==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN/RNA 30-JUL-04 1U6P . COMPND 2 MOLECULE: GAG POLYPROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: MOLONEY MURINE LEUKEMIA VIRUS; . AUTHOR V.D'SOUZA,M.F.SUMMERS . 56 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6668.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 10 17.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 3.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 8.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 140 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -59.5 2.1 0.0 -1.2 2 2 A T + 0 0 120 3,-0.0 0, 0.0 0, 0.0 0, 0.0 0.590 360.0 47.6 63.6 136.9 4.7 -2.5 -0.3 3 3 A V + 0 0 140 2,-0.1 3,-0.1 1,-0.0 0, 0.0 0.953 62.6 128.0 64.3 93.1 7.9 -2.9 -2.3 4 4 A V S S- 0 0 128 1,-0.2 2,-0.3 0, 0.0 -1,-0.0 0.477 73.1 -28.6-139.3 -47.4 9.3 0.6 -2.8 5 5 A S + 0 0 106 2,-0.0 2,-0.2 0, 0.0 -1,-0.2 -0.872 63.8 139.2-177.5 144.3 12.9 0.5 -1.7 6 6 A G + 0 0 52 -2,-0.3 0, 0.0 -3,-0.1 0, 0.0 -0.805 10.4 134.6 172.4 146.5 15.2 -1.2 0.8 7 7 A Q - 0 0 151 -2,-0.2 -2,-0.0 2,-0.0 0, 0.0 0.153 30.8-158.3-163.6 -59.2 18.7 -2.7 1.2 8 8 A K + 0 0 204 1,-0.2 2,-0.5 0, 0.0 0, 0.0 0.992 23.0 179.2 57.8 78.0 20.4 -1.7 4.4 9 9 A Q - 0 0 164 2,-0.1 -1,-0.2 0, 0.0 2,-0.1 -0.952 22.5-133.2-116.4 129.1 24.0 -2.3 3.4 10 10 A D + 0 0 153 -2,-0.5 2,-0.1 2,-0.0 0, 0.0 -0.466 35.4 153.7 -77.5 149.6 26.9 -1.7 5.8 11 11 A R + 0 0 234 -2,-0.1 2,-0.3 0, 0.0 -2,-0.1 -0.425 11.3 142.0-179.7 95.9 29.9 0.3 4.5 12 12 A Q + 0 0 170 -2,-0.1 -2,-0.0 1,-0.0 0, 0.0 -0.839 12.1 111.4-135.3 171.5 32.2 2.3 6.8 13 13 A G + 0 0 67 -2,-0.3 -1,-0.0 1,-0.1 2,-0.0 0.522 18.1 153.8 121.5 89.6 35.9 3.1 7.1 14 14 A G + 0 0 81 2,-0.0 2,-0.7 0, 0.0 -1,-0.1 -0.475 15.1 148.6-141.1 65.1 37.2 6.6 6.4 15 15 A E + 0 0 162 2,-0.0 2,-0.3 -2,-0.0 0, 0.0 -0.892 18.4 139.0-106.5 107.9 40.4 7.1 8.4 16 16 A R - 0 0 191 -2,-0.7 2,-0.3 2,-0.0 -2,-0.0 -0.995 27.9-162.7-149.1 145.7 42.9 9.4 6.7 17 17 A R - 0 0 165 -2,-0.3 2,-0.5 3,-0.0 -2,-0.0 -0.818 23.2-128.8-125.8 165.4 45.2 12.2 7.8 18 18 A R S > S- 0 0 164 -2,-0.3 3,-1.2 3,-0.1 4,-0.1 -0.603 77.0 -65.1-114.8 68.3 47.1 15.0 6.0 19 19 A S T 3 S- 0 0 86 -2,-0.5 3,-0.1 1,-0.3 -1,-0.0 0.854 95.9 -62.3 54.9 37.3 50.6 14.5 7.3 20 20 A Q T 3 S- 0 0 159 1,-0.1 -1,-0.3 2,-0.0 -3,-0.0 0.846 79.6-158.3 57.2 35.9 49.3 15.4 10.7 21 21 A L < - 0 0 65 -3,-1.2 2,-0.3 1,-0.1 -1,-0.1 -0.070 3.6-146.7 -44.6 143.5 48.3 18.8 9.4 22 22 A D > - 0 0 99 -3,-0.1 3,-2.1 -4,-0.1 -1,-0.1 -0.852 23.7-119.5-118.6 154.5 48.0 21.4 12.1 23 23 A R T 3 S+ 0 0 210 -2,-0.3 -2,-0.1 1,-0.3 -1,-0.0 0.520 122.0 39.1 -67.4 -3.9 45.7 24.4 12.4 24 24 A D T 3 S+ 0 0 97 2,-0.1 9,-1.8 11,-0.0 -1,-0.3 -0.056 103.6 93.2-134.4 29.2 48.9 26.3 12.5 25 25 A Q B < S-A 32 0A 39 -3,-2.1 2,-0.5 7,-0.2 11,-0.4 -0.749 73.9-111.1-120.6 168.3 50.9 24.4 10.0 26 26 A C - 0 0 0 5,-1.3 4,-0.4 -2,-0.3 9,-0.1 -0.867 10.0-156.0-103.7 132.6 51.5 24.7 6.2 27 27 A A S S+ 0 0 50 -2,-0.5 -1,-0.1 2,-0.1 8,-0.1 -0.071 92.2 46.5 -94.8 31.7 50.1 22.1 3.9 28 28 A Y S S+ 0 0 122 3,-0.1 -1,-0.1 14,-0.0 8,-0.0 0.551 128.8 12.3-132.6 -58.2 52.8 22.9 1.4 29 29 A C S S- 0 0 24 2,-0.1 -2,-0.1 0, 0.0 3,-0.1 0.508 95.6-123.1-102.2 -11.4 56.2 23.1 3.0 30 30 A K + 0 0 86 -4,-0.4 2,-0.3 1,-0.3 -3,-0.1 0.736 60.0 153.1 73.6 23.5 55.0 21.5 6.2 31 31 A E - 0 0 78 -6,-0.1 -5,-1.3 1,-0.0 2,-0.5 -0.670 42.7-131.3 -89.0 141.0 56.2 24.6 8.0 32 32 A K B S+A 25 0A 171 -2,-0.3 -7,-0.2 -7,-0.2 3,-0.1 -0.810 84.1 45.7 -95.2 127.0 54.6 25.7 11.2 33 33 A G S S+ 0 0 52 -9,-1.8 2,-0.2 1,-0.5 -1,-0.2 -0.254 105.0 47.8 140.9 -47.8 53.6 29.3 11.5 34 34 A H S S- 0 0 35 -3,-0.3 -1,-0.5 -10,-0.1 2,-0.2 -0.608 77.5-113.9-115.6 176.6 51.9 30.1 8.2 35 35 A W > - 0 0 119 -2,-0.2 3,-1.9 -9,-0.1 -9,-0.2 -0.670 29.2-108.7-108.9 165.4 49.2 28.5 6.1 36 36 A A G > S+ 0 0 14 -11,-0.4 3,-1.9 1,-0.3 6,-0.2 0.880 123.8 55.7 -58.7 -39.7 49.5 26.9 2.7 37 37 A K G 3 S+ 0 0 163 1,-0.3 -1,-0.3 3,-0.0 -11,-0.0 0.498 115.2 40.8 -71.1 -2.7 47.5 29.8 1.3 38 38 A D G < S+ 0 0 122 -3,-1.9 -1,-0.3 0, 0.0 -2,-0.2 0.057 83.6 142.4-130.2 20.1 50.3 31.9 2.9 39 39 A C X - 0 0 7 -3,-1.9 3,-1.2 1,-0.1 -3,-0.1 -0.469 50.3-142.6 -67.7 132.6 53.2 29.6 1.9 40 40 A P T 3 S+ 0 0 102 0, 0.0 -1,-0.1 0, 0.0 -4,-0.1 0.434 100.0 66.5 -75.0 1.0 56.3 31.7 1.0 41 41 A K T 3 + 0 0 108 -5,-0.1 -5,-0.0 2,-0.1 -2,-0.0 0.673 67.3 118.1 -92.1 -22.4 56.9 29.1 -1.7 42 42 A K < - 0 0 111 -3,-1.2 2,-0.0 -6,-0.2 -14,-0.0 -0.283 60.8-145.4 -50.5 106.5 53.8 30.1 -3.6 43 43 A P + 0 0 105 0, 0.0 2,-0.3 0, 0.0 -2,-0.1 -0.293 29.0 156.9 -75.0 162.1 55.3 31.2 -6.9 44 44 A R - 0 0 232 2,-0.2 0, 0.0 -2,-0.0 0, 0.0 -0.859 26.6 -49.7 178.4 147.4 53.9 34.0 -9.0 45 45 A G S S+ 0 0 49 -2,-0.3 2,-0.2 2,-0.0 3,-0.0 -0.008 77.8 73.3 -60.1 170.9 54.9 36.5 -11.6 46 46 A P S S- 0 0 111 0, 0.0 -2,-0.2 0, 0.0 2,-0.0 0.635 81.5-112.1 -75.0-174.4 56.5 38.5 -12.7 47 47 A R - 0 0 181 -2,-0.2 3,-0.1 1,-0.1 -2,-0.0 -0.302 20.0-134.4 -75.9 162.9 59.5 36.4 -13.8 48 48 A G S S+ 0 0 67 1,-0.1 -1,-0.1 -2,-0.0 -3,-0.0 0.809 70.6 5.7 -81.3-105.6 62.9 36.7 -12.1 49 49 A P - 0 0 127 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.136 68.3-136.1 -75.1 175.2 65.9 36.8 -14.4 50 50 A R - 0 0 182 -3,-0.1 2,-0.0 2,-0.0 0, 0.0 -0.991 9.6-134.9-141.3 129.2 65.9 37.0 -18.2 51 51 A P + 0 0 120 0, 0.0 2,-0.2 0, 0.0 0, 0.0 -0.216 24.8 173.7 -75.0 168.9 68.0 35.2 -20.8 52 52 A Q - 0 0 183 2,-0.0 2,-0.3 -2,-0.0 -2,-0.0 -0.747 6.4-176.4-179.0 128.2 69.6 36.7 -23.8 53 53 A T - 0 0 116 -2,-0.2 2,-0.3 3,-0.0 3,-0.1 -0.792 8.7-161.8-126.8 169.3 72.0 35.6 -26.5 54 54 A S - 0 0 100 1,-0.3 -2,-0.0 -2,-0.3 0, 0.0 -0.798 65.9 -18.5-158.1 109.1 73.8 37.1 -29.4 55 55 A L 0 0 178 -2,-0.3 -1,-0.3 1,-0.2 0, 0.0 0.852 360.0 360.0 58.4 110.6 75.3 35.2 -32.3 56 56 A L 0 0 206 -3,-0.1 -1,-0.2 0, 0.0 -3,-0.0 -0.916 360.0 360.0-167.4 360.0 75.8 31.6 -31.5