==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTIFREEZE PROTEIN 21-APR-03 1UCS . COMPND 2 MOLECULE: ANTIFREEZE PEPTIDE RD1; . SOURCE 2 ORGANISM_SCIENTIFIC: LYCODICHTHYS DEARBORNI; . AUTHOR T.-P.KO,H.ROBINSON,Y.-G.GAO,C.-H.C.CHENG,A.L.DEVRIES,A.H.- . 64 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3746.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 36 56.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 23.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 4.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 18.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 5 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A N 0 0 131 0, 0.0 2,-0.3 0, 0.0 25,-0.1 0.000 360.0 360.0 360.0 160.5 12.4 -3.9 28.5 2 2 A K - 0 0 126 25,-0.2 25,-0.4 23,-0.1 23,-0.1 -0.978 360.0 -87.1-135.6 159.6 12.0 -4.0 24.8 3 3 A A - 0 0 27 -2,-0.3 31,-2.6 23,-0.2 32,-0.3 -0.323 39.2-156.7 -71.7 145.5 13.8 -1.9 22.1 4 4 A S E -AB 25 33A 0 21,-2.9 21,-2.2 29,-0.3 2,-0.4 -0.758 29.8 -91.3-110.4 163.6 12.6 1.5 21.0 5 5 A V E -A 24 0A 1 27,-2.5 50,-2.6 50,-0.3 2,-0.4 -0.602 47.7-177.0 -72.0 130.3 13.1 3.5 17.9 6 6 A V E -AC 23 54A 0 17,-2.6 17,-2.7 -2,-0.4 2,-0.2 -0.983 32.7-103.3-131.8 139.3 16.2 5.8 18.3 7 7 A A E -A 22 0A 2 46,-2.7 45,-2.7 -2,-0.4 15,-0.2 -0.445 23.1-164.7 -65.9 128.9 17.5 8.3 15.8 8 8 A N S S+ 0 0 70 13,-2.7 2,-0.3 -2,-0.2 14,-0.2 0.432 78.0 4.4 -91.4 -2.4 20.5 7.1 13.9 9 9 A Q S S- 0 0 73 12,-0.5 2,-0.2 40,-0.2 -1,-0.1 -0.920 104.3 -66.4-163.1 166.4 21.4 10.6 12.7 10 10 A L - 0 0 87 -2,-0.3 38,-0.0 40,-0.1 -2,-0.0 -0.494 48.2-154.8 -58.8 130.4 20.0 14.1 13.3 11 11 A I B -D 49 0B 2 38,-2.4 38,-2.7 -2,-0.2 3,-0.1 -0.953 16.7-133.3-110.2 111.2 16.5 14.1 11.8 12 12 A P > - 0 0 59 0, 0.0 3,-2.2 0, 0.0 33,-0.3 -0.266 32.8 -82.6 -66.0 156.2 15.6 17.8 10.9 13 13 A I T 3 S+ 0 0 97 1,-0.3 33,-0.2 33,-0.1 35,-0.1 -0.242 116.5 13.8 -51.9 135.5 12.2 19.3 11.7 14 14 A N T 3 S+ 0 0 83 31,-1.8 -1,-0.3 1,-0.2 2,-0.2 0.443 91.2 144.3 73.0 8.5 9.6 18.3 9.2 15 15 A T < - 0 0 40 -3,-2.2 30,-1.9 32,-0.1 2,-0.4 -0.531 52.2-123.6 -79.7 139.8 11.7 15.5 7.6 16 16 A A B -E 44 0C 43 28,-0.2 28,-0.3 -2,-0.2 27,-0.1 -0.658 36.6-110.7 -77.5 129.6 10.0 12.4 6.4 17 17 A L - 0 0 1 26,-3.1 25,-2.7 -2,-0.4 2,-0.3 -0.335 35.9-174.1 -67.2 139.0 11.5 9.3 8.1 18 18 A T > - 0 0 60 23,-0.2 3,-1.5 24,-0.1 4,-0.3 -0.859 39.0-103.6-123.9 167.0 13.6 6.9 6.1 19 19 A L G > S+ 0 0 111 -2,-0.3 3,-1.7 1,-0.3 -1,-0.0 0.847 116.2 60.9 -62.3 -35.7 15.1 3.6 7.2 20 20 A I G 3 S+ 0 0 112 1,-0.3 -1,-0.3 -13,-0.0 3,-0.0 0.734 100.2 59.1 -64.4 -18.6 18.6 4.9 7.6 21 21 A M G < S+ 0 0 20 -3,-1.5 -13,-2.7 1,-0.1 2,-0.6 0.561 95.3 71.1 -82.5 -12.1 17.3 7.3 10.2 22 22 A M E < +A 7 0A 15 -3,-1.7 -15,-0.2 -4,-0.3 2,-0.2 -0.891 50.9 169.2-123.9 105.4 16.0 4.7 12.6 23 23 A K E -A 6 0A 69 -17,-2.7 -17,-2.6 -2,-0.6 2,-0.4 -0.489 28.4-128.9 -97.0 175.0 18.0 2.4 14.8 24 24 A A E +A 5 0A 54 -19,-0.2 2,-0.3 -2,-0.2 -19,-0.2 -0.992 34.3 157.7-132.6 125.8 16.6 0.2 17.5 25 25 A E E -A 4 0A 84 -21,-2.2 -21,-2.9 -2,-0.4 2,-0.7 -0.994 46.9-106.8-147.4 152.3 18.0 0.1 21.1 26 26 A V + 0 0 98 -2,-0.3 2,-0.3 -23,-0.3 -23,-0.2 -0.701 59.3 153.3 -80.8 113.3 16.9 -0.8 24.6 27 27 A V - 0 0 31 -2,-0.7 -25,-0.2 -25,-0.4 4,-0.1 -0.873 38.4 -93.7-136.0 166.0 16.6 2.6 26.3 28 28 A T S S+ 0 0 119 -2,-0.3 2,-0.2 2,-0.1 26,-0.1 -0.999 99.2 35.8-136.0 136.4 14.8 4.3 29.1 29 29 A P S S- 0 0 97 0, 0.0 2,-0.2 0, 0.0 -2,-0.1 0.577 101.8-109.8 -69.5 172.9 12.3 5.8 29.1 30 30 A M - 0 0 76 -2,-0.2 2,-0.1 1,-0.1 -2,-0.1 -0.466 36.9-172.7 -74.0 136.9 10.5 3.7 26.4 31 31 A G - 0 0 7 1,-0.3 25,-0.2 -2,-0.2 -25,-0.1 -0.264 50.7 -37.7-105.5-161.1 9.8 5.2 23.0 32 32 A I S S- 0 0 0 23,-2.9 -27,-2.5 -27,-0.2 -1,-0.3 -0.434 81.1 -98.9 -56.0 133.7 7.9 4.0 20.0 33 33 A P B > -B 4 0A 52 0, 0.0 3,-2.4 0, 0.0 -29,-0.3 -0.284 26.6-121.0 -60.3 144.3 8.5 0.2 19.9 34 34 A A G > S+ 0 0 19 -31,-2.6 3,-2.1 1,-0.3 -30,-0.1 0.753 106.7 71.6 -57.2 -30.9 11.1 -0.9 17.4 35 35 A E G 3 S+ 0 0 110 -32,-0.3 -1,-0.3 1,-0.3 4,-0.3 0.696 88.4 65.7 -60.0 -20.0 8.7 -3.1 15.5 36 36 A E G X> S+ 0 0 44 -3,-2.4 4,-1.6 1,-0.2 3,-0.9 0.571 71.0 100.1 -77.6 -9.1 7.1 0.1 14.2 37 37 A I H X> S+ 0 0 23 -3,-2.1 4,-0.9 1,-0.3 3,-0.7 0.875 81.8 46.0 -46.4 -52.5 10.1 1.2 12.2 38 38 A P H 34 S+ 0 0 93 0, 0.0 3,-0.3 0, 0.0 -1,-0.3 0.840 113.8 50.8 -65.6 -27.2 8.9 0.0 8.8 39 39 A K H <4 S+ 0 0 144 -3,-0.9 -2,-0.2 -4,-0.3 -3,-0.1 0.698 103.5 59.7 -77.3 -24.3 5.5 1.6 9.4 40 40 A L H X< S+ 0 0 1 -4,-1.6 3,-2.5 -3,-0.7 -23,-0.4 0.703 76.7 114.9 -75.4 -22.3 7.1 5.0 10.4 41 41 A V T 3< S+ 0 0 64 -4,-0.9 -23,-0.2 -3,-0.3 3,-0.1 -0.299 82.2 18.3 -55.1 130.8 8.8 5.3 7.0 42 42 A G T 3 S+ 0 0 50 -25,-2.7 -1,-0.3 1,-0.3 2,-0.2 0.110 95.5 118.1 96.1 -20.4 7.4 8.3 5.3 43 43 A M < - 0 0 46 -3,-2.5 -26,-3.1 -27,-0.1 -1,-0.3 -0.557 61.2-125.8 -80.4 145.2 5.9 9.9 8.4 44 44 A Q B -E 16 0C 77 -28,-0.3 17,-3.0 -2,-0.2 2,-0.3 -0.644 9.6-129.1 -92.5 147.7 7.3 13.4 9.3 45 45 A V B -F 60 0D 0 -30,-1.9 -31,-1.8 -33,-0.3 15,-0.2 -0.689 8.3-147.1 -86.8 147.5 8.8 14.5 12.6 46 46 A N S S+ 0 0 61 13,-2.5 2,-0.3 -2,-0.3 14,-0.1 0.381 80.9 22.2 -96.6 6.9 7.3 17.7 14.1 47 47 A R S S- 0 0 94 12,-0.4 2,-0.1 -35,-0.1 -33,-0.1 -0.955 99.0 -78.5-159.9 160.4 10.6 18.7 15.7 48 48 A A - 0 0 50 -2,-0.3 -2,-0.1 -35,-0.1 -38,-0.1 -0.455 39.0-154.4 -66.8 142.8 14.3 18.1 15.2 49 49 A V B -D 11 0B 2 -38,-2.7 -38,-2.4 -2,-0.1 -40,-0.2 -0.917 13.4-142.6-121.8 99.6 15.3 14.7 16.6 50 50 A P > - 0 0 70 0, 0.0 3,-2.3 0, 0.0 -43,-0.3 -0.240 36.3 -79.7 -60.5 154.2 19.1 14.7 17.5 51 51 A L T 3 S+ 0 0 109 1,-0.3 -43,-0.2 -43,-0.1 -41,-0.1 -0.216 119.9 21.2 -47.2 133.7 21.2 11.6 17.0 52 52 A G T 3 S+ 0 0 41 -45,-2.7 2,-0.3 1,-0.3 -1,-0.3 0.395 90.0 134.7 84.9 -3.1 20.6 9.1 19.8 53 53 A T < - 0 0 43 -3,-2.3 -46,-2.7 1,-0.1 2,-0.4 -0.617 59.6-119.0 -80.5 137.6 17.3 10.6 20.8 54 54 A T B -C 6 0A 22 -2,-0.3 2,-0.5 -48,-0.2 -48,-0.3 -0.594 27.9-125.4 -74.7 128.9 14.5 8.1 21.5 55 55 A L - 0 0 3 -50,-2.6 -23,-2.9 -2,-0.4 -50,-0.3 -0.672 30.4-166.3 -81.0 124.7 11.6 8.7 19.1 56 56 A M > - 0 0 38 -2,-0.5 3,-1.9 -25,-0.2 4,-0.3 -0.740 32.4-110.4-110.6 157.4 8.3 9.2 21.0 57 57 A P G > S+ 0 0 64 0, 0.0 3,-1.4 0, 0.0 6,-0.3 0.834 115.6 59.3 -55.8 -35.8 4.7 9.2 19.7 58 58 A D G 3 S+ 0 0 101 1,-0.2 -12,-0.0 3,-0.0 -3,-0.0 0.692 97.8 60.8 -69.7 -15.1 4.3 13.0 20.2 59 59 A M G < S+ 0 0 22 -3,-1.9 -13,-2.5 -14,-0.1 2,-0.5 0.468 91.7 78.4 -85.8 -10.0 7.3 13.7 17.9 60 60 A V B X S-F 45 0D 6 -3,-1.4 3,-1.5 -4,-0.3 -15,-0.2 -0.912 81.9-123.8-112.0 124.6 5.6 12.1 14.8 61 61 A K T 3 S+ 0 0 65 -17,-3.0 -17,-0.2 -2,-0.5 -2,-0.1 -0.414 92.8 2.6 -64.2 137.1 3.0 13.9 12.8 62 62 A N T 3 S+ 0 0 154 1,-0.2 2,-0.4 -2,-0.1 -1,-0.2 0.615 93.2 150.7 65.8 15.5 -0.3 11.9 12.5 63 63 A Y < 0 0 49 -3,-1.5 -1,-0.2 -6,-0.3 -3,-0.1 -0.683 360.0 360.0 -86.4 131.3 1.0 9.1 14.7 64 64 A E 0 0 234 -2,-0.4 -1,-0.2 -6,-0.0 -2,-0.0 0.582 360.0 360.0-127.0 360.0 -1.5 7.0 16.8