==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-NOV-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN TRANSPORT 02-AUG-11 3T97 . COMPND 2 MOLECULE: NUCLEAR PORE COMPLEX PROTEIN NUP54; . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; . AUTHOR R.CHAUHAN,G.BLOBEL,I.MELCAK . 168 3 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 11399.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 158 94.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 0.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 143 85.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 345 B H 0 0 171 0, 0.0 3,-0.2 0, 0.0 115,-0.0 0.000 360.0 360.0 360.0 106.8 26.5 34.0 32.9 2 346 B M > + 0 0 60 1,-0.1 4,-1.2 2,-0.1 3,-0.3 0.050 360.0 122.4-118.7 20.2 26.8 35.4 36.4 3 347 B T H > S+ 0 0 8 1,-0.2 4,-0.8 2,-0.2 -1,-0.1 0.726 76.5 49.9 -56.4 -24.1 28.4 32.3 38.0 4 348 B K H > S+ 0 0 160 2,-0.2 4,-1.3 1,-0.2 -1,-0.2 0.856 109.0 47.2 -85.5 -38.0 31.4 34.4 39.1 5 349 B Q H > S+ 0 0 124 -3,-0.3 4,-1.4 1,-0.2 -2,-0.2 0.582 107.8 59.9 -79.3 -10.2 29.5 37.3 40.7 6 350 B H H X S+ 0 0 11 -4,-1.2 4,-2.0 2,-0.2 -1,-0.2 0.851 105.8 46.6 -81.3 -38.5 27.4 34.7 42.5 7 351 B Q H X S+ 0 0 69 -4,-0.8 4,-1.1 2,-0.2 -2,-0.2 0.815 111.1 51.9 -72.3 -31.2 30.4 33.2 44.2 8 352 B T H >X S+ 0 0 70 -4,-1.3 4,-2.1 2,-0.2 3,-0.6 0.943 111.3 47.4 -66.4 -49.0 31.7 36.7 45.1 9 353 B R H 3X S+ 0 0 102 -4,-1.4 4,-2.8 1,-0.2 -2,-0.2 0.867 108.4 55.0 -60.1 -39.0 28.3 37.5 46.7 10 354 B L H 3X S+ 0 0 0 -4,-2.0 4,-2.0 2,-0.2 -1,-0.2 0.775 107.0 50.8 -67.0 -26.6 28.4 34.1 48.5 11 355 B D H X S+ 0 0 74 -4,-2.2 4,-2.1 2,-0.2 3,-0.7 0.987 116.2 41.3 -73.0 -66.5 12.8 43.2 104.7 51 395 B K H 3X S+ 0 0 82 -4,-3.1 4,-1.2 1,-0.3 -3,-0.2 0.896 117.5 53.2 -48.1 -41.3 14.7 45.4 107.2 52 396 B Q H 3X S+ 0 0 51 -4,-2.4 4,-0.7 -5,-0.4 -1,-0.3 0.851 109.1 46.1 -64.4 -37.8 12.1 48.1 106.2 53 397 B E H > 0 0 184 0, 0.0 3,-1.3 0, 0.0 4,-0.9 0.000 360.0 360.0 360.0 -14.3 30.0 25.6 33.5 61 365 C D T 34 - 0 0 139 1,-0.3 0, 0.0 2,-0.2 0, 0.0 0.545 360.0 -95.3 54.1 7.5 33.3 25.0 35.5 62 366 C R T >> S+ 0 0 161 1,-0.1 4,-1.3 3,-0.1 3,-1.0 0.548 102.1 119.0 52.4 10.4 31.5 23.0 38.2 63 367 C T H <> + 0 0 23 -3,-1.3 4,-2.1 1,-0.3 5,-0.2 0.764 65.0 65.4 -74.1 -20.9 31.4 26.3 39.9 64 368 C L H 3X S+ 0 0 28 -4,-0.9 4,-1.9 1,-0.2 -1,-0.3 0.794 98.4 53.1 -68.5 -28.0 27.7 25.9 39.7 65 369 C I H <> S+ 0 0 67 -3,-1.0 4,-1.7 2,-0.2 -2,-0.2 0.897 108.6 47.6 -73.2 -42.8 28.1 22.9 42.1 66 370 C E H X S+ 0 0 97 -4,-1.3 4,-3.6 2,-0.2 -2,-0.2 0.910 114.1 46.8 -64.3 -45.1 30.1 24.9 44.7 67 371 C N H X S+ 0 0 2 -4,-2.1 4,-3.0 2,-0.2 -2,-0.2 0.940 111.8 50.4 -62.0 -49.7 27.6 27.8 44.6 68 372 C G H X S+ 0 0 26 -4,-1.9 4,-1.2 1,-0.2 -1,-0.2 0.831 114.5 46.6 -57.8 -32.9 24.7 25.3 44.9 69 373 C E H X S+ 0 0 115 -4,-1.7 4,-2.2 2,-0.2 -2,-0.2 0.936 111.0 49.0 -73.7 -51.6 26.6 23.8 47.8 70 374 C K H X S+ 0 0 53 -4,-3.6 4,-3.5 1,-0.2 5,-0.4 0.914 105.3 61.4 -54.8 -43.3 27.4 27.1 49.6 71 375 C I H X S+ 0 0 7 -4,-3.0 4,-1.6 1,-0.2 -1,-0.2 0.939 108.6 40.7 -48.0 -56.1 23.7 28.1 49.2 72 376 C T H X S+ 0 0 76 -4,-1.2 4,-1.5 2,-0.2 -1,-0.2 0.874 116.8 49.7 -62.9 -40.1 22.5 25.1 51.3 73 377 C S H >X S+ 0 0 50 -4,-2.2 4,-2.0 1,-0.2 3,-0.8 0.987 112.2 46.0 -61.9 -58.8 25.3 25.5 53.8 74 378 C L H 3X S+ 0 0 6 -4,-3.5 4,-2.2 1,-0.3 5,-0.2 0.802 106.2 65.2 -54.5 -27.9 24.7 29.2 54.2 75 379 C H H 3X S+ 0 0 103 -4,-1.6 4,-2.0 -5,-0.4 -1,-0.3 0.938 104.9 40.4 -61.4 -49.2 21.1 28.3 54.5 76 380 C R H X S+ 0 0 85 -4,-4.0 4,-2.2 2,-0.2 3,-1.2 0.985 116.5 46.5 -66.0 -58.1 20.9 28.3 63.1 81 385 C V H 3X S+ 0 0 0 -4,-4.0 4,-1.5 1,-0.3 -2,-0.2 0.823 107.0 57.3 -52.6 -39.7 21.9 31.9 63.7 82 386 C K H 3X S+ 0 0 80 -4,-3.4 4,-1.7 -5,-0.2 -1,-0.3 0.831 110.0 47.2 -63.6 -28.9 18.3 33.1 63.5 83 387 C L H X S+ 0 0 10 -4,-1.5 4,-2.9 -5,-0.3 3,-0.7 0.922 103.5 54.0 -77.3 -47.4 19.2 35.2 68.0 86 390 C K H 3X S+ 0 0 132 -4,-1.7 4,-1.3 1,-0.3 -2,-0.2 0.874 110.3 50.0 -52.9 -40.1 15.6 34.4 69.0 87 391 C R H 3X S+ 0 0 139 -4,-2.0 4,-1.1 2,-0.2 -1,-0.3 0.764 109.6 50.4 -71.1 -28.9 17.1 33.0 72.2 88 392 C L H S+ 0 0 6 -4,-0.5 4,-1.2 2,-0.2 -2,-0.2 0.818 110.7 49.9 -83.4 -35.9 12.5 46.2 90.6 103 407 C E H X S+ 0 0 60 -4,-1.4 4,-1.4 1,-0.2 -2,-0.2 0.615 107.6 55.1 -77.3 -15.7 12.2 49.9 89.8 104 408 C D H 4 S+ 0 0 107 -4,-0.2 -1,-0.2 2,-0.2 -2,-0.2 0.803 107.7 48.5 -84.6 -33.6 8.5 49.8 90.5 105 409 C L H X S+ 0 0 78 -4,-0.8 4,-0.6 1,-0.2 -2,-0.2 0.795 118.6 40.9 -74.8 -28.7 9.1 48.3 94.0 106 410 C L H < S+ 0 0 1 -4,-1.2 4,-0.4 2,-0.1 -2,-0.2 0.786 99.3 68.8 -90.4 -33.8 11.7 51.0 94.7 107 411 C S T >X S+ 0 0 56 -4,-1.4 4,-0.7 1,-0.2 3,-0.7 0.874 101.9 48.7 -55.0 -41.6 10.1 54.1 93.3 108 412 C P T 34 S+ 0 0 90 0, 0.0 3,-0.2 0, 0.0 -1,-0.2 0.959 114.8 41.3 -63.7 -54.0 7.4 54.1 96.0 109 413 C L T 3X S+ 0 0 28 -4,-0.6 4,-0.6 1,-0.2 -2,-0.2 0.262 99.1 79.1 -82.0 13.1 9.7 53.7 99.1 110 414 C E T X4 S+ 0 0 86 -3,-0.7 3,-0.7 -4,-0.4 -1,-0.2 0.952 94.8 39.1 -84.6 -56.6 12.4 56.1 97.9 111 415 C E T 3< S+ 0 0 186 -4,-0.7 -1,-0.2 -3,-0.2 -2,-0.1 0.330 115.3 59.6 -76.7 9.7 11.0 59.5 98.7 112 416 C S T 34 0 0 86 -4,-0.1 -1,-0.2 0, 0.0 -2,-0.2 0.681 360.0 360.0-106.0 -30.1 9.6 58.0 101.9 113 417 C V << 0 0 63 -3,-0.7 -2,-0.2 -4,-0.6 -3,-0.1 0.877 360.0 360.0 -93.7 360.0 13.0 56.8 103.4 114 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 115 364 A W 0 0 253 0, 0.0 4,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -39.0 22.1 25.2 32.1 116 365 A D >> + 0 0 72 2,-0.1 4,-1.9 3,-0.1 3,-0.6 0.662 360.0 64.0-118.0 -42.6 20.7 28.8 32.4 117 366 A R H 3> S+ 0 0 202 1,-0.3 4,-0.7 2,-0.2 5,-0.1 0.812 102.5 56.0 -54.1 -32.0 17.4 28.2 34.3 118 367 A T H 3> S+ 0 0 65 2,-0.2 4,-1.9 1,-0.1 -1,-0.3 0.852 104.4 52.9 -69.4 -36.5 19.7 27.0 37.2 119 368 A L H X> S+ 0 0 11 -3,-0.6 4,-2.3 1,-0.2 3,-0.7 0.994 107.3 48.2 -62.5 -62.4 21.5 30.3 37.1 120 369 A I H 3X S+ 0 0 89 -4,-1.9 4,-0.8 1,-0.3 -1,-0.2 0.707 111.5 54.6 -52.6 -20.3 18.5 32.5 37.4 121 370 A E H 3X S+ 0 0 87 -4,-0.7 4,-2.3 -5,-0.3 -1,-0.3 0.889 107.1 47.0 -82.2 -40.5 17.4 30.3 40.3 122 371 A N H X S+ 0 0 44 -4,-1.7 4,-2.1 -3,-0.5 3,-1.1 0.940 111.4 49.0 -67.0 -49.4 21.7 51.6 91.9 159 408 A D H 3< S+ 0 0 112 -4,-2.8 -1,-0.2 1,-0.3 -2,-0.2 0.893 111.1 53.1 -56.8 -37.6 21.6 55.3 92.6 160 409 A L H 3< S+ 0 0 32 -4,-1.6 4,-0.4 -5,-0.3 -1,-0.3 0.686 110.4 48.4 -70.9 -20.1 18.0 54.7 93.7 161 410 A L H XX S+ 0 0 0 -3,-1.1 4,-2.5 -4,-0.7 3,-0.5 0.884 95.1 66.5 -90.0 -44.7 19.1 52.0 96.1 162 411 A S H 3X S+ 0 0 44 -4,-2.1 4,-1.3 1,-0.2 5,-0.2 0.925 101.2 49.9 -44.2 -59.9 22.0 53.5 98.0 163 412 A P H 3> S+ 0 0 78 0, 0.0 4,-1.7 0, 0.0 -1,-0.2 0.863 114.1 46.5 -48.5 -41.1 19.9 56.2 99.8 164 413 A L H <4 S+ 0 0 2 -3,-0.5 4,-0.2 -4,-0.4 -2,-0.2 0.876 112.6 47.2 -70.9 -41.2 17.4 53.5 100.9 165 414 A E H < S+ 0 0 51 -4,-2.5 -1,-0.2 -3,-0.2 -3,-0.1 0.555 111.1 54.6 -78.8 -7.1 20.0 51.0 102.1 166 415 A E H >< S+ 0 0 86 -4,-1.3 3,-2.1 -5,-0.3 -2,-0.2 0.893 98.6 56.8 -90.6 -47.7 21.8 53.7 104.0 167 416 A S T 3< S+ 0 0 70 -4,-1.7 -2,-0.2 1,-0.3 -1,-0.1 0.582 114.6 44.9 -63.4 -1.2 18.9 55.1 106.1 168 417 A V T 3 S+ 0 0 17 -4,-0.2 2,-2.1 -5,-0.1 -1,-0.3 0.368 73.2 108.8-121.5 1.4 18.6 51.5 107.4 169 418 A K < 0 0 154 -3,-2.1 -1,-0.1 1,-0.2 -2,-0.1 -0.123 360.0 360.0 -73.5 43.2 22.2 50.5 108.1 170 419 A E 0 0 195 -2,-2.1 -1,-0.2 -3,-0.0 -2,-0.1 0.921 360.0 360.0 -90.6 360.0 21.3 50.6 111.8