y E S- 0 0 140 5,-0.1 -1,-0.2 6,-0.0 5,-0.1 -0.962 96.5 -92.0-151.2 148.9 10.9 24.3 8.0 51 51 A P E - 0 0 75 0, 0.0 2,-0.4 0, 0.0 3,-0.1 -0.304 31.9-160.5 -66.8 146.9 13.9 22.0 7.2 52 52 A I E > S+C 55 0A 32 3,-2.2 3,-1.8 5,-0.2 5,-0.2 -0.990 79.5 0.9-128.7 130.9 16.6 21.4 9.7 53 53 A A T 3 S- 0 0 74 -2,-0.4 -1,-0.1 1,-0.3 33,-0.0 0.813 130.8 -64.6 55.5 38.9 20.0 20.1 8.5 54 54 A K T 3 S+ 0 0 192 1,-0.2 -1,-0.3 -3,-0.1 0, 0.0 0.659 112.8 124.9 53.9 26.9 18.5 20.1 5.0 55 55 A D E < - C 0 52A 26 -3,-1.8 -3,-2.2 1,-0.1 -1,-0.2 -0.932 47.2-166.0-112.9 120.7 16.1 17.5 6.3 56 56 A P E S+ 0 0 64 0, 0.0 -8,-1.7 0, 0.0 2,-0.3 0.344 71.9 53.2 -89.5 3.7 12.3 18.3 5.9 57 57 A Q E - C 0 47A 70 -10,-0.3 2,-0.3 -5,-0.2 -10,-0.2 -0.940 61.7-173.0-134.0 159.2 11.2 15.5 8.2 58 58 A G E - C 0 46A 0 -12,-2.1 -12,-1.8 -2,-0.3 2,-0.6 -0.961 29.6-113.7-151.5 163.1 12.0 14.5 11.7 59 59 A Y E -AC 10 45A 53 -49,-2.8 -49,-2.9 -2,-0.3 2,-0.4 -0.904 39.1-142.7-101.2 121.6 11.2 11.7 14.1 60 60 A F E +AC 9 44A 22 -16,-2.9 -17,-2.2 -2,-0.6 -16,-1.5 -0.721 22.2 177.3 -97.9 136.2 9.2 13.0 17.0 61 61 A L E -AC 8 42A 2 -53,-2.6 -53,-2.7 -2,-0.4 2,-0.4 -0.978 8.8-166.9-126.4 137.4 9.3 12.0 20.7 62 62 A W E -AC 7 41A 24 -21,-2.7 -21,-3.0 -2,-0.4 2,-0.4 -0.976 3.2-172.1-126.0 143.8 7.2 13.7 23.5 63 63 A Y E -AC 6 40A 0 -57,-2.0 -57,-2.6 -2,-0.4 2,-0.6 -0.998 17.0-151.1-134.6 139.5 7.6 13.4 27.3 64 64 A Q E +AC 5 39A 1 -25,-2.6 -26,-2.6 -2,-0.4 -25,-1.4 -0.970 34.7 169.6-107.3 120.6 5.4 14.5 30.1 65 65 A V E -AC 4 37A 0 -61,-2.6 -61,-2.0 -2,-0.6 2,-0.4 -0.848 35.3-145.7-126.8 164.1 7.8 15.3 33.1 66 66 A E E +AC 3 36A 37 -30,-1.6 -30,-2.9 -2,-0.3 -63,-0.2 -0.995 42.8 145.3-125.8 119.5 7.7 16.9 36.5 67 67 A M E -A 2 0A 1 -65,-2.5 -65,-2.4 -2,-0.4 2,-0.4 -0.956 55.7 -77.6-150.1 166.1 11.0 18.6 37.3 68 68 A P >> - 0 0 34 0, 0.0 3,-2.4 0, 0.0 4,-0.7 -0.576 36.9-139.0 -66.8 126.9 12.5 21.7 39.1 69 69 A E H >> S+ 0 0 100 -2,-0.4 3,-0.8 1,-0.3 4,-0.5 0.817 99.6 65.0 -58.1 -28.6 11.9 24.8 36.9 70 70 A D H 34 S+ 0 0 120 1,-0.2 -1,-0.3 2,-0.1 4,-0.2 0.572 104.0 47.5 -71.2 -9.4 15.4 26.1 37.7 71 71 A R H <> S+ 0 0 80 -3,-2.4 4,-2.3 2,-0.1 -1,-0.2 0.594 86.8 88.3-103.5 -12.9 16.9 23.1 35.8 72 72 A V H S+ 0 0 65 -3,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.868 110.7 50.8 -75.4 -32.6 20.1 23.5 31.5 75 75 A L H X S+ 0 0 0 -4,-2.3 4,-2.6 2,-0.2 5,-0.2 0.928 108.2 50.8 -65.4 -45.0 18.4 20.3 30.5 76 76 A A H X S+ 0 0 5 -4,-2.6 4,-1.6 1,-0.2 -2,-0.2 0.931 111.2 50.6 -59.6 -41.7 17.3 21.7 27.1 77 77 A R H < S+ 0 0 165 -4,-2.2 4,-0.4 -5,-0.2 -1,-0.2 0.895 109.6 49.2 -57.6 -47.8 20.9 22.7 26.5 78 78 A E H >< S+ 0 0 78 -4,-1.9 3,-1.5 1,-0.2 4,-0.3 0.935 110.6 50.1 -60.2 -48.1 22.2 19.3 27.4 79 79 A L H >< S+ 0 0 6 -4,-2.6 3,-1.0 1,-0.3 -1,-0.2 0.819 103.7 61.6 -62.3 -29.3 19.7 17.6 25.0 80 80 A R T 3< S+ 0 0 122 -4,-1.6 -1,-0.3 -5,-0.2 -2,-0.2 0.599 89.7 68.5 -77.7 -6.6 20.7 19.9 22.2 81 81 A I T < S+ 0 0 122 -3,-1.5 2,-0.5 -4,-0.4 -1,-0.2 0.585 72.9 97.8 -92.2 -4.7 24.3 18.8 22.1 82 82 A R S X S- 0 0 71 -3,-1.0 3,-1.8 -4,-0.3 -60,-0.0 -0.692 76.6-135.9 -78.7 131.1 23.6 15.4 20.7 83 83 A D T 3 S+ 0 0 145 -2,-0.5 -1,-0.1 1,-0.3 -3,-0.0 0.799 101.2 54.9 -58.8 -33.0 24.1 15.6 17.0 84 84 A N T 3 S+ 0 0 35 -74,-0.1 -73,-2.1 -73,-0.1 2,-0.7 0.500 83.4 95.2 -84.1 -2.2 21.0 13.6 16.2 85 85 A V E < +B 10 0A 15 -3,-1.8 -75,-0.2 -75,-0.2 3,-0.1 -0.833 48.8 177.2 -90.3 113.4 18.7 15.9 18.2 86 86 A R E + 0 0 49 -77,-3.0 2,-0.3 -2,-0.7 -76,-0.2 0.748 64.4 1.9 -87.6 -30.6 17.3 18.3 15.6 87 87 A R E -B 9 0A 64 -78,-1.5 -78,-2.7 -8,-0.1 2,-0.4 -0.961 53.9-167.9-162.6 138.2 15.0 20.3 17.9 88 88 A V E +B 8 0A 8 -2,-0.3 2,-0.4 -80,-0.2 -80,-0.2 -0.994 11.8 174.6-126.1 134.5 14.0 20.5 21.6 89 89 A M E -B 7 0A 99 -82,-2.1 -82,-2.9 -2,-0.4 2,-0.5 -0.967 9.2-167.6-143.6 125.1 11.1 22.5 22.8 90 90 A V E +B 6 0A 39 -2,-0.4 2,-0.3 -84,-0.2 -84,-0.2 -0.959 11.5 175.1-111.8 126.2 9.9 22.5 26.4 91 91 A V E -B 5 0A 51 -86,-2.4 -86,-2.9 -2,-0.5 2,-0.2 -0.911 38.6 -97.0-125.6 156.8 6.5 24.0 27.2 92 92 A K E -B 4 0A 127 -2,-0.3 -88,-0.3 -88,-0.2 2,-0.2 -0.498 46.6-109.0 -66.6 141.1 4.5 24.1 30.5 93 93 A S + 0 0 18 -90,-2.6 -90,-0.1 -2,-0.2 -1,-0.1 -0.501 39.1 175.4 -73.2 128.5 1.9 21.3 30.7 94 94 A Q S S+ 0 0 160 -2,-0.2 -1,-0.2 1,-0.2 -90,-0.0 0.774 77.2 20.5-101.3 -34.7 -1.7 22.7 30.4 95 95 A E S S- 0 0 171 2,-0.0 -1,-0.2 0, 0.0 -2,-0.0 -0.762 86.8-158.1-134.8 78.3 -3.8 19.5 30.3 96 96 A P 0 0 71 0, 0.0 -91,-0.0 0, 0.0 -32,-0.0 -0.316 360.0 360.0 -69.7 149.6 -1.7 16.7 31.8 97 97 A F 0 0 162 -58,-0.0 -59,-0.0 0, 0.0 -2,-0.0 -0.696 360.0 360.0 -77.0 360.0 -2.2 13.1 31.3