==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING PROTEIN 09-JAN-97 2TBD . COMPND 2 MOLECULE: SV40 T ANTIGEN; . SOURCE 2 ORGANISM_SCIENTIFIC: SIMIAN VIRUS 40; . AUTHOR X.LUO,D.G.SANFORD,P.A.BULLOCK,W.W.BACHOVCHIN . 134 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7839.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 82 61.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 28 20.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 0.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 0.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 6.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 15 11.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 26 19.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 118 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -6.7 112.9 -8.3 28.3 2 2 A S + 0 0 120 1,-0.2 3,-0.1 2,-0.1 0, 0.0 0.274 360.0 111.3-164.9 -40.8 114.4 -10.3 25.4 3 3 A K S S- 0 0 170 1,-0.1 -1,-0.2 3,-0.0 3,-0.1 -0.251 85.5 -96.2 -50.6 124.8 111.8 -10.8 22.7 4 4 A V - 0 0 101 1,-0.1 2,-0.3 -3,-0.1 -1,-0.1 -0.097 45.1-107.6 -43.0 137.4 113.0 -8.7 19.7 5 5 A E - 0 0 167 -3,-0.1 -1,-0.1 1,-0.1 -2,-0.0 -0.541 32.5-128.9 -73.1 131.1 111.2 -5.3 19.8 6 6 A D - 0 0 84 -2,-0.3 2,-0.4 -3,-0.1 -1,-0.1 -0.619 19.9-118.2 -83.1 141.1 108.6 -5.1 17.1 7 7 A P - 0 0 18 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 -0.611 21.5-169.9 -78.5 127.7 108.7 -2.0 14.9 8 8 A K S S- 0 0 182 -2,-0.4 2,-0.3 2,-0.1 -2,-0.0 0.386 71.1 -22.3 -98.5 4.4 105.5 0.1 15.0 9 9 A D S S- 0 0 83 85,-0.0 -1,-0.1 87,-0.0 85,-0.1 -0.968 95.3 -40.9 178.0-165.4 106.6 2.3 12.1 10 10 A F - 0 0 12 -2,-0.3 2,-0.2 1,-0.1 -2,-0.1 -0.536 60.8-106.7 -83.7 153.5 109.6 3.5 10.1 11 11 A P >> - 0 0 25 0, 0.0 3,-1.6 0, 0.0 4,-0.8 -0.500 30.5-109.8 -77.5 142.9 112.8 4.5 11.8 12 12 A S G >4 S+ 0 0 94 1,-0.3 3,-0.7 2,-0.2 4,-0.2 0.790 114.0 77.7 -44.2 -24.7 113.7 8.2 12.1 13 13 A E G >4 S+ 0 0 87 1,-0.3 3,-0.6 2,-0.2 -1,-0.3 0.961 105.8 27.5 -53.2 -53.4 116.4 7.3 9.6 14 14 A L G X4 S+ 0 0 2 -3,-1.6 3,-1.0 1,-0.2 -1,-0.3 0.398 100.3 90.5 -90.3 6.1 113.9 7.2 6.6 15 15 A L G << + 0 0 69 -4,-0.8 3,-0.3 -3,-0.7 -1,-0.2 0.411 68.7 78.7 -80.8 7.1 111.7 9.7 8.4 16 16 A S G < S+ 0 0 109 -3,-0.6 -1,-0.2 1,-0.2 -2,-0.1 0.711 109.2 18.4 -86.5 -19.5 113.6 12.4 6.6 17 17 A F S < S+ 0 0 19 -3,-1.0 83,-0.3 86,-0.1 -1,-0.2 -0.509 96.4 106.4-150.2 76.9 111.7 11.9 3.3 18 18 A L - 0 0 10 -3,-0.3 80,-0.2 80,-0.2 -3,-0.1 -0.724 61.8-122.7-138.4-170.7 108.4 10.0 3.7 19 19 A S + 0 0 19 78,-0.9 2,-2.2 -2,-0.2 -1,-0.1 0.820 29.7 172.7-105.7 -56.4 104.7 10.7 3.6 20 20 A H + 0 0 84 77,-0.3 -1,-0.1 1,-0.1 4,-0.1 -0.452 46.8 103.9 80.2 -72.5 103.3 9.5 6.9 21 21 A A - 0 0 43 -2,-2.2 3,-0.2 1,-0.2 -1,-0.1 -0.140 47.7-175.9 -43.1 125.1 99.7 10.8 6.3 22 22 A V S S+ 0 0 68 1,-0.1 -1,-0.2 -3,-0.1 59,-0.1 0.697 81.7 40.2-100.3 -23.6 97.6 7.7 5.5 23 23 A F S S+ 0 0 173 54,-0.1 -1,-0.1 55,-0.1 -2,-0.1 -0.024 86.6 133.0-112.9 30.7 94.4 9.6 4.8 24 24 A S - 0 0 53 -3,-0.2 54,-0.1 1,-0.1 -4,-0.0 0.041 61.1-125.6 -67.5-173.1 95.9 12.5 2.9 25 25 A N S S+ 0 0 144 51,-0.0 2,-0.4 52,-0.0 -1,-0.1 0.183 73.4 106.6-122.2 15.7 94.5 13.7 -0.4 26 26 A R - 0 0 177 49,-0.0 2,-0.8 1,-0.0 51,-0.6 -0.763 65.7-133.9 -97.3 141.5 97.7 13.5 -2.5 27 27 A T E -A 76 0A 72 -2,-0.4 2,-0.3 49,-0.2 49,-0.2 -0.808 26.4-172.5 -96.1 110.5 98.1 10.7 -5.1 28 28 A L E -A 75 0A 18 47,-1.0 47,-1.0 -2,-0.8 71,-0.1 -0.766 20.4-165.3-102.0 148.2 101.6 9.2 -4.8 29 29 A A E S+ 0 0 27 -2,-0.3 42,-1.1 69,-0.2 2,-0.4 0.355 73.5 68.7-110.4 3.9 103.0 6.6 -7.3 30 30 A C E +A 70 0A 0 68,-0.4 68,-1.8 40,-0.2 2,-0.3 -0.977 59.7 172.0-125.1 132.4 105.9 5.5 -5.0 31 31 A F E -AB 69 97A 1 38,-1.7 38,-1.9 -2,-0.4 2,-0.5 -0.949 22.9-148.0-137.0 158.9 105.5 3.5 -1.8 32 32 A A E -AB 68 96A 0 64,-1.8 64,-1.4 -2,-0.3 2,-0.3 -0.897 14.0-156.0-130.3 105.2 107.8 1.8 0.7 33 33 A I E -AB 67 95A 1 34,-2.1 34,-0.8 -2,-0.5 2,-0.5 -0.581 7.2-167.7 -80.2 140.4 106.4 -1.3 2.5 34 34 A Y E +AB 66 94A 4 60,-0.7 60,-1.3 -2,-0.3 2,-0.3 -0.895 34.5 108.7-131.1 104.8 108.0 -2.2 5.8 35 35 A T E S-AB 65 93A 0 30,-1.7 30,-1.6 -2,-0.5 5,-0.2 -0.942 70.9 -42.0-159.6-179.8 107.2 -5.6 7.3 36 36 A T > - 0 0 19 56,-0.5 4,-1.8 -2,-0.3 3,-0.4 -0.023 59.2-113.4 -46.9 158.3 108.7 -9.0 8.1 37 37 A K H > S+ 0 0 121 1,-0.2 4,-2.2 26,-0.2 5,-0.3 0.966 116.5 57.9 -64.3 -50.8 110.9 -10.4 5.3 38 38 A E H > S+ 0 0 147 1,-0.2 4,-1.0 2,-0.2 -1,-0.2 0.813 107.4 52.8 -50.7 -26.1 108.5 -13.3 4.4 39 39 A K H >> S+ 0 0 0 -3,-0.4 4,-2.1 2,-0.2 3,-0.8 0.965 103.9 51.1 -76.2 -53.5 105.9 -10.5 3.8 40 40 A A H 3X S+ 0 0 0 -4,-1.8 4,-1.5 1,-0.3 -2,-0.2 0.887 109.1 54.4 -51.8 -37.2 108.0 -8.4 1.4 41 41 A A H 3X S+ 0 0 38 -4,-2.2 4,-1.5 1,-0.2 -1,-0.3 0.879 107.1 50.1 -66.7 -34.5 108.6 -11.6 -0.6 42 42 A L H << S+ 0 0 76 -4,-1.0 4,-0.5 -3,-0.8 -2,-0.2 0.865 114.8 42.9 -72.6 -33.7 104.8 -12.2 -0.8 43 43 A L H X>S+ 0 0 0 -4,-2.1 4,-1.7 3,-0.2 5,-0.6 0.685 106.7 64.1 -85.6 -16.3 104.1 -8.6 -2.0 44 44 A Y H X5S+ 0 0 30 -4,-1.5 4,-1.3 -5,-0.3 -2,-0.2 0.976 109.2 36.3 -71.0 -53.0 107.1 -8.7 -4.4 45 45 A K H <5S+ 0 0 177 -4,-1.5 -1,-0.2 2,-0.1 -2,-0.2 0.678 124.2 48.3 -73.2 -13.7 105.7 -11.5 -6.6 46 46 A K H >>5S+ 0 0 96 -4,-0.5 3,-2.1 -5,-0.2 4,-1.2 0.927 115.6 34.8 -90.0 -68.5 102.2 -10.0 -6.1 47 47 A I H 3X>S+ 0 0 0 -4,-1.7 4,-2.3 1,-0.3 6,-0.8 0.843 97.4 87.4 -56.2 -29.7 102.5 -6.2 -6.8 48 48 A M H 3<> -A 27 0A 104 -2,-0.3 4,-1.8 -49,-0.2 3,-1.2 -0.484 31.5-118.5 -74.9 146.5 96.3 7.3 -3.0 77 77 A V H 3> S+ 0 0 9 -51,-0.6 4,-1.4 1,-0.3 -1,-0.1 0.757 115.8 66.1 -58.4 -16.7 98.3 5.7 -0.2 78 78 A S H 3> S+ 0 0 39 2,-0.2 4,-1.4 3,-0.2 -1,-0.3 0.913 104.7 41.3 -71.5 -39.1 94.8 4.8 1.1 79 79 A A H X> S+ 0 0 51 -3,-1.2 4,-1.2 2,-0.2 3,-0.9 0.988 117.9 43.5 -71.8 -59.5 94.3 2.4 -1.9 80 80 A I H 3X S+ 0 0 1 -4,-1.8 4,-1.8 1,-0.3 3,-0.5 0.867 108.9 63.3 -54.7 -30.5 97.8 0.9 -1.9 81 81 A N H 3X S+ 0 0 40 -4,-1.4 4,-1.9 -5,-0.4 -1,-0.3 0.933 95.5 56.3 -61.0 -42.1 97.4 0.7 1.8 82 82 A N H X S+ 0 0 10 -4,-1.2 4,-0.8 -3,-0.5 3,-0.7 0.999 109.4 39.5 -66.5 -66.3 96.9 -3.8 -0.6 84 84 A A H 3< S+ 0 0 0 -4,-1.8 3,-0.3 1,-0.2 -1,-0.2 0.776 114.9 58.8 -56.2 -21.9 99.6 -4.2 2.1 85 85 A Q H >< S+ 0 0 80 -4,-1.9 3,-1.2 -5,-0.3 -1,-0.2 0.909 94.1 60.5 -76.1 -40.0 96.7 -4.6 4.6 86 86 A K H << S+ 0 0 158 -4,-2.0 -1,-0.2 -3,-0.7 -2,-0.2 0.734 104.8 54.8 -59.7 -15.9 95.2 -7.6 2.8 87 87 A L T 3< S+ 0 0 10 -4,-0.8 -1,-0.3 -3,-0.3 3,-0.2 -0.261 80.5 95.6-110.9 46.8 98.6 -9.2 3.6 88 88 A C < + 0 0 46 -3,-1.2 -1,-0.2 1,-0.1 5,-0.1 -0.168 51.5 93.3-127.0 42.0 98.5 -8.6 7.4 89 89 A T S S+ 0 0 116 -3,-0.2 -1,-0.1 1,-0.1 3,-0.1 0.044 86.6 45.7-120.0 25.5 97.2 -11.9 8.7 90 90 A F S S- 0 0 95 1,-0.5 2,-0.3 -3,-0.2 -1,-0.1 0.183 123.8 -19.3-149.6 15.6 100.5 -13.6 9.4 91 91 A S S S- 0 0 67 -3,-0.1 -1,-0.5 -52,-0.0 -56,-0.0 -0.949 90.6 -47.8 161.6-178.9 102.6 -11.0 11.1 92 92 A F - 0 0 36 -2,-0.3 -56,-0.5 -3,-0.1 2,-0.3 -0.246 49.6-154.4 -71.7 167.5 102.8 -7.2 11.7 93 93 A L E +B 35 0A 29 -58,-0.1 -58,-0.2 -5,-0.1 2,-0.1 -0.965 21.7 171.9-148.4 128.8 102.5 -4.8 8.8 94 94 A I E +B 34 0A 13 -60,-1.3 -60,-0.7 -2,-0.3 2,-0.3 -0.482 15.3 167.2-135.4 67.2 103.8 -1.3 8.3 95 95 A C E +B 33 0A 18 -62,-0.2 2,-0.3 -14,-0.1 -62,-0.2 -0.602 10.1 168.4 -82.1 140.9 103.3 -0.2 4.7 96 96 A K E -B 32 0A 14 -64,-1.4 -64,-1.8 -2,-0.3 2,-0.2 -0.849 28.9-111.4-141.5 178.4 103.7 3.6 4.0 97 97 A G E -B 31 0A 1 -66,-0.3 -78,-0.9 -2,-0.3 2,-0.3 -0.492 21.7-142.2-106.6-179.5 104.0 6.0 1.0 98 98 A V - 0 0 1 -68,-1.8 -68,-0.4 -80,-0.2 3,-0.2 -0.984 16.2-172.9-147.6 134.5 107.0 8.0 -0.3 99 99 A N S S+ 0 0 69 -2,-0.3 2,-0.8 1,-0.2 -1,-0.1 0.823 87.5 43.6 -94.5 -36.9 107.3 11.5 -1.8 100 100 A K > + 0 0 71 -83,-0.3 4,-2.3 1,-0.2 -1,-0.2 -0.803 65.4 176.9-111.2 93.2 110.9 11.4 -2.8 101 101 A E H >>S+ 0 0 27 -2,-0.8 4,-1.5 -3,-0.2 5,-0.5 0.994 78.6 46.8 -57.5 -71.1 111.6 8.0 -4.4 102 102 A Y H >5S+ 0 0 112 1,-0.2 4,-1.9 2,-0.2 -1,-0.1 0.906 116.6 44.3 -36.7 -66.8 115.3 8.5 -5.4 103 103 A L H >5S+ 0 0 50 2,-0.2 4,-2.2 3,-0.2 3,-0.4 0.956 114.2 50.3 -47.3 -60.1 116.3 9.9 -2.0 104 104 A M H >X5S+ 0 0 0 -4,-2.3 4,-1.9 1,-0.3 3,-0.6 0.942 114.4 40.1 -43.7 -78.9 114.3 7.2 -0.0 105 105 A Y H 3X5S+ 0 0 14 -4,-1.5 4,-1.7 1,-0.2 -1,-0.3 0.787 112.1 64.9 -44.6 -24.6 115.7 4.2 -1.8 106 106 A S H >X< S- 0 0 200 -4,-1.8 3,-1.6 -5,-0.2 4,-0.0 -0.674 98.7 -49.0 -90.0 143.8 123.5 3.1 2.0 111 111 A D T 3 S+ 0 0 138 1,-0.4 -1,-0.1 -2,-0.3 -2,-0.1 0.008 120.9 37.7 -42.4 157.8 124.1 2.0 5.6 112 112 A P T 3 S+ 0 0 70 0, 0.0 2,-0.6 0, 0.0 -1,-0.4 -0.939 117.6 65.3 -82.1 19.5 122.8 1.4 8.0 113 113 A F < - 0 0 2 -3,-1.6 -52,-0.2 -6,-0.5 2,-0.1 -0.852 69.8-159.8-101.4 122.7 120.4 -0.2 5.4 114 114 A S E -D 60 0A 58 -54,-1.6 -54,-1.5 -2,-0.6 2,-0.4 -0.372 16.6-117.9 -90.6 175.3 121.7 -3.1 3.4 115 115 A V E +D 59 0A 55 -56,-0.2 -56,-0.2 1,-0.1 3,-0.1 -0.935 27.6 174.6-117.7 137.5 120.3 -4.3 0.0 116 116 A I E - 0 0 39 -58,-1.8 2,-0.3 -2,-0.4 -57,-0.2 0.830 61.2 -31.4-104.7 -61.7 118.8 -7.8 -0.5 117 117 A E E +D 58 0A 122 -59,-1.4 -59,-1.0 0, 0.0 -1,-0.4 -0.945 52.3 178.4-152.1 173.0 117.4 -7.9 -4.1 118 118 A E E -D 57 0A 60 -2,-0.3 -61,-0.2 -61,-0.3 5,-0.0 -0.931 35.6-126.6-175.2 151.1 115.7 -5.8 -6.7 119 119 A S S S+ 0 0 58 -63,-1.4 -62,-0.1 -2,-0.3 -1,-0.1 0.800 91.0 78.9 -78.3 -26.7 114.4 -6.0 -10.3 120 120 A L S > S- 0 0 47 -64,-0.2 3,-0.7 1,-0.1 4,-0.1 -0.540 81.7-132.2 -82.6 150.9 116.5 -3.1 -11.4 121 121 A P T 3 S+ 0 0 137 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 0.460 106.9 21.9 -78.5 -2.6 120.2 -3.5 -12.2 122 122 A G T 3 S- 0 0 44 1,-0.6 -3,-0.0 2,-0.2 3,-0.0 -0.041 115.3 -96.5-156.4 41.5 121.0 -0.4 -10.1 123 123 A G S < S- 0 0 2 -3,-0.7 -1,-0.6 1,-0.1 -67,-0.1 -0.322 86.5 -20.0 71.7-159.2 118.1 0.1 -7.7 124 124 A L S S+ 0 0 0 1,-0.2 -2,-0.2 -22,-0.1 -1,-0.1 0.905 74.7 142.0 -45.2 -92.5 115.4 2.7 -8.6 125 125 A K + 0 0 70 1,-0.2 -1,-0.2 -5,-0.1 -2,-0.1 0.720 32.6 161.0 57.3 15.5 117.2 4.7 -11.3 126 126 A E > - 0 0 58 1,-0.1 2,-1.3 2,-0.1 3,-0.7 -0.350 49.1-123.0 -66.3 148.5 113.8 4.8 -13.0 127 127 A H T 3 S+ 0 0 162 1,-0.2 -1,-0.1 -3,-0.1 -2,-0.0 -0.362 98.4 67.2 -90.6 59.1 113.5 7.5 -15.6 128 128 A D T 3 + 0 0 126 -2,-1.3 -1,-0.2 2,-0.1 -2,-0.1 0.162 68.0 115.3-160.2 22.0 110.4 9.1 -14.0 129 129 A F < - 0 0 38 -3,-0.7 -29,-0.1 1,-0.1 -2,-0.0 -0.040 62.9-104.8 -84.2-165.3 111.5 10.5 -10.7 130 130 A N - 0 0 116 2,-0.0 -28,-0.1 1,-0.0 -1,-0.1 -0.954 22.7-121.0-128.2 148.4 111.4 14.2 -9.8 131 131 A P + 0 0 115 0, 0.0 2,-0.3 0, 0.0 -1,-0.0 -0.270 36.5 161.3 -77.9 166.4 114.2 16.8 -9.4 132 132 A E - 0 0 62 2,-0.1 -2,-0.0 -2,-0.0 0, 0.0 -0.886 51.4 -66.2 178.8 149.3 115.0 18.7 -6.2 133 133 A S 0 0 129 -2,-0.3 0, 0.0 1,-0.0 0, 0.0 -0.201 360.0 360.0 -46.6 120.6 117.7 20.7 -4.5 134 134 A S 0 0 168 0, 0.0 -2,-0.1 0, 0.0 -1,-0.0 -0.912 360.0 360.0-143.1 360.0 120.5 18.2 -3.9