==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 18-NOV-03 1RIY . COMPND 2 MOLECULE: HU DNA-BINDING PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; . AUTHOR C.KAVOUNIS,K.PETRATOS,P.TUCKER,C.E.VORGIAS . 71 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5675.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 73.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 15.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 4.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 33 46.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 4.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 155 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 127.5 20.2 14.8 7.8 2 2 A N > - 0 0 98 1,-0.0 4,-2.5 0, 0.0 5,-0.2 -0.448 360.0 -91.7 -97.4 179.4 19.3 12.5 10.7 3 3 A K H > S+ 0 0 100 1,-0.2 4,-2.8 2,-0.2 5,-0.2 0.908 124.9 52.2 -61.6 -43.6 21.5 11.3 13.6 4 4 A K H > S+ 0 0 68 2,-0.2 4,-2.6 1,-0.2 -1,-0.2 0.922 111.6 45.3 -57.0 -45.6 22.6 8.1 11.7 5 5 A E H > S+ 0 0 74 2,-0.2 4,-2.7 1,-0.2 5,-0.2 0.874 112.1 53.3 -66.5 -36.1 23.7 10.1 8.6 6 6 A L H X S+ 0 0 70 -4,-2.5 4,-2.4 2,-0.2 5,-0.3 0.942 110.0 46.9 -62.5 -49.0 25.4 12.6 10.9 7 7 A I H X S+ 0 0 13 -4,-2.8 4,-2.9 1,-0.2 -2,-0.2 0.939 113.9 48.8 -58.4 -48.0 27.4 9.8 12.6 8 8 A D H X S+ 0 0 54 -4,-2.6 4,-2.2 2,-0.2 -2,-0.2 0.905 112.6 45.9 -59.8 -45.8 28.2 8.3 9.2 9 9 A R H X S+ 0 0 101 -4,-2.7 4,-2.2 2,-0.2 -1,-0.2 0.890 115.9 46.5 -66.6 -41.2 29.5 11.5 7.6 10 10 A V H X S+ 0 0 60 -4,-2.4 4,-3.0 -5,-0.2 6,-0.3 0.931 110.0 52.9 -66.8 -42.5 31.5 12.4 10.7 11 11 A A H X>S+ 0 0 7 -4,-2.9 5,-1.9 -5,-0.3 4,-1.0 0.916 112.2 46.5 -58.7 -43.0 33.0 8.9 10.9 12 12 A K H <5S+ 0 0 184 -4,-2.2 3,-0.3 2,-0.2 -1,-0.2 0.938 115.5 44.3 -63.5 -48.0 34.1 9.2 7.3 13 13 A K H <5S+ 0 0 177 -4,-2.2 -2,-0.2 1,-0.2 -1,-0.2 0.882 119.9 40.4 -67.6 -39.4 35.6 12.7 7.6 14 14 A A H <5S- 0 0 74 -4,-3.0 -1,-0.2 -5,-0.2 -2,-0.2 0.519 104.7-124.9 -85.2 -11.3 37.3 12.0 10.9 15 15 A G T <5 + 0 0 73 -4,-1.0 2,-0.3 -3,-0.3 -3,-0.2 0.871 64.4 139.5 66.0 37.5 38.5 8.5 9.9 16 16 A A < - 0 0 40 -5,-1.9 -1,-0.2 -6,-0.3 2,-0.2 -0.784 61.0 -98.1-114.8 155.6 36.9 7.1 13.0 17 17 A K >> - 0 0 138 -2,-0.3 4,-2.1 1,-0.1 3,-0.6 -0.484 31.3-125.2 -70.9 142.3 34.9 3.9 13.6 18 18 A K H 3> S+ 0 0 123 1,-0.3 4,-3.0 2,-0.2 5,-0.2 0.881 110.7 56.6 -54.8 -40.3 31.1 4.5 13.5 19 19 A K H 3> S+ 0 0 125 1,-0.2 4,-2.0 2,-0.2 -1,-0.3 0.866 108.4 47.1 -61.6 -34.5 30.7 3.0 17.0 20 20 A D H <> S+ 0 0 68 -3,-0.6 4,-2.5 2,-0.2 -1,-0.2 0.887 111.7 49.2 -75.5 -38.2 33.2 5.5 18.4 21 21 A V H X S+ 0 0 15 -4,-2.1 4,-3.2 2,-0.2 5,-0.3 0.925 111.6 51.0 -63.8 -45.0 31.5 8.5 16.7 22 22 A K H X S+ 0 0 66 -4,-3.0 4,-2.6 -5,-0.2 5,-0.2 0.934 111.7 47.1 -57.4 -44.9 28.2 7.2 18.1 23 23 A L H X S+ 0 0 107 -4,-2.0 4,-2.2 -5,-0.2 -2,-0.2 0.946 116.3 43.0 -60.4 -49.8 29.6 7.0 21.6 24 24 A I H X S+ 0 0 101 -4,-2.5 4,-2.4 2,-0.2 -2,-0.2 0.926 115.5 47.6 -69.3 -43.9 31.2 10.4 21.5 25 25 A L H X S+ 0 0 29 -4,-3.2 4,-2.8 1,-0.2 -1,-0.2 0.939 113.8 48.4 -59.1 -49.3 28.2 12.1 19.9 26 26 A D H X S+ 0 0 56 -4,-2.6 4,-2.2 -5,-0.3 -1,-0.2 0.873 111.9 49.3 -60.4 -36.8 25.8 10.5 22.4 27 27 A T H X S+ 0 0 71 -4,-2.2 4,-2.4 -5,-0.2 -1,-0.2 0.866 110.0 51.3 -70.4 -38.2 28.1 11.5 25.3 28 28 A I H X S+ 0 0 85 -4,-2.4 4,-2.4 2,-0.2 5,-0.2 0.954 111.9 47.1 -61.2 -47.5 28.2 15.1 24.0 29 29 A L H X S+ 0 0 78 -4,-2.8 4,-2.5 1,-0.2 -2,-0.2 0.904 112.8 48.5 -62.8 -42.8 24.5 15.2 23.7 30 30 A E H X S+ 0 0 56 -4,-2.2 4,-3.0 -5,-0.2 5,-0.2 0.915 111.6 50.3 -62.5 -42.0 24.0 13.7 27.2 31 31 A T H X S+ 0 0 77 -4,-2.4 4,-2.3 2,-0.2 -2,-0.2 0.900 112.4 45.8 -65.1 -41.2 26.5 16.2 28.7 32 32 A I H X S+ 0 0 27 -4,-2.4 4,-2.6 2,-0.2 5,-0.2 0.939 114.3 49.0 -67.0 -44.8 24.8 19.2 27.1 33 33 A T H X S+ 0 0 92 -4,-2.5 4,-2.4 -5,-0.2 -2,-0.2 0.937 112.2 47.6 -60.0 -47.6 21.4 17.9 28.2 34 34 A E H X S+ 0 0 112 -4,-3.0 4,-1.2 1,-0.2 -1,-0.2 0.901 111.9 50.4 -61.2 -44.2 22.6 17.3 31.8 35 35 A A H <>S+ 0 0 11 -4,-2.3 5,-2.9 -5,-0.2 3,-0.3 0.905 111.0 48.4 -62.8 -40.7 24.2 20.8 31.9 36 36 A L H ><5S+ 0 0 26 -4,-2.6 3,-2.0 1,-0.2 -2,-0.2 0.899 107.4 55.9 -64.1 -41.7 21.0 22.4 30.7 37 37 A A H 3<5S+ 0 0 91 -4,-2.4 -1,-0.2 1,-0.3 -2,-0.2 0.782 107.1 50.4 -61.0 -28.1 19.0 20.5 33.3 38 38 A K T 3<5S- 0 0 151 -4,-1.2 -1,-0.3 -3,-0.3 -2,-0.2 0.286 122.4-109.7 -90.2 6.4 21.3 22.0 35.9 39 39 A G T < 5S+ 0 0 52 -3,-2.0 -3,-0.2 1,-0.2 -2,-0.1 0.613 70.6 143.6 76.2 13.3 20.6 25.5 34.5 40 40 A E < - 0 0 96 -5,-2.9 2,-0.4 -6,-0.2 12,-0.3 -0.363 48.9-122.3 -82.0 164.8 24.1 25.9 33.1 41 41 A K - 0 0 72 10,-0.1 2,-0.5 -2,-0.1 10,-0.2 -0.835 14.5-156.2-102.0 142.3 25.2 27.5 29.8 42 42 A I E -A 50 0A 30 8,-2.6 8,-3.0 -2,-0.4 2,-0.5 -0.956 15.5-175.7-120.5 106.2 27.1 25.6 27.2 43 43 A Q E -A 49 0A 143 -2,-0.5 2,-0.6 6,-0.3 6,-0.2 -0.918 6.5-169.9-109.9 119.8 29.0 28.0 25.0 44 44 A I E >> -A 48 0A 69 4,-3.1 3,-2.3 -2,-0.5 4,-1.2 -0.917 24.2-127.4-113.9 107.6 30.9 26.6 22.1 45 45 A V T 34 S+ 0 0 146 -2,-0.6 3,-0.0 1,-0.3 -2,-0.0 -0.169 94.2 16.5 -50.9 131.4 33.3 29.1 20.4 46 46 A G T 34 S+ 0 0 53 1,-0.1 -1,-0.3 17,-0.0 0, 0.0 0.472 130.2 48.2 83.5 0.5 32.6 29.2 16.7 47 47 A F T <4 S- 0 0 96 -3,-2.3 17,-2.8 1,-0.2 2,-0.3 0.484 101.9 -92.9-131.4 -71.2 29.2 27.6 16.9 48 48 A G E < -AB 44 63A 4 -4,-1.2 -4,-3.1 15,-0.3 2,-0.4 -0.982 30.9 -81.9 170.5-172.5 26.8 28.9 19.5 49 49 A S E -AB 43 62A 14 13,-2.3 13,-3.0 -2,-0.3 2,-0.4 -0.959 21.3-153.0-126.6 141.6 25.5 28.7 23.1 50 50 A F E +AB 42 61A 52 -8,-3.0 -8,-2.6 -2,-0.4 2,-0.3 -0.908 29.7 153.2-106.4 132.1 22.9 26.5 24.7 51 51 A E E - B 0 60A 80 9,-2.5 9,-2.7 -2,-0.4 2,-0.4 -0.983 41.3-115.4-154.4 159.4 21.0 27.8 27.7 52 52 A V E - B 0 59A 37 -2,-0.3 2,-0.3 -12,-0.3 5,-0.1 -0.851 34.2-177.1 -99.0 137.4 17.7 27.4 29.5 53 53 A R E B 0 58A 68 5,-2.9 5,-3.0 -2,-0.4 -14,-0.0 -0.887 360.0 360.0-129.6 162.0 15.4 30.5 29.6 54 54 A K 0 0 121 -2,-0.3 3,-0.3 3,-0.2 0, 0.0 -0.498 360.0 360.0 -71.6 360.0 12.0 31.2 31.2 55 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 56 74 A R 0 0 105 0, 0.0 2,-0.2 0, 0.0 -3,-0.1 0.000 360.0 360.0 360.0 -50.1 8.2 27.5 32.2 57 75 A K + 0 0 122 -3,-0.3 -3,-0.2 -5,-0.1 -5,-0.0 -0.505 360.0 179.8 -76.8 138.3 11.8 26.9 31.4 58 76 A V E -B 53 0A 76 -5,-3.0 -5,-2.9 -2,-0.2 2,-0.2 -0.989 30.0-110.1-139.5 149.5 12.8 26.0 27.9 59 77 A P E -B 52 0A 96 0, 0.0 2,-0.3 0, 0.0 -7,-0.2 -0.572 37.5-172.9 -76.2 144.7 16.1 25.2 26.1 60 78 A K E -B 51 0A 115 -9,-2.7 -9,-2.5 -2,-0.2 2,-0.5 -0.982 15.8-150.0-140.6 148.4 17.4 27.8 23.7 61 79 A F E -B 50 0A 71 -2,-0.3 -11,-0.2 -11,-0.2 -9,-0.0 -0.980 5.1-165.5-122.3 126.6 20.2 28.0 21.2 62 80 A K E -B 49 0A 52 -13,-3.0 -13,-2.3 -2,-0.5 -15,-0.1 -0.942 21.3-135.9-111.7 110.4 21.9 31.3 20.3 63 81 A P E -B 48 0A 48 0, 0.0 -15,-0.3 0, 0.0 -16,-0.0 -0.367 21.7-123.2 -65.4 141.0 24.1 30.9 17.2 64 82 A G > - 0 0 21 -17,-2.8 4,-2.5 -20,-0.2 5,-0.2 -0.183 27.0 -96.8 -76.3 174.9 27.5 32.5 17.3 65 83 A K H > S+ 0 0 79 1,-0.2 4,-1.7 2,-0.2 5,-0.2 0.931 120.5 50.4 -60.6 -52.9 28.8 35.2 15.0 66 84 A A H > S+ 0 0 60 1,-0.2 4,-1.9 2,-0.2 3,-0.2 0.922 114.0 45.1 -53.8 -47.8 30.8 32.8 12.7 67 85 A L H > S+ 0 0 48 -20,-0.2 4,-1.5 1,-0.2 -1,-0.2 0.901 109.7 55.0 -64.4 -41.9 27.7 30.5 12.2 68 86 A K H < S+ 0 0 130 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.830 112.7 44.5 -59.7 -30.1 25.4 33.5 11.6 69 87 A E H >< S+ 0 0 83 -4,-1.7 3,-0.5 -3,-0.2 -1,-0.2 0.800 105.7 59.5 -84.3 -32.1 27.7 34.6 8.9 70 88 A K H 3< S+ 0 0 151 -4,-1.9 -2,-0.2 1,-0.2 -1,-0.2 0.800 115.3 35.6 -68.5 -26.8 28.2 31.2 7.3 71 89 A V T 3< 0 0 117 -4,-1.5 -1,-0.2 1,-0.2 -2,-0.2 0.374 360.0 360.0-107.9 4.3 24.5 31.0 6.6 72 90 A K < 0 0 115 -3,-0.5 -1,-0.2 -4,-0.2 -2,-0.2 -0.206 360.0 360.0-163.8 360.0 23.8 34.6 5.8