==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-DEC-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN/RNA 27-JUN-11 2RS2 . COMPND 2 MOLECULE: RNA-BINDING PROTEIN MUSASHI HOMOLOG 1; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR T.OHYAMA,T.NAGATA,K.TSUDA,T.IMAI,H.OKANO,T.YAMAZAKI,M.KATAHI . 84 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6271.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 45 53.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 23.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 17.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 20 A C 0 0 86 0, 0.0 47,-0.1 0, 0.0 51,-0.1 0.000 360.0 360.0 360.0-165.4 9.2 -5.6 6.4 2 21 A K - 0 0 66 73,-0.1 74,-2.0 1,-0.1 2,-0.3 0.499 360.0-154.3 85.8 135.4 7.2 -2.9 4.5 3 22 A M E -AB 47 75A 1 44,-2.5 44,-2.7 72,-0.3 2,-0.3 -0.996 16.0-130.4-143.0 137.6 5.5 -3.2 1.0 4 23 A F E -AB 46 74A 53 70,-1.8 70,-2.4 -2,-0.3 2,-0.5 -0.692 24.3-151.6 -80.1 140.2 4.5 -1.1 -2.0 5 24 A I E +AB 45 73A 0 40,-2.9 40,-2.3 -2,-0.3 3,-0.3 -0.917 19.2 178.2-124.0 101.1 0.8 -1.8 -3.1 6 25 A G E + B 0 72A 5 66,-2.1 66,-2.4 -2,-0.5 38,-0.2 -0.409 53.3 42.7 -92.4 172.5 0.1 -1.2 -6.8 7 26 A G S S+ 0 0 37 36,-0.5 37,-0.2 64,-0.3 -1,-0.2 0.655 74.8 156.1 70.9 18.0 -3.1 -1.6 -9.0 8 27 A L - 0 0 9 35,-2.1 2,-0.2 -3,-0.3 -1,-0.2 -0.141 44.4-101.3 -66.4 167.0 -5.5 -0.1 -6.4 9 28 A S > - 0 0 15 57,-0.2 3,-1.6 60,-0.1 34,-0.2 -0.586 23.4-119.1 -82.8 153.5 -8.9 1.5 -7.1 10 29 A W T 3 S+ 0 0 176 1,-0.3 31,-0.2 -2,-0.2 -1,-0.1 0.644 120.2 54.9 -62.7 -12.9 -9.5 5.3 -7.3 11 30 A Q T 3 S+ 0 0 149 56,-0.1 -1,-0.3 29,-0.1 2,-0.2 0.466 84.7 114.1 -95.1 -7.5 -11.9 4.6 -4.4 12 31 A T < - 0 0 11 -3,-1.6 2,-0.3 54,-0.1 31,-0.1 -0.459 44.1-172.4 -71.4 138.1 -9.2 2.8 -2.2 13 32 A T > - 0 0 72 -2,-0.2 4,-1.9 1,-0.0 18,-0.1 -0.797 38.8-109.6-119.3 164.3 -8.2 4.4 1.1 14 33 A Q H > S+ 0 0 52 -2,-0.3 4,-2.1 2,-0.2 17,-0.1 0.785 123.4 54.8 -68.3 -24.0 -5.4 3.4 3.6 15 34 A E H > S+ 0 0 160 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.878 106.8 51.5 -71.2 -35.6 -8.1 2.2 6.0 16 35 A G H > S+ 0 0 16 2,-0.2 4,-1.4 1,-0.2 -2,-0.2 0.856 107.1 53.4 -67.7 -34.4 -9.3 0.0 3.1 17 36 A L H >X S+ 0 0 0 -4,-1.9 4,-3.1 2,-0.2 3,-0.7 0.966 109.3 47.5 -61.4 -51.1 -5.8 -1.3 2.8 18 37 A R H 3X S+ 0 0 121 -4,-2.1 4,-2.1 1,-0.2 -2,-0.2 0.878 107.5 57.9 -56.4 -38.3 -5.7 -2.2 6.5 19 38 A E H 3< S+ 0 0 166 -4,-2.1 -1,-0.2 1,-0.2 -2,-0.2 0.838 116.9 33.1 -60.9 -35.2 -9.2 -3.9 6.0 20 39 A Y H X< S+ 0 0 33 -4,-1.4 3,-0.9 -3,-0.7 -2,-0.2 0.839 120.0 48.9 -87.2 -39.5 -7.7 -6.2 3.3 21 40 A F H >X S+ 0 0 0 -4,-3.1 3,-1.7 1,-0.2 4,-1.1 0.706 90.2 79.2 -83.3 -15.4 -4.1 -6.6 4.7 22 41 A G T 3< S+ 0 0 48 -4,-2.1 -1,-0.2 -5,-0.3 -2,-0.1 0.588 81.3 71.6 -63.9 -10.9 -5.4 -7.5 8.3 23 42 A Q T <4 S+ 0 0 136 -3,-0.9 -1,-0.3 1,-0.1 -2,-0.2 0.725 104.0 37.9 -73.0 -25.3 -6.0 -11.0 6.9 24 43 A F T <4 S- 0 0 17 -3,-1.7 2,-0.2 1,-0.4 -2,-0.2 0.680 132.4 -45.5-102.4 -24.1 -2.2 -11.7 6.7 25 44 A G S < S- 0 0 26 -4,-1.1 -1,-0.4 29,-0.1 2,-0.3 -0.901 72.1 -60.6 168.4 167.8 -1.2 -9.9 10.0 26 45 A E - 0 0 131 -2,-0.2 24,-2.8 -3,-0.1 2,-0.3 -0.548 56.3-128.0 -68.3 127.5 -1.6 -6.7 12.1 27 46 A V E -C 49 0A 3 -2,-0.3 22,-0.3 22,-0.2 3,-0.1 -0.648 18.0-165.8 -85.2 133.6 -0.4 -3.6 10.1 28 47 A K E S- 0 0 143 20,-2.0 2,-0.3 -2,-0.3 21,-0.2 0.679 78.4 -0.3 -83.4 -24.6 2.2 -1.3 11.7 29 48 A E E -C 48 0A 85 19,-1.4 19,-2.7 2,-0.0 -1,-0.3 -0.960 60.3-169.2-164.1 148.4 1.5 1.5 9.0 30 49 A C E +C 47 0A 25 -2,-0.3 2,-0.3 17,-0.2 17,-0.2 -0.988 10.7 175.8-145.8 145.5 -0.7 2.0 5.9 31 50 A L E -C 46 0A 53 15,-2.6 15,-2.2 -2,-0.3 2,-0.4 -0.994 19.2-161.5-148.3 147.3 -0.6 4.8 3.2 32 51 A V E -C 45 0A 4 -2,-0.3 2,-1.7 13,-0.3 13,-0.3 -0.992 22.0-139.6-132.5 126.2 -2.3 5.8 -0.1 33 52 A M + 0 0 74 11,-1.6 12,-0.1 -2,-0.4 2,-0.1 -0.328 42.6 166.9 -86.0 52.8 -0.5 8.3 -2.3 34 53 A R - 0 0 132 -2,-1.7 7,-0.3 1,-0.1 6,-0.1 -0.332 42.0-111.8 -73.1 148.7 -3.7 10.3 -3.2 35 54 A D > - 0 0 64 5,-2.6 4,-1.6 1,-0.1 -1,-0.1 -0.659 22.2-145.1 -74.7 129.7 -3.9 13.7 -4.9 36 55 A P T 4 S+ 0 0 98 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.617 94.1 45.7 -80.9 -10.9 -5.3 16.3 -2.4 37 56 A L T 4 S+ 0 0 143 3,-0.1 -3,-0.0 1,-0.0 -2,-0.0 0.870 127.6 23.4 -91.5 -45.3 -7.3 18.3 -5.0 38 57 A T T 4 S- 0 0 85 2,-0.1 3,-0.1 0, 0.0 -1,-0.0 0.522 92.1-135.0-102.6 -11.6 -9.0 15.5 -7.0 39 58 A K < + 0 0 143 -4,-1.6 2,-0.1 1,-0.2 -5,-0.1 0.371 50.2 152.9 65.7 3.3 -8.9 12.7 -4.3 40 59 A R - 0 0 119 1,-0.1 -5,-2.6 -6,-0.1 -1,-0.2 -0.394 45.2-142.3 -56.8 129.0 -7.6 10.2 -7.0 41 60 A S > - 0 0 2 -7,-0.3 3,-1.4 -31,-0.2 -8,-0.3 0.451 27.0-127.0 -72.0 -6.3 -5.5 7.5 -5.2 42 61 A R T 3 - 0 0 178 1,-0.2 -35,-0.2 -10,-0.1 -32,-0.1 0.460 54.6 -85.7 61.3 4.8 -3.0 7.4 -8.2 43 62 A G T 3 S+ 0 0 14 -34,-0.2 -35,-2.1 1,-0.2 -36,-0.5 0.654 104.4 77.1 74.2 19.1 -3.8 3.6 -8.1 44 63 A F < + 0 0 29 -3,-1.4 -11,-1.6 -37,-0.2 -38,-0.2 -0.996 41.1 150.6-156.8 160.9 -1.1 2.9 -5.4 45 64 A G E -AC 5 32A 0 -40,-2.3 -40,-2.9 -2,-0.3 2,-0.3 -0.784 32.9-101.6-158.7-157.0 -0.0 3.0 -1.7 46 65 A F E -AC 4 31A 49 -15,-2.2 -15,-2.6 -42,-0.3 2,-0.3 -0.987 19.5-168.7-146.1 150.5 2.1 1.3 1.0 47 66 A V E -AC 3 30A 0 -44,-2.7 -44,-2.5 -2,-0.3 2,-0.4 -0.995 3.6-163.3-143.3 139.9 1.6 -1.1 4.0 48 67 A T E - C 0 29A 13 -19,-2.7 -20,-2.0 -2,-0.3 -19,-1.4 -0.964 13.8-144.3-119.8 139.7 4.0 -2.2 6.9 49 68 A F E - C 0 27A 3 -2,-0.4 -22,-0.2 -22,-0.3 3,-0.1 -0.723 22.4-123.7-101.1 153.6 3.4 -5.3 9.1 50 69 A M S S+ 0 0 108 -24,-2.8 2,-0.3 -2,-0.3 -23,-0.1 0.623 101.3 17.6 -65.6 -13.8 4.1 -5.8 12.8 51 70 A D S >> S- 0 0 109 -25,-0.3 3,-1.5 1,-0.0 4,-0.6 -0.983 79.2-115.2-154.5 154.3 6.2 -8.8 11.7 52 71 A Q H 3> S+ 0 0 94 -2,-0.3 4,-2.6 1,-0.3 3,-0.5 0.765 104.1 80.5 -59.6 -26.0 7.8 -10.2 8.5 53 72 A A H 3> S+ 0 0 52 1,-0.2 4,-1.0 2,-0.2 -1,-0.3 0.730 92.1 49.9 -58.6 -23.8 5.4 -13.2 8.7 54 73 A G H <> S+ 0 0 4 -3,-1.5 4,-1.4 2,-0.2 -1,-0.2 0.839 109.2 50.6 -81.6 -33.0 2.7 -11.0 7.1 55 74 A V H X S+ 0 0 2 -4,-0.6 4,-1.7 -3,-0.5 3,-0.3 0.952 106.7 56.3 -64.1 -47.4 5.0 -9.9 4.3 56 75 A D H X S+ 0 0 105 -4,-2.6 4,-2.2 1,-0.2 -2,-0.2 0.882 107.0 48.5 -51.7 -45.5 5.9 -13.5 3.6 57 76 A K H X S+ 0 0 103 -4,-1.0 4,-1.4 1,-0.2 -1,-0.2 0.877 107.9 53.6 -65.5 -39.1 2.2 -14.4 3.0 58 77 A V H < S+ 0 0 3 -4,-1.4 -1,-0.2 -3,-0.3 -2,-0.2 0.824 114.3 42.5 -70.0 -29.4 1.5 -11.5 0.7 59 78 A L H < S+ 0 0 84 -4,-1.7 -2,-0.2 -3,-0.2 -1,-0.2 0.857 111.1 55.3 -78.8 -38.6 4.4 -12.6 -1.6 60 79 A A H < S+ 0 0 80 -4,-2.2 2,-0.3 -5,-0.2 -2,-0.2 0.729 92.3 83.3 -70.2 -25.1 3.5 -16.3 -1.4 61 80 A Q S < S- 0 0 91 -4,-1.4 3,-0.1 -5,-0.1 0, 0.0 -0.613 73.9-142.8 -83.1 140.0 -0.1 -15.8 -2.7 62 81 A S S S+ 0 0 132 -2,-0.3 2,-0.3 1,-0.1 -1,-0.1 0.642 75.3 16.5 -83.7 -14.6 -0.4 -15.6 -6.5 63 82 A R - 0 0 127 2,-0.0 2,-0.3 9,-0.0 -1,-0.1 -0.989 56.1-167.6-159.0 148.1 -3.2 -12.8 -6.7 64 83 A H E -D 71 0B 7 7,-0.6 7,-1.8 -2,-0.3 2,-0.3 -0.961 6.4-170.0-138.3 154.3 -4.9 -10.1 -4.6 65 84 A E E +D 70 0B 83 -2,-0.3 2,-0.3 5,-0.3 5,-0.2 -0.985 9.0 172.1-153.9 132.4 -8.1 -7.9 -5.2 66 85 A L E > S+D 69 0B 32 3,-2.1 3,-1.1 -2,-0.3 -57,-0.2 -0.984 77.0 2.2-148.7 127.4 -9.6 -4.9 -3.4 67 86 A D T 3 S- 0 0 73 -2,-0.3 -56,-0.1 1,-0.2 3,-0.1 0.840 129.6 -62.0 57.9 38.0 -12.7 -2.8 -4.7 68 87 A S T 3 S+ 0 0 108 1,-0.2 2,-0.4 -59,-0.1 -1,-0.2 0.612 113.9 116.4 67.0 17.2 -13.0 -5.3 -7.6 69 88 A K E < S-D 66 0B 124 -3,-1.1 -3,-2.1 -60,-0.0 2,-0.5 -0.951 71.8-117.9-117.1 131.7 -9.5 -4.3 -8.9 70 89 A T E -D 65 0B 82 -2,-0.4 -5,-0.3 -5,-0.2 2,-0.2 -0.584 36.0-152.9 -67.7 117.1 -6.5 -6.7 -9.2 71 90 A I E -D 64 0B 7 -7,-1.8 -7,-0.6 -2,-0.5 -64,-0.3 -0.618 10.2-147.8 -98.1 157.4 -3.8 -5.3 -6.8 72 91 A D E -B 6 0A 90 -66,-2.4 -66,-2.1 -2,-0.2 2,-0.3 -0.768 20.1-178.9-129.1 78.8 0.0 -5.8 -7.2 73 92 A P E +B 5 0A 17 0, 0.0 2,-0.3 0, 0.0 -68,-0.2 -0.646 12.0 155.6 -87.8 142.5 1.8 -5.8 -3.7 74 93 A K E -B 4 0A 82 -70,-2.4 -70,-1.8 -2,-0.3 -2,-0.0 -0.953 48.5 -62.9-158.3 164.2 5.6 -6.2 -3.5 75 94 A V E -B 3 0A 85 -2,-0.3 2,-0.3 -72,-0.2 -72,-0.3 -0.336 58.0-118.2 -62.6 134.2 8.7 -5.5 -1.2 76 95 A A - 0 0 17 -74,-2.0 -1,-0.1 -29,-0.1 3,-0.1 -0.567 18.7-115.6 -79.3 135.3 9.2 -1.7 -0.7 77 96 A F - 0 0 187 -2,-0.3 -1,-0.1 1,-0.1 2,-0.0 -0.476 51.5 -92.0 -61.7 136.3 12.4 0.2 -1.8 78 97 A P + 0 0 119 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.263 56.5 158.9 -69.4 139.1 14.2 1.4 1.4 79 98 A R - 0 0 198 -3,-0.1 2,-0.5 -2,-0.0 -3,-0.0 -0.909 35.9-115.6-148.4 167.3 13.5 5.0 2.8 80 99 A R - 0 0 185 -2,-0.3 2,-0.1 0, 0.0 0, 0.0 -0.957 24.8-131.5-118.7 117.6 13.8 7.0 6.1 81 100 A A - 0 0 91 -2,-0.5 0, 0.0 1,-0.1 0, 0.0 -0.351 23.4-133.7 -65.3 144.2 10.7 8.3 8.0 82 101 A Q - 0 0 157 -2,-0.1 2,-0.1 1,-0.0 -1,-0.1 -0.859 13.6-122.0-109.8 134.9 10.9 12.0 9.0 83 102 A P 0 0 118 0, 0.0 -1,-0.0 0, 0.0 0, 0.0 -0.431 360.0 360.0 -77.2 150.3 10.0 13.4 12.5 84 103 A K 0 0 270 -2,-0.1 0, 0.0 0, 0.0 0, 0.0 0.276 360.0 360.0-160.7 360.0 7.3 16.1 13.0