==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=18-JAN-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA BINDING PROTEIN 27-SEP-11 3TZD . COMPND 2 MOLECULE: CHROMOBOX PROTEIN HOMOLOG 3; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.F.AMAYA,M.RAVICHANDRAN,P.LOPPNAU,I.KOZIERADZKI,A.M.EDWARDS . 70 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5031.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 45 64.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 23 32.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 4.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 14.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 12.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 24 A L > 0 0 155 0, 0.0 3,-1.6 0, 0.0 70,-0.1 0.000 360.0 360.0 360.0 -46.8 21.6 28.7 8.8 2 25 A Y T 3 + 0 0 205 1,-0.3 69,-0.1 69,-0.0 0, 0.0 0.649 360.0 49.4 -65.2 -12.7 24.2 31.5 8.8 3 26 A F T 3 S+ 0 0 100 67,-0.2 65,-0.6 66,-0.1 68,-0.5 0.423 91.0 103.1-105.5 2.6 26.5 29.5 6.4 4 27 A Q < + 0 0 113 -3,-1.6 65,-0.0 66,-0.1 66,-0.0 -0.244 65.0 26.9 -79.0 168.0 23.8 28.6 3.9 5 28 A G S S- 0 0 30 63,-0.1 63,-0.6 2,-0.0 2,-0.3 -0.237 98.4 -49.1 75.6-159.3 23.3 30.3 0.5 6 29 A E E -A 67 0A 42 61,-0.2 2,-0.3 55,-0.1 61,-0.2 -0.798 41.6-164.3-119.6 152.8 26.1 31.9 -1.5 7 30 A F E -A 66 0A 54 59,-2.6 59,-2.0 -2,-0.3 2,-0.3 -0.911 35.4 -93.3-130.7 153.7 28.9 34.4 -0.7 8 31 A V E -A 65 0A 52 -2,-0.3 21,-2.0 57,-0.2 2,-0.5 -0.529 35.3-141.0 -70.7 130.9 31.1 36.5 -3.0 9 32 A V E -C 28 0B 0 55,-2.3 19,-0.2 -2,-0.3 3,-0.1 -0.808 13.7-170.3 -91.0 127.7 34.5 34.9 -3.8 10 33 A E E - 0 0 72 17,-2.4 2,-0.3 -2,-0.5 18,-0.2 0.893 65.5 -15.5 -84.5 -44.7 37.5 37.2 -3.9 11 34 A K E -C 27 0B 125 16,-1.5 16,-2.5 42,-0.0 2,-0.5 -0.993 52.8-125.7-157.7 161.1 40.1 34.9 -5.4 12 35 A V E +C 26 0B 3 -2,-0.3 14,-0.2 37,-0.3 3,-0.1 -0.938 28.8 175.0-110.4 120.8 40.9 31.2 -6.1 13 36 A L E - 0 0 67 12,-3.2 2,-0.3 -2,-0.5 13,-0.1 0.624 54.3 -9.3-104.3 -22.5 44.3 30.3 -4.6 14 37 A D E -C 25 0B 77 11,-0.8 11,-2.2 2,-0.0 2,-0.3 -0.973 51.6-135.0-169.9 168.6 44.8 26.6 -5.1 15 38 A R E +C 24 0B 119 -2,-0.3 2,-0.3 9,-0.3 9,-0.2 -0.988 23.4 168.5-137.8 143.1 43.3 23.3 -6.2 16 39 A R E -C 23 0B 108 7,-2.8 7,-3.0 -2,-0.3 2,-0.4 -0.942 28.3-124.3-146.1 170.8 43.4 19.8 -4.7 17 40 A V E +C 22 0B 106 -2,-0.3 2,-0.4 5,-0.2 5,-0.2 -0.978 24.4 176.5-120.2 129.9 41.8 16.4 -5.0 18 41 A V E > S-C 21 0B 63 3,-2.7 3,-1.7 -2,-0.4 -2,-0.0 -0.962 70.8 -24.1-131.9 116.1 40.1 14.6 -2.0 19 42 A N T 3 S- 0 0 165 -2,-0.4 3,-0.1 1,-0.3 -1,-0.1 0.920 127.1 -45.9 53.9 46.0 38.3 11.3 -2.4 20 43 A G T 3 S+ 0 0 75 1,-0.2 2,-0.4 0, 0.0 -1,-0.3 0.498 117.9 108.0 80.4 0.4 37.6 11.7 -6.1 21 44 A K E < -C 18 0B 106 -3,-1.7 -3,-2.7 20,-0.0 2,-0.4 -0.926 64.1-134.0-114.9 140.7 36.4 15.3 -5.8 22 45 A V E -C 17 0B 36 -2,-0.4 19,-2.3 -5,-0.2 2,-0.3 -0.757 25.9-171.9 -92.8 130.6 38.2 18.4 -6.9 23 46 A E E -CD 16 40B 33 -7,-3.0 -7,-2.8 -2,-0.4 2,-0.4 -0.931 11.2-148.8-120.3 148.0 38.3 21.3 -4.4 24 47 A Y E -CD 15 39B 10 15,-2.5 15,-2.4 -2,-0.3 2,-0.5 -0.940 17.5-127.1-115.8 143.4 39.5 24.9 -4.8 25 48 A F E -CD 14 38B 55 -11,-2.2 -12,-3.2 -2,-0.4 -11,-0.8 -0.793 36.2-162.4 -91.9 120.5 41.0 27.0 -1.9 26 49 A L E -CD 12 37B 0 11,-3.0 11,-1.3 -2,-0.5 2,-0.5 -0.864 24.6-151.7-114.9 140.2 39.0 30.3 -1.8 27 50 A K E -C 11 0B 27 -16,-2.5 -17,-2.4 -2,-0.4 -16,-1.5 -0.945 30.3-139.8 -97.7 126.2 39.6 33.7 -0.3 28 51 A W E > -C 9 0B 0 -2,-0.5 3,-2.0 4,-0.3 -19,-0.2 -0.721 19.5-106.9 -94.3 137.1 36.1 35.2 0.5 29 52 A K T 3 S+ 0 0 119 -21,-2.0 -21,-0.2 -2,-0.4 3,-0.1 -0.334 105.0 16.6 -60.2 133.2 35.3 38.8 -0.2 30 53 A G T 3 S+ 0 0 80 1,-0.3 2,-0.3 -2,-0.0 -1,-0.3 0.360 110.2 95.9 87.2 -9.1 35.1 40.8 3.0 31 54 A F S < S- 0 0 77 -3,-2.0 -1,-0.3 1,-0.1 2,-0.1 -0.765 73.6-115.3-113.1 160.6 36.9 38.1 5.1 32 55 A T > - 0 0 90 -2,-0.3 3,-1.9 -3,-0.1 -4,-0.3 -0.385 38.5 -97.3 -83.7 169.3 40.5 37.7 6.1 33 56 A D G > S+ 0 0 111 1,-0.3 3,-2.2 2,-0.2 -1,-0.1 0.780 119.5 73.4 -54.1 -28.7 42.8 34.8 4.9 34 57 A A G 3 S+ 0 0 91 1,-0.3 -1,-0.3 -7,-0.0 -7,-0.0 0.786 94.8 52.7 -59.6 -26.2 42.0 33.1 8.2 35 58 A D G < S+ 0 0 77 -3,-1.9 -1,-0.3 -7,-0.1 -2,-0.2 0.314 79.0 129.5 -92.5 9.3 38.5 32.4 6.8 36 59 A N < - 0 0 23 -3,-2.2 2,-0.3 -9,-0.1 -9,-0.2 -0.322 37.5-173.4 -63.5 142.8 39.8 30.8 3.6 37 60 A T E -D 26 0B 45 -11,-1.3 -11,-3.0 -13,-0.1 2,-0.5 -0.969 28.2-119.1-136.5 159.3 38.2 27.4 2.8 38 61 A W E -D 25 0B 58 -2,-0.3 -13,-0.2 -13,-0.2 31,-0.2 -0.834 36.0-175.0 -91.4 133.0 38.4 24.5 0.5 39 62 A E E -D 24 0B 3 -15,-2.4 -15,-2.5 -2,-0.5 29,-0.1 -0.989 24.4-114.3-132.1 140.5 35.2 24.0 -1.5 40 63 A P E > -D 23 0B 11 0, 0.0 3,-2.6 0, 0.0 4,-0.4 -0.332 33.0-108.3 -72.2 150.9 34.2 21.3 -4.0 41 64 A E G > S+ 0 0 101 -19,-2.3 3,-1.8 1,-0.3 -18,-0.1 0.821 117.5 62.6 -38.9 -46.5 33.6 22.1 -7.6 42 65 A E G 3 S+ 0 0 103 1,-0.3 -1,-0.3 3,-0.0 -19,-0.1 0.688 100.4 54.8 -60.3 -20.2 29.8 21.6 -7.2 43 66 A N G < S+ 0 0 17 -3,-2.6 24,-2.4 24,-0.1 2,-0.3 0.563 94.7 96.8 -84.9 -13.0 29.8 24.6 -4.7 44 67 A L E < +B 66 0A 29 -3,-1.8 22,-0.2 -4,-0.4 20,-0.0 -0.627 32.5 163.0 -95.3 140.7 31.4 27.0 -7.1 45 68 A D E +B 65 0A 64 20,-2.6 20,-2.1 -2,-0.3 19,-0.5 -0.417 53.8 101.3-139.2 60.2 30.1 29.7 -9.5 46 69 A C > + 0 0 2 18,-0.3 4,-2.3 17,-0.1 3,-0.3 -0.359 31.7 154.2-137.6 59.0 33.3 31.6 -10.1 47 70 A P H > S+ 0 0 85 0, 0.0 4,-2.8 0, 0.0 5,-0.2 0.833 72.9 54.2 -65.8 -32.4 34.5 30.4 -13.5 48 71 A E H > S+ 0 0 160 1,-0.2 4,-2.2 2,-0.2 5,-0.2 0.906 110.9 46.1 -67.2 -37.5 36.5 33.6 -14.4 49 72 A L H > S+ 0 0 32 -3,-0.3 4,-2.3 2,-0.2 -37,-0.3 0.900 112.8 49.9 -70.1 -37.9 38.4 33.3 -11.1 50 73 A I H X S+ 0 0 30 -4,-2.3 4,-2.7 2,-0.2 5,-0.2 0.946 112.1 48.5 -63.7 -48.5 39.1 29.6 -11.7 51 74 A E H X S+ 0 0 114 -4,-2.8 4,-2.9 1,-0.2 -2,-0.2 0.911 111.5 49.0 -55.5 -47.3 40.3 30.3 -15.2 52 75 A A H X S+ 0 0 57 -4,-2.2 4,-2.0 2,-0.2 -1,-0.2 0.882 111.8 50.1 -60.3 -42.9 42.6 33.2 -14.1 53 76 A F H X S+ 0 0 22 -4,-2.3 4,-0.8 2,-0.2 -2,-0.2 0.956 112.7 44.9 -62.5 -50.8 44.1 30.9 -11.3 54 77 A L H >X S+ 0 0 58 -4,-2.7 3,-1.0 1,-0.2 4,-0.5 0.918 113.5 50.5 -63.5 -41.6 44.8 28.0 -13.7 55 78 A N H >< S+ 0 0 100 -4,-2.9 3,-1.3 1,-0.2 -1,-0.2 0.883 104.5 59.3 -60.2 -37.4 46.3 30.4 -16.4 56 79 A S H 3< S+ 0 0 79 -4,-2.0 -1,-0.2 1,-0.3 -2,-0.2 0.686 103.3 51.5 -63.3 -22.4 48.5 31.9 -13.6 57 80 A Q H << 0 0 130 -3,-1.0 -1,-0.3 -4,-0.8 -2,-0.2 0.523 360.0 360.0 -95.9 -10.7 50.0 28.5 -13.0 58 81 A K << 0 0 122 -3,-1.3 -1,-0.2 -4,-0.5 -4,-0.0 -0.924 360.0 360.0 120.3 360.0 50.8 28.1 -16.8 59 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 60 18 T Y 0 0 200 0, 0.0 -53,-0.1 0, 0.0 2,-0.0 0.000 360.0 360.0 360.0 139.1 23.1 39.2 -2.9 61 19 T P + 0 0 22 0, 0.0 -55,-0.1 0, 0.0 3,-0.1 -0.340 360.0 175.0 -75.5 146.5 25.6 37.8 -5.4 62 20 T V S S+ 0 0 119 1,-0.2 2,-0.3 -2,-0.0 3,-0.1 0.394 73.0 13.0-116.5 -4.0 24.6 36.7 -8.9 63 21 T K S S+ 0 0 157 1,-0.1 -1,-0.2 3,-0.0 -17,-0.1 -0.934 109.7 41.0-157.7 170.8 28.1 35.9 -10.2 64 22 T K S S+ 0 0 90 -19,-0.5 -55,-2.3 -2,-0.3 2,-0.3 0.936 93.3 123.2 47.2 55.6 31.7 35.3 -8.8 65 23 T K E -AB 8 45A 23 -20,-2.1 -20,-2.6 -57,-0.3 2,-0.3 -0.884 42.5-168.9-143.7 165.4 30.2 33.3 -5.9 66 24 T A E -AB 7 44A 0 -59,-2.0 -59,-2.6 -2,-0.3 -22,-0.2 -0.984 23.9-118.8-156.5 157.6 30.2 30.0 -4.1 67 25 T R E -A 6 0A 111 -24,-2.4 2,-0.4 -2,-0.3 -61,-0.2 -0.534 35.3-118.8 -96.2 145.9 28.3 28.0 -1.4 68 26 T X > - 0 0 18 -65,-0.6 3,-2.1 -63,-0.6 -29,-0.1 -0.916 2.3-142.3 -91.2 132.1 30.1 26.9 1.8 69 27 T S T 3 S+ 0 0 71 -2,-0.4 -1,-0.1 1,-0.3 -30,-0.1 0.869 105.5 70.3 -42.7 -39.1 30.6 23.2 2.9 70 28 T A T 3 0 0 73 -67,-0.1 -1,-0.3 -3,-0.1 -67,-0.2 0.672 360.0 360.0 -55.0 -27.5 30.0 24.8 6.4 71 29 T G < 0 0 59 -3,-2.1 -67,-0.1 -68,-0.5 -69,-0.0 -0.321 360.0 360.0 -84.3 360.0 26.3 25.3 5.4