==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-NOV-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSLATION/RNA 02-MAR-04 1SJ4 . COMPND 2 MOLECULE: PRECURSOR FORM OF THE HEPATITIS DELTA VIRUS RIBOZ . SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS DELTA VIRUS; . AUTHOR A.KE,K.ZHOU,F.DING,J.H.CATE,J.A.DOUDNA . 95 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5909.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 63.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 20.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 8.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 9.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 24.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 4 P P 0 0 180 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 107.9 41.3 29.2 77.7 2 5 P E - 0 0 85 1,-0.1 2,-0.3 80,-0.0 80,-0.0 0.091 360.0-109.7 -54.8 172.7 40.1 30.0 81.2 3 6 P T - 0 0 35 1,-0.0 -1,-0.1 80,-0.0 3,-0.1 -0.804 22.8-115.6-111.5 152.0 42.5 31.4 83.9 4 7 P R - 0 0 184 -2,-0.3 -1,-0.0 81,-0.2 0, 0.0 -0.458 51.4 -74.5 -81.1 154.7 43.8 29.8 87.0 5 8 P P - 0 0 74 0, 0.0 2,-0.3 0, 0.0 -1,-0.2 -0.114 59.2-176.8 -48.3 142.4 42.9 31.2 90.5 6 9 P N - 0 0 8 53,-0.2 57,-0.1 -3,-0.1 50,-0.1 -0.957 42.2-123.8-144.8 160.8 44.7 34.4 91.4 7 10 P H S S+ 0 0 40 -2,-0.3 49,-2.3 55,-0.1 2,-0.4 0.766 102.1 59.9 -69.0 -30.1 45.1 36.9 94.3 8 11 P T E S-A 55 0A 0 47,-0.2 76,-2.8 76,-0.1 2,-0.3 -0.877 74.1-151.4-106.6 130.1 43.9 39.6 91.8 9 12 P I E -AB 54 83A 0 45,-2.4 45,-2.1 -2,-0.4 2,-0.6 -0.770 10.8-142.0 -99.6 146.9 40.6 39.6 90.0 10 13 P Y E -AB 53 82A 47 72,-3.0 72,-2.0 -2,-0.3 2,-0.4 -0.959 19.4-170.5-110.8 119.9 40.3 41.3 86.7 11 14 P I E +AB 52 81A 0 41,-2.8 41,-2.3 -2,-0.6 2,-0.3 -0.891 11.6 163.2-110.5 139.6 37.1 43.1 86.2 12 15 P N E + B 0 80A 31 68,-2.5 68,-2.1 -2,-0.4 39,-0.2 -0.832 46.2 67.3-144.0-175.1 35.9 44.5 82.8 13 16 P N S S+ 0 0 45 -2,-0.3 2,-0.2 1,-0.2 38,-0.2 0.820 72.7 157.5 67.0 30.7 32.8 45.8 81.1 14 17 P L - 0 0 3 36,-2.4 2,-0.4 -3,-0.1 -1,-0.2 -0.546 56.4 -89.4 -86.4 154.0 32.9 48.7 83.6 15 18 P N > - 0 0 38 59,-0.3 3,-0.9 -2,-0.2 35,-0.2 -0.475 36.9-159.6 -63.6 119.2 31.2 52.1 83.0 16 19 P E T 3 S+ 0 0 97 -2,-0.4 -1,-0.2 1,-0.2 34,-0.1 0.587 81.2 73.2 -78.6 -9.8 34.0 54.1 81.2 17 20 P K T 3 S+ 0 0 76 2,-0.1 2,-0.5 33,-0.0 -1,-0.2 0.422 76.4 101.0 -85.1 4.6 32.4 57.5 82.0 18 21 P I S < S- 0 0 23 -3,-0.9 32,-0.1 1,-0.1 5,-0.1 -0.773 77.2-118.3 -94.8 124.6 33.5 57.1 85.7 19 22 P K > - 0 0 136 -2,-0.5 4,-2.6 1,-0.1 3,-0.3 -0.214 25.1-114.4 -59.6 146.8 36.6 59.0 86.9 20 23 P K H > S+ 0 0 104 1,-0.2 4,-2.0 2,-0.2 5,-0.2 0.830 112.1 51.0 -47.0 -46.7 39.5 57.0 88.2 21 24 P D H > S+ 0 0 105 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.922 113.1 45.2 -64.5 -42.5 39.3 58.2 91.8 22 25 P E H > S+ 0 0 87 -3,-0.3 4,-3.2 2,-0.2 5,-0.3 0.923 109.4 54.0 -70.1 -42.4 35.6 57.5 92.1 23 26 P L H X S+ 0 0 9 -4,-2.6 4,-3.2 1,-0.2 5,-0.3 0.954 109.5 48.2 -56.9 -50.2 35.7 54.0 90.4 24 27 P K H X S+ 0 0 71 -4,-2.0 4,-1.7 -5,-0.2 -1,-0.2 0.907 113.8 49.8 -56.8 -40.8 38.4 52.8 92.9 25 28 P K H X S+ 0 0 130 -4,-1.7 4,-1.9 -5,-0.2 3,-0.3 0.977 114.4 40.9 -62.5 -57.7 36.3 54.2 95.7 26 29 P S H X S+ 0 0 31 -4,-3.2 4,-1.4 1,-0.2 -2,-0.2 0.870 113.2 55.1 -60.2 -36.9 33.0 52.6 94.7 27 30 P L H X S+ 0 0 0 -4,-3.2 4,-1.7 -5,-0.3 -1,-0.2 0.867 109.4 46.9 -65.4 -34.4 34.8 49.3 93.8 28 31 P H H X S+ 0 0 88 -4,-1.7 4,-1.9 -5,-0.3 -1,-0.2 0.848 103.7 64.2 -72.7 -34.2 36.2 49.2 97.3 29 32 P A H < S+ 0 0 77 -4,-1.9 -2,-0.2 1,-0.2 -1,-0.2 0.878 116.4 27.5 -55.5 -40.4 32.8 50.0 98.7 30 33 P I H < S+ 0 0 39 -4,-1.4 -1,-0.2 1,-0.1 -2,-0.2 0.635 123.6 47.2 -99.8 -17.3 31.5 46.7 97.3 31 34 P F H >< S+ 0 0 0 -4,-1.7 3,-1.3 -5,-0.2 4,-0.2 0.571 87.7 81.2-103.3 -8.0 34.6 44.5 97.3 32 35 P S G >< S+ 0 0 58 -4,-1.9 3,-1.1 1,-0.3 -1,-0.1 0.721 80.8 68.8 -69.5 -21.3 36.0 45.1 100.7 33 36 P R G 3 S+ 0 0 174 1,-0.2 -1,-0.3 -5,-0.2 3,-0.1 0.518 90.0 63.9 -74.8 -6.3 33.6 42.6 102.4 34 37 P F G < S- 0 0 18 -3,-1.3 2,-0.2 1,-0.4 -1,-0.2 0.516 121.4 -67.3 -94.9 -6.4 35.4 39.7 100.6 35 38 P G S < S- 0 0 25 -3,-1.1 -1,-0.4 -4,-0.2 0, 0.0 -0.784 77.2 -30.6 141.9 174.3 38.7 40.2 102.4 36 39 P Q - 0 0 114 -2,-0.2 21,-2.1 -3,-0.1 2,-0.5 -0.289 53.0-147.3 -59.9 138.5 41.6 42.7 102.7 37 40 P I E -C 56 0A 22 19,-0.2 19,-0.3 1,-0.2 3,-0.1 -0.937 13.0-170.3-111.1 125.5 42.3 44.6 99.5 38 41 P L E - 0 0 59 17,-3.3 2,-0.3 -2,-0.5 18,-0.2 0.876 69.4 -32.7 -80.4 -35.8 45.9 45.5 98.9 39 42 P D E -C 55 0A 64 16,-1.2 16,-3.2 2,-0.0 2,-0.5 -0.975 44.0-135.0-175.4 160.4 45.1 47.8 96.0 40 43 P I E -C 54 0A 5 -2,-0.3 2,-0.5 14,-0.2 14,-0.2 -0.990 24.4-155.8-129.0 118.6 42.8 48.5 93.1 41 44 P L E +C 53 0A 68 12,-2.4 12,-2.3 -2,-0.5 2,-0.3 -0.862 18.6 167.6-102.3 133.3 44.4 49.5 89.9 42 45 P V + 0 0 12 -2,-0.5 2,-0.4 10,-0.2 10,-0.1 -0.997 10.4 180.0-145.4 135.8 42.6 51.5 87.3 43 46 P S - 0 0 46 8,-0.5 8,-0.4 5,-0.4 7,-0.1 -0.990 19.9-154.8-134.3 144.4 43.6 53.4 84.2 44 47 P R + 0 0 111 -2,-0.4 5,-0.1 5,-0.1 -1,-0.0 0.225 52.5 128.1-103.5 15.7 41.5 55.3 81.8 45 48 P S S > S- 0 0 58 1,-0.1 4,-2.2 3,-0.0 -2,-0.1 -0.129 77.5 -98.5 -66.5 165.3 43.8 55.0 78.8 46 49 P L T 4 S+ 0 0 147 1,-0.2 -1,-0.1 2,-0.2 -3,-0.0 0.850 123.5 39.1 -52.9 -38.3 42.5 53.7 75.4 47 50 P K T 4 S+ 0 0 167 1,-0.1 -1,-0.2 3,-0.0 -3,-0.0 0.823 123.4 36.9 -83.7 -34.7 43.8 50.1 76.2 48 51 P M T >4 S+ 0 0 50 2,-0.0 3,-1.3 3,-0.0 -5,-0.4 0.550 83.3 116.5 -98.6 -8.6 42.9 49.9 79.9 49 52 P R T 3< S+ 0 0 91 -4,-2.2 -5,-0.1 1,-0.2 -33,-0.1 -0.143 74.2 28.6 -59.8 157.3 39.6 51.7 80.3 50 53 P G T 3 S+ 0 0 9 1,-0.2 -36,-2.4 -35,-0.2 2,-0.3 0.412 108.5 91.4 74.0 -2.2 36.5 49.8 81.4 51 54 P Q < - 0 0 35 -3,-1.3 -8,-0.5 -8,-0.4 2,-0.3 -0.814 50.2-177.3-123.3 159.6 38.8 47.4 83.3 52 55 P A E -A 11 0A 0 -41,-2.3 -41,-2.8 -2,-0.3 2,-0.6 -0.987 20.6-140.5-152.9 154.5 40.1 47.2 86.8 53 56 P F E -AC 10 41A 61 -12,-2.3 -12,-2.4 -2,-0.3 2,-0.6 -0.953 15.6-164.6-118.8 109.0 42.4 44.9 88.8 54 57 P V E -AC 9 40A 0 -45,-2.1 -45,-2.4 -2,-0.6 2,-0.8 -0.841 10.3-154.1 -93.5 124.2 41.3 44.3 92.3 55 58 P I E -AC 8 39A 0 -16,-3.2 -17,-3.3 -2,-0.6 -16,-1.2 -0.834 10.2-168.0-105.4 106.8 44.1 42.9 94.4 56 59 P F E - C 0 37A 0 -49,-2.3 -19,-0.2 -2,-0.8 3,-0.1 -0.553 24.4-135.3 -88.5 151.2 43.1 40.8 97.3 57 60 P K S S+ 0 0 91 -21,-2.1 2,-0.5 -2,-0.2 -1,-0.1 0.923 93.3 38.8 -70.4 -42.2 45.5 39.6 100.1 58 61 P E S >> S- 0 0 118 -22,-0.4 3,-1.5 1,-0.1 4,-1.3 -0.936 76.5-135.2-116.7 131.3 44.2 36.0 100.1 59 62 P V H 3> S+ 0 0 48 -2,-0.5 4,-2.9 1,-0.3 -53,-0.2 0.764 103.6 64.5 -48.5 -33.5 43.1 34.0 97.0 60 63 P S H 3> S+ 0 0 65 2,-0.2 4,-3.3 1,-0.2 -1,-0.3 0.901 101.1 51.3 -61.2 -38.4 40.0 32.8 98.7 61 64 P S H <> S+ 0 0 13 -3,-1.5 4,-3.2 2,-0.2 5,-0.3 0.964 109.9 48.2 -62.2 -52.5 38.7 36.4 98.9 62 65 P A H X S+ 0 0 0 -4,-1.3 4,-3.2 1,-0.2 -2,-0.2 0.964 114.2 48.3 -51.2 -53.7 39.4 36.9 95.1 63 66 P T H X S+ 0 0 20 -4,-2.9 4,-2.5 2,-0.2 5,-0.2 0.903 112.6 46.5 -52.0 -51.7 37.6 33.6 94.5 64 67 P N H X S+ 0 0 85 -4,-3.3 4,-3.4 2,-0.2 5,-0.3 0.966 113.6 49.4 -56.6 -52.2 34.6 34.5 96.7 65 68 P A H X S+ 0 0 0 -4,-3.2 4,-2.7 1,-0.2 -2,-0.2 0.914 109.9 52.1 -52.1 -48.9 34.4 38.0 95.1 66 69 P L H X S+ 0 0 23 -4,-3.2 4,-0.6 -5,-0.3 -1,-0.2 0.930 115.8 38.8 -56.9 -48.6 34.5 36.4 91.6 67 70 P R H < S+ 0 0 197 -4,-2.5 3,-0.3 1,-0.2 -2,-0.2 0.899 120.7 44.6 -70.1 -42.0 31.7 33.9 92.3 68 71 P S H < S+ 0 0 62 -4,-3.4 -2,-0.2 -5,-0.2 -3,-0.2 0.802 119.2 36.8 -74.7 -31.5 29.6 36.4 94.3 69 72 P M H >< S+ 0 0 7 -4,-2.7 3,-2.0 -5,-0.3 -1,-0.2 0.313 75.9 130.3-107.7 8.3 29.8 39.5 92.2 70 73 P Q T 3< S+ 0 0 95 -4,-0.6 10,-0.2 -3,-0.3 9,-0.1 -0.431 85.4 7.6 -62.7 130.9 29.8 38.1 88.6 71 74 P G T 3 S+ 0 0 37 8,-2.7 -1,-0.3 1,-0.2 9,-0.1 0.565 88.8 160.6 75.4 8.2 27.2 40.1 86.6 72 75 P F < - 0 0 81 -3,-2.0 7,-2.4 7,-0.3 2,-0.4 -0.461 45.6-117.8 -68.9 126.1 26.6 42.6 89.4 73 76 P P E +D 78 0B 89 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 -0.505 44.7 167.8 -65.8 119.5 24.9 45.8 88.1 74 77 P F E > -D 77 0B 20 3,-2.7 3,-1.8 -2,-0.4 -59,-0.3 -0.986 68.5 -9.7-139.6 123.2 27.4 48.6 88.8 75 78 P Y T 3 S- 0 0 52 -2,-0.4 -1,-0.2 1,-0.3 -57,-0.1 0.965 131.9 -56.0 50.3 50.3 27.1 52.1 87.3 76 79 P D T 3 S+ 0 0 158 1,-0.1 -1,-0.3 -3,-0.1 -62,-0.0 0.526 121.1 97.0 60.7 9.7 24.3 50.6 85.1 77 80 P K E < S-D 74 0B 64 -3,-1.8 -3,-2.7 -5,-0.1 2,-0.6 -0.981 78.8-111.8-130.8 144.7 26.4 47.8 83.6 78 81 P P E -D 73 0B 76 0, 0.0 -6,-0.2 0, 0.0 2,-0.2 -0.617 36.5-130.2 -75.7 117.0 26.9 44.2 84.5 79 82 P M - 0 0 1 -7,-2.4 -8,-2.7 -2,-0.6 2,-0.6 -0.430 15.9-151.9 -66.4 130.0 30.4 43.7 85.9 80 83 P R E -B 12 0A 117 -68,-2.1 -68,-2.5 -10,-0.2 2,-0.3 -0.945 16.4-167.2-110.0 119.4 32.3 40.8 84.3 81 84 P I E +B 11 0A 4 -2,-0.6 2,-0.3 -70,-0.2 -70,-0.2 -0.819 16.4 157.4-112.2 148.3 34.9 39.3 86.6 82 85 P Q E -B 10 0A 84 -72,-2.0 -72,-3.0 -2,-0.3 2,-0.2 -0.876 46.1 -90.7-149.2 174.1 37.8 36.8 86.0 83 86 P Y E -B 9 0A 33 -74,-0.3 2,-0.3 -2,-0.3 -74,-0.2 -0.600 52.8 -97.6 -87.8 155.9 41.0 36.0 87.7 84 87 P A - 0 0 3 -76,-2.8 -76,-0.1 -2,-0.2 -80,-0.1 -0.591 25.8-126.9 -75.9 136.4 44.0 38.0 86.6 85 88 P K S S+ 0 0 186 -2,-0.3 2,-0.3 -82,-0.1 -81,-0.2 0.786 90.1 8.6 -50.9 -32.7 46.2 36.1 84.0 86 89 P T S S- 0 0 102 -83,-0.1 -78,-0.1 -78,-0.0 -1,-0.0 -0.952 94.2 -78.1-146.3 166.2 49.2 36.7 86.2 87 90 P D - 0 0 75 -2,-0.3 2,-0.2 1,-0.1 -2,-0.0 -0.260 43.9-120.0 -66.3 151.6 50.2 37.9 89.6 88 91 P S >> - 0 0 15 1,-0.1 4,-1.4 -4,-0.0 3,-1.0 -0.577 28.4-110.9 -85.4 157.2 50.3 41.7 90.3 89 92 P D H 3> S+ 0 0 115 1,-0.3 4,-2.9 2,-0.2 5,-0.2 0.860 116.6 62.3 -57.3 -39.0 53.7 43.1 91.4 90 93 P I H 34 S+ 0 0 59 1,-0.2 -1,-0.3 2,-0.2 -3,-0.0 0.840 106.8 46.6 -55.2 -35.4 52.4 43.8 94.9 91 94 P I H X> S+ 0 0 5 -3,-1.0 3,-0.9 1,-0.2 4,-0.7 0.820 110.5 51.9 -77.2 -33.8 51.8 40.1 95.2 92 95 P A H 3< S+ 0 0 62 -4,-1.4 -2,-0.2 1,-0.2 -1,-0.2 0.918 95.7 66.9 -69.1 -44.4 55.2 39.1 93.8 93 96 P K T 3< S+ 0 0 172 -4,-2.9 -1,-0.2 2,-0.2 -2,-0.1 0.484 121.4 20.1 -57.5 1.8 57.1 41.4 96.2 94 97 P M T <4 0 0 138 -3,-0.9 -2,-0.2 -5,-0.2 -3,-0.1 0.331 360.0 360.0-128.8 -96.1 55.8 39.0 98.8 95 98 P K < 0 0 100 -4,-0.7 -2,-0.2 0, 0.0 -3,-0.1 -0.498 360.0 360.0 -82.8 360.0 54.7 35.4 97.9