==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER CHROMOSOMAL PROTEIN 03-FEB-94 1UBI . COMPND 2 MOLECULE: UBIQUITIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR D.ALEXEEV,S.M.BURY,M.A.TURNER,O.M.OGUNJOBI,T.W.MUIR, . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4929.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 73.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 6.6 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 21.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 13.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 14.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 53 0, 0.0 16,-3.5 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 153.6 26.4 25.4 2.9 2 2 A Q E +A 16 0A 78 14,-0.2 62,-3.0 12,-0.0 63,-0.3 -0.730 360.0 177.2 -93.1 132.6 26.9 28.9 3.9 3 3 A I E -A 15 0A 0 12,-2.3 12,-2.4 -2,-0.4 2,-0.5 -0.907 22.3-128.1-129.9 159.8 26.3 30.1 7.5 4 4 A F E -Ab 14 66A 55 61,-3.1 63,-3.4 -2,-0.3 2,-0.6 -0.927 9.9-160.9-111.9 134.7 26.7 33.4 9.3 5 5 A V E -Ab 13 67A 0 8,-3.3 8,-3.0 -2,-0.5 2,-0.5 -0.934 11.8-159.4-115.5 106.6 28.7 34.0 12.4 6 6 A K E -Ab 12 68A 104 61,-2.9 63,-3.1 -2,-0.6 6,-0.2 -0.759 8.1-160.5 -89.5 121.5 27.7 37.2 14.2 7 7 A T E > - b 0 69A 26 4,-2.6 3,-1.2 -2,-0.5 63,-0.1 -0.499 31.8-107.2 -95.1 170.6 30.2 38.6 16.7 8 8 A L T 3 S+ 0 0 136 61,-0.5 62,-0.1 1,-0.2 -1,-0.1 0.593 112.9 63.8 -73.0 -11.5 29.7 41.1 19.5 9 9 A T T 3 S- 0 0 122 2,-0.2 -1,-0.2 0, 0.0 3,-0.1 0.383 119.9 -99.7 -95.4 4.1 31.4 43.9 17.5 10 10 A G S < S+ 0 0 69 -3,-1.2 2,-0.5 1,-0.3 -2,-0.1 0.644 83.3 129.5 87.7 14.4 28.9 44.1 14.7 11 11 A K - 0 0 97 -4,-0.0 -4,-2.6 2,-0.0 2,-0.5 -0.883 41.7-159.6-102.5 131.6 31.1 42.0 12.4 12 12 A T E -A 6 0A 66 -2,-0.5 2,-0.4 -6,-0.2 -6,-0.2 -0.952 3.6-158.5-112.8 128.1 29.6 39.0 10.6 13 13 A I E -A 5 0A 3 -8,-3.0 -8,-3.3 -2,-0.5 2,-0.4 -0.874 8.5-141.4-107.9 136.6 31.7 36.3 9.3 14 14 A T E -A 4 0A 60 -2,-0.4 2,-0.4 -10,-0.2 -10,-0.2 -0.802 20.1-172.5 -96.4 138.3 30.6 33.9 6.5 15 15 A L E -A 3 0A 8 -12,-2.4 -12,-2.3 -2,-0.4 2,-0.6 -0.964 22.0-138.4-128.6 149.1 31.6 30.3 6.7 16 16 A E E +A 2 0A 150 -2,-0.4 2,-0.3 -14,-0.2 -14,-0.2 -0.925 42.9 152.4-108.2 114.4 31.3 27.4 4.3 17 17 A V - 0 0 2 -16,-3.5 -2,-0.0 -2,-0.6 9,-0.0 -0.904 40.1-128.9-136.9 167.8 30.3 24.2 6.2 18 18 A E > - 0 0 112 -2,-0.3 3,-2.9 4,-0.1 38,-0.3 -0.927 28.6-122.7-116.6 142.2 28.5 20.9 6.0 19 19 A P T 3 S+ 0 0 47 0, 0.0 38,-2.4 0, 0.0 39,-0.3 0.722 112.9 64.4 -55.6 -18.0 25.8 19.8 8.5 20 20 A S T 3 S+ 0 0 88 36,-0.2 2,-0.2 35,-0.1 -3,-0.0 0.505 80.7 109.0 -83.6 -4.8 28.1 16.8 9.2 21 21 A D < - 0 0 38 -3,-2.9 35,-2.0 1,-0.1 36,-0.2 -0.475 69.3-124.3 -74.2 143.7 30.7 19.1 10.5 22 22 A T B > -E 55 0B 46 33,-0.2 4,-1.7 -2,-0.2 33,-0.3 -0.415 17.9-117.3 -82.1 161.6 31.4 19.1 14.2 23 23 A I H > S+ 0 0 0 31,-2.6 4,-2.2 29,-0.5 29,-0.2 0.873 117.5 58.1 -63.9 -37.8 31.3 22.2 16.4 24 24 A E H > S+ 0 0 133 28,-2.1 4,-1.2 30,-0.3 -1,-0.2 0.874 106.5 49.0 -57.0 -40.2 35.0 21.7 17.1 25 25 A N H > S+ 0 0 55 27,-0.3 4,-1.8 2,-0.2 -1,-0.2 0.857 107.9 53.1 -70.9 -37.9 35.6 21.9 13.3 26 26 A V H X S+ 0 0 0 -4,-1.7 4,-2.2 1,-0.2 -2,-0.2 0.911 107.2 52.1 -62.5 -43.3 33.6 25.1 13.0 27 27 A K H X S+ 0 0 14 -4,-2.2 4,-1.9 1,-0.2 -1,-0.2 0.838 107.8 52.4 -62.0 -34.1 35.6 26.7 15.7 28 28 A A H X S+ 0 0 43 -4,-1.2 4,-2.6 2,-0.2 -1,-0.2 0.867 107.2 52.4 -68.6 -37.5 38.8 25.8 13.9 29 29 A K H X S+ 0 0 68 -4,-1.8 4,-1.9 2,-0.2 -2,-0.2 0.897 108.7 49.8 -63.9 -42.3 37.4 27.4 10.8 30 30 A I H X>S+ 0 0 0 -4,-2.2 4,-3.1 2,-0.2 5,-0.6 0.887 111.2 49.4 -64.0 -40.1 36.7 30.6 12.7 31 31 A Q H X5S+ 0 0 88 -4,-1.9 4,-1.8 1,-0.2 -2,-0.2 0.930 109.2 52.6 -64.5 -43.7 40.2 30.5 14.1 32 32 A D H <5S+ 0 0 149 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.867 119.7 33.6 -58.9 -38.8 41.6 30.0 10.7 33 33 A K H <5S+ 0 0 106 -4,-1.9 -2,-0.2 -5,-0.1 -1,-0.2 0.800 134.9 19.1 -94.2 -28.2 39.8 33.0 9.3 34 34 A E H <5S- 0 0 76 -4,-3.1 -3,-0.2 -5,-0.2 -2,-0.2 0.494 95.6-120.8-119.1 -11.0 39.6 35.5 12.1 35 35 A G << + 0 0 50 -4,-1.8 -4,-0.2 -5,-0.6 -3,-0.1 0.491 59.3 147.3 84.1 5.8 42.4 34.3 14.4 36 36 A I - 0 0 31 -6,-0.6 -1,-0.2 1,-0.1 -2,-0.1 -0.640 51.1-121.5 -79.4 119.2 40.2 33.7 17.4 37 37 A P > - 0 0 45 0, 0.0 3,-1.8 0, 0.0 4,-0.5 -0.321 16.7-127.2 -59.4 136.5 41.4 30.8 19.5 38 38 A P G > S+ 0 0 44 0, 0.0 3,-1.4 0, 0.0 -10,-0.1 0.823 106.0 64.4 -56.2 -34.9 38.8 28.1 19.9 39 39 A D G 3 S+ 0 0 87 1,-0.3 -3,-0.0 3,-0.0 -12,-0.0 0.711 102.3 50.4 -64.4 -18.4 39.0 28.0 23.7 40 40 A Q G < S+ 0 0 52 -3,-1.8 32,-2.8 31,-0.1 2,-0.4 0.561 93.2 103.5 -92.3 -10.5 37.7 31.6 23.7 41 41 A Q E < +C 71 0A 0 -3,-1.4 2,-0.5 -4,-0.5 30,-0.2 -0.623 42.2 177.5 -84.8 130.1 34.8 30.7 21.5 42 42 A R E -C 70 0A 90 28,-1.8 28,-2.9 -2,-0.4 2,-0.5 -0.980 15.8-158.7-128.4 107.6 31.2 30.3 22.7 43 43 A L E -C 69 0A 0 -2,-0.5 7,-2.9 7,-0.4 2,-0.4 -0.829 6.5-167.3 -96.1 131.1 28.7 29.6 19.9 44 44 A I E +CD 68 49A 32 24,-2.7 24,-2.9 -2,-0.5 2,-0.4 -0.966 12.9 165.4-122.6 130.9 25.0 30.2 20.4 45 45 A F E > S- D 0 48A 38 3,-2.3 3,-1.9 -2,-0.4 22,-0.1 -0.986 72.3 -10.4-143.6 128.5 22.1 29.1 18.2 46 46 A A T 3 S- 0 0 64 -2,-0.4 3,-0.1 1,-0.3 -1,-0.1 0.892 128.9 -53.8 50.8 44.0 18.5 29.1 19.1 47 47 A G T 3 S+ 0 0 78 1,-0.2 2,-0.4 -3,-0.0 -1,-0.3 0.551 115.3 117.4 71.2 9.7 19.2 29.9 22.7 48 48 A K E < -D 45 0A 96 -3,-1.9 -3,-2.3 11,-0.1 2,-0.5 -0.897 64.9-131.8-112.7 140.0 21.6 26.9 23.0 49 49 A Q E -D 44 0A 103 -2,-0.4 2,-0.3 -5,-0.2 -5,-0.2 -0.740 34.7-124.6 -84.6 122.2 25.3 26.8 23.7 50 50 A L - 0 0 4 -7,-2.9 2,-0.4 -2,-0.5 -7,-0.4 -0.542 17.5-137.0 -75.3 133.8 26.8 24.5 21.1 51 51 A E > - 0 0 127 -2,-0.3 3,-1.7 4,-0.1 -28,-0.5 -0.773 12.2-129.2 -95.6 133.4 28.9 21.6 22.2 52 52 A D T 3 S+ 0 0 67 -2,-0.4 -28,-2.1 1,-0.3 -29,-0.5 0.767 104.1 51.5 -45.2 -45.7 32.3 20.7 20.5 53 53 A G T 3 S+ 0 0 48 -30,-0.2 -1,-0.3 -31,-0.1 2,-0.1 0.623 95.6 85.3 -75.4 -17.0 31.5 17.0 20.0 54 54 A R S < S- 0 0 116 -3,-1.7 -31,-2.6 -32,-0.1 -30,-0.3 -0.428 73.4-126.8 -82.6 164.2 28.2 17.6 18.3 55 55 A T B >> -E 22 0B 26 -33,-0.3 4,-0.6 -2,-0.1 3,-0.5 -0.631 24.8-109.8-103.4 166.0 27.5 18.3 14.6 56 56 A L G >4>S+ 0 0 0 -35,-2.0 5,-2.0 -38,-0.3 3,-0.8 0.839 118.7 59.4 -62.3 -32.9 25.6 21.1 13.1 57 57 A S G >45S+ 0 0 65 -38,-2.4 3,-1.4 -36,-0.2 -1,-0.2 0.824 93.4 65.0 -66.1 -31.4 22.9 18.6 12.1 58 58 A D G <45S+ 0 0 92 -3,-0.5 -1,-0.2 -39,-0.3 -2,-0.2 0.804 107.8 42.2 -57.7 -32.6 22.4 17.6 15.7 59 59 A Y G <<5S- 0 0 41 -3,-0.8 -1,-0.3 -4,-0.6 -2,-0.2 0.359 113.2-118.4 -96.8 -0.2 21.1 21.2 16.2 60 60 A N T < 5 + 0 0 116 -3,-1.4 2,-0.6 1,-0.2 -3,-0.2 0.859 47.7 173.9 63.4 35.8 19.1 21.3 13.0 61 61 A I < - 0 0 5 -5,-2.0 -1,-0.2 -42,-0.1 2,-0.2 -0.672 12.1-165.5 -77.3 112.6 21.2 24.2 11.7 62 62 A Q > - 0 0 126 -2,-0.6 3,-1.4 1,-0.2 -1,-0.0 -0.508 32.6 -64.0 -99.3 169.7 20.1 24.8 8.1 63 63 A K T 3 S+ 0 0 139 1,-0.2 -1,-0.2 -2,-0.2 -60,-0.2 -0.173 119.4 18.3 -53.7 139.5 21.6 26.8 5.2 64 64 A E T 3 S+ 0 0 112 -62,-3.0 -1,-0.2 1,-0.2 -61,-0.2 0.598 89.2 150.6 72.7 18.0 21.9 30.6 5.8 65 65 A S < - 0 0 21 -3,-1.4 -61,-3.1 -63,-0.3 2,-0.5 -0.351 41.2-130.7 -74.2 157.1 21.5 30.3 9.6 66 66 A T E -b 4 0A 57 -63,-0.2 2,-0.3 -2,-0.1 -61,-0.2 -0.955 17.3-165.4-116.9 122.3 23.2 32.7 11.9 67 67 A L E -b 5 0A 0 -63,-3.4 -61,-2.9 -2,-0.5 2,-0.5 -0.770 18.0-130.6 -97.9 150.7 25.3 31.6 14.9 68 68 A H E -bC 6 44A 85 -24,-2.9 -24,-2.7 -2,-0.3 2,-0.6 -0.889 14.7-152.6-104.8 129.2 26.2 34.0 17.7 69 69 A L E -bC 7 43A 4 -63,-3.1 -61,-0.5 -2,-0.5 2,-0.4 -0.899 13.9-179.5-105.2 116.9 29.8 34.2 18.8 70 70 A V E - C 0 42A 31 -28,-2.9 -28,-1.8 -2,-0.6 2,-0.4 -0.938 21.3-133.7-113.1 133.6 30.5 35.3 22.3 71 71 A L E - C 0 41A 81 -2,-0.4 2,-0.6 -30,-0.2 -30,-0.2 -0.736 13.4-166.3 -92.2 138.0 34.1 35.5 23.6 72 72 A R - 0 0 107 -32,-2.8 2,-0.2 -2,-0.4 -2,-0.0 -0.892 13.0-161.8-122.6 96.9 35.3 34.1 26.8 73 73 A L - 0 0 119 -2,-0.6 2,-1.0 1,-0.1 -33,-0.0 -0.535 18.3-128.8 -81.2 147.2 38.6 35.5 27.7 74 74 A R S S+ 0 0 211 -2,-0.2 -1,-0.1 1,-0.1 -34,-0.0 -0.806 80.1 27.5 -99.1 93.9 40.9 33.8 30.3 75 75 A G 0 0 75 -2,-1.0 -1,-0.1 1,-0.1 -2,-0.0 0.202 360.0 360.0 120.4 125.6 41.8 36.5 32.7 76 76 A G 0 0 152 -2,-0.0 -1,-0.1 -3,-0.0 -3,-0.0 0.127 360.0 360.0 174.2 360.0 40.4 39.8 33.9