==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-AUG-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 26-OCT-11 3UCG . COMPND 2 MOLECULE: POLYADENYLATE-BINDING PROTEIN 2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG),PARTNERSHIP FOR . 88 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5339.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 70.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 23 26.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 9.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 16 18.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 13 14.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 0 A G > 0 0 80 0, 0.0 4,-2.8 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0-176.2 94.0 91.0 54.0 2 167 A X H > + 0 0 136 1,-0.2 4,-1.7 2,-0.2 5,-0.1 0.819 360.0 50.2 -55.6 -34.6 97.5 92.1 55.0 3 168 A E H > S+ 0 0 112 2,-0.2 4,-0.8 1,-0.2 -1,-0.2 0.909 112.2 45.9 -71.9 -42.8 97.1 90.7 58.6 4 169 A A H >4 S+ 0 0 16 1,-0.2 3,-0.6 2,-0.2 -2,-0.2 0.898 113.0 52.8 -60.0 -39.6 95.9 87.3 57.3 5 170 A D H >< S+ 0 0 40 -4,-2.8 3,-1.5 1,-0.2 78,-0.5 0.851 101.8 57.8 -67.3 -36.3 98.8 87.4 54.8 6 171 A A H 3< S+ 0 0 30 -4,-1.7 -1,-0.2 1,-0.3 -2,-0.2 0.692 108.7 47.6 -64.0 -23.7 101.3 88.1 57.6 7 172 A R T << S+ 0 0 41 -4,-0.8 48,-3.0 -3,-0.6 2,-0.3 0.263 105.1 88.2 -98.7 11.2 100.1 84.8 59.2 8 173 A S E < -A 54 0A 4 -3,-1.5 74,-2.1 46,-0.3 75,-0.4 -0.767 57.1-154.9-117.7 151.4 100.4 83.0 55.8 9 174 A I E -AB 53 81A 0 44,-1.8 44,-2.1 72,-0.3 2,-0.5 -0.911 17.3-131.0-116.6 150.5 103.0 81.0 53.8 10 175 A Y E -AB 52 80A 63 70,-3.1 70,-2.1 -2,-0.3 2,-0.5 -0.866 21.0-161.3 -91.8 135.3 103.3 80.4 50.1 11 176 A V E -AB 51 79A 0 40,-3.3 40,-2.0 -2,-0.5 3,-0.3 -0.977 10.1-164.1-122.8 113.4 103.9 76.7 49.3 12 177 A G E +AB 50 78A 2 66,-3.0 66,-1.3 -2,-0.5 38,-0.2 -0.616 60.3 42.0 -96.4 163.2 105.4 76.0 45.8 13 178 A N S S+ 0 0 72 36,-0.8 2,-0.3 1,-0.2 -1,-0.2 0.882 71.9 153.4 70.7 44.2 105.6 72.9 43.7 14 179 A V - 0 0 1 35,-1.5 35,-0.3 -3,-0.3 -1,-0.2 -0.717 32.5-139.7 -98.3 143.5 102.1 71.6 44.5 15 180 A D > - 0 0 17 -2,-0.3 3,-2.1 32,-0.1 28,-0.1 -0.703 25.4-103.4-109.7 166.9 100.3 69.3 42.0 16 181 A Y T 3 S+ 0 0 100 1,-0.3 24,-0.1 -2,-0.2 -1,-0.0 0.477 117.3 59.0 -67.7 -6.5 96.7 69.1 40.7 17 182 A G T 3 S+ 0 0 34 2,-0.1 -1,-0.3 0, 0.0 2,-0.1 0.405 78.4 116.6 -98.3 0.0 96.0 66.1 42.9 18 183 A A < - 0 0 13 -3,-2.1 2,-0.3 4,-0.0 20,-0.0 -0.375 50.4-155.8 -68.0 143.5 96.8 67.8 46.2 19 184 A T > - 0 0 57 1,-0.1 4,-2.3 -2,-0.1 5,-0.1 -0.831 25.8-120.6-117.3 158.6 94.0 68.2 48.7 20 185 A A H > S+ 0 0 48 -2,-0.3 4,-2.8 1,-0.2 5,-0.2 0.851 115.6 56.4 -64.5 -38.6 93.5 70.8 51.5 21 186 A E H > S+ 0 0 136 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.907 108.2 47.3 -58.3 -42.2 93.4 67.9 54.0 22 187 A E H > S+ 0 0 60 2,-0.2 4,-2.2 1,-0.2 -2,-0.2 0.928 113.7 47.6 -67.0 -45.9 96.8 66.7 52.8 23 188 A L H X S+ 0 0 0 -4,-2.3 4,-1.7 2,-0.2 -2,-0.2 0.924 112.3 47.5 -62.9 -45.4 98.3 70.1 53.0 24 189 A E H X S+ 0 0 55 -4,-2.8 4,-1.2 1,-0.2 -1,-0.2 0.924 110.3 54.1 -59.5 -44.0 96.9 70.9 56.5 25 190 A A H >< S+ 0 0 53 -4,-2.5 3,-0.5 -5,-0.2 4,-0.4 0.914 107.0 51.7 -57.9 -40.4 98.2 67.4 57.6 26 191 A H H 3< S+ 0 0 51 -4,-2.2 3,-0.2 1,-0.2 -1,-0.2 0.870 119.8 34.0 -64.1 -35.5 101.8 68.4 56.3 27 192 A F H >< S+ 0 0 0 -4,-1.7 3,-1.9 -3,-0.2 4,-0.5 0.414 87.3 105.4-101.5 3.7 101.8 71.7 58.2 28 193 A H G X< S+ 0 0 119 -4,-1.2 3,-1.2 -3,-0.5 -1,-0.2 0.808 75.1 56.7 -54.3 -43.0 99.8 70.5 61.3 29 194 A G G 3 S+ 0 0 80 -4,-0.4 -1,-0.3 -3,-0.2 3,-0.1 0.672 96.6 65.8 -64.7 -19.4 102.8 70.4 63.6 30 195 A C G < S- 0 0 13 -3,-1.9 -1,-0.2 1,-0.3 2,-0.2 0.677 119.1 -82.2 -74.5 -19.3 103.6 74.1 62.9 31 196 A G < - 0 0 22 -3,-1.2 -1,-0.3 -4,-0.5 -4,-0.0 -0.659 68.5 -28.4 137.1 172.0 100.4 75.2 64.6 32 197 A S - 0 0 75 -2,-0.2 24,-2.5 -3,-0.1 25,-0.4 -0.238 57.0-143.0 -56.9 135.9 96.6 75.6 64.0 33 198 A V E -C 55 0A 28 22,-0.3 22,-0.3 1,-0.1 3,-0.1 -0.884 17.0-174.2-108.5 129.9 95.7 76.3 60.4 34 199 A N E + 0 0 88 20,-3.0 2,-0.3 -2,-0.4 21,-0.2 0.829 69.4 0.1 -84.9 -45.1 92.8 78.8 59.5 35 200 A R E -C 54 0A 164 19,-1.5 19,-3.1 2,-0.0 2,-0.5 -0.995 51.5-155.2-152.7 141.9 92.6 78.3 55.8 36 201 A V E -C 53 0A 33 -2,-0.3 2,-0.5 17,-0.2 17,-0.2 -0.996 14.5-170.9-117.2 128.5 94.2 76.4 52.9 37 202 A T E -C 52 0A 55 15,-2.9 15,-2.5 -2,-0.5 2,-0.4 -0.985 2.2-166.6-117.9 127.9 94.1 77.9 49.4 38 203 A I E -C 51 0A 59 -2,-0.5 2,-0.5 13,-0.2 13,-0.2 -0.966 1.4-169.2-116.0 129.5 95.2 75.8 46.5 39 204 A L E -C 50 0A 59 11,-3.3 11,-2.8 -2,-0.4 2,-0.4 -0.963 7.9-177.9-124.7 112.0 95.8 77.6 43.1 40 205 A C E +C 49 0A 33 -2,-0.5 9,-0.3 9,-0.2 3,-0.1 -0.928 21.0 175.3-115.6 131.6 96.3 75.3 40.0 41 206 A D S S+ 0 0 98 7,-3.0 2,-0.3 -2,-0.4 8,-0.2 0.473 76.1 48.6-108.4 -9.4 97.0 76.5 36.5 42 207 A K - 0 0 81 6,-1.0 6,-0.5 1,-0.1 -1,-0.2 -0.994 54.0-176.6-131.7 139.5 97.5 72.9 35.0 43 208 A F S S+ 0 0 151 -2,-0.3 2,-0.3 1,-0.1 -1,-0.1 0.343 71.4 18.0-117.6 2.3 95.1 69.9 35.5 44 209 A S S S+ 0 0 82 2,-0.3 -1,-0.1 0, 0.0 -28,-0.0 -0.935 106.5 22.0-161.5 169.5 97.0 67.1 33.7 45 210 A G S S+ 0 0 51 -2,-0.3 -3,-0.1 -3,-0.1 0, 0.0 -0.309 118.7 8.4 64.9-147.0 100.6 66.4 32.4 46 211 A H S S- 0 0 165 1,-0.1 -2,-0.3 -31,-0.1 -3,-0.0 -0.489 91.6-121.2 -65.9 129.5 103.3 68.4 34.1 47 212 A P - 0 0 34 0, 0.0 2,-0.2 0, 0.0 -32,-0.1 -0.206 27.1-173.7 -75.1 163.3 101.8 70.3 37.1 48 213 A K + 0 0 130 -6,-0.5 -7,-3.0 2,-0.0 -6,-1.0 -0.762 38.1 95.0-156.4 100.2 101.7 74.0 37.6 49 214 A G E - C 0 40A 13 -35,-0.3 -35,-1.5 -9,-0.3 -36,-0.8 -0.990 38.1-160.0-176.2 172.8 100.4 75.3 40.9 50 215 A F E -AC 12 39A 45 -11,-2.8 -11,-3.3 -2,-0.3 2,-0.3 -0.883 12.6-136.4-150.9 179.9 100.9 76.5 44.5 51 216 A A E -AC 11 38A 0 -40,-2.0 -40,-3.3 -2,-0.3 2,-0.4 -0.954 5.2-141.2-143.0 158.2 99.1 77.0 47.8 52 217 A Y E -AC 10 37A 60 -15,-2.5 -15,-2.9 -2,-0.3 2,-0.5 -0.992 12.7-161.5-115.4 134.1 98.7 79.5 50.7 53 218 A I E -AC 9 36A 0 -44,-2.1 -44,-1.8 -2,-0.4 2,-0.7 -0.974 5.0-159.6-114.9 118.8 98.4 78.3 54.2 54 219 A E E -AC 8 35A 38 -19,-3.1 -20,-3.0 -2,-0.5 -19,-1.5 -0.881 11.8-156.9 -98.2 115.0 97.0 80.8 56.6 55 220 A F E - C 0 33A 0 -48,-3.0 -22,-0.3 -2,-0.7 -23,-0.1 -0.527 22.7-125.9 -86.0 159.0 97.9 80.0 60.2 56 221 A S S S+ 0 0 35 -24,-2.5 2,-0.4 -2,-0.2 -23,-0.1 0.819 97.0 38.7 -66.3 -38.2 96.0 81.1 63.3 57 222 A D S > S- 0 0 81 -25,-0.4 3,-0.9 -50,-0.1 4,-0.3 -0.943 75.8-133.6-118.7 146.4 99.1 82.6 64.9 58 223 A K T >> S+ 0 0 117 -2,-0.4 3,-1.7 1,-0.2 4,-0.7 0.813 102.4 66.6 -63.0 -35.6 102.0 84.5 63.2 59 224 A E H 3> S+ 0 0 108 1,-0.3 4,-1.9 2,-0.2 -1,-0.2 0.785 89.3 67.6 -60.8 -27.3 104.7 82.5 65.1 60 225 A S H <> S+ 0 0 0 -3,-0.9 4,-2.5 1,-0.2 -1,-0.3 0.771 91.5 62.0 -63.4 -26.4 103.6 79.4 63.1 61 226 A V H <> S+ 0 0 8 -3,-1.7 4,-0.9 -4,-0.3 -1,-0.2 0.979 105.5 44.1 -62.4 -53.7 104.9 81.0 59.9 62 227 A R H >< S+ 0 0 191 -4,-0.7 3,-1.1 1,-0.2 4,-0.4 0.918 113.8 51.7 -58.7 -46.5 108.5 81.1 61.2 63 228 A T H >< S+ 0 0 73 -4,-1.9 3,-1.6 1,-0.2 -1,-0.2 0.933 106.4 54.9 -53.1 -47.3 108.1 77.5 62.5 64 229 A S H >< S+ 0 0 0 -4,-2.5 3,-2.1 1,-0.3 -1,-0.2 0.638 86.3 79.8 -64.7 -21.5 106.9 76.3 59.0 65 230 A L G X< S+ 0 0 59 -3,-1.1 3,-1.7 -4,-0.9 -1,-0.3 0.769 80.4 68.7 -58.3 -27.5 110.0 77.7 57.3 66 231 A A G < S+ 0 0 91 -3,-1.6 -1,-0.3 -4,-0.4 -2,-0.2 0.720 90.3 64.9 -63.3 -22.7 111.8 74.5 58.5 67 232 A L G X S+ 0 0 43 -3,-2.1 3,-2.0 -4,-0.2 -1,-0.3 0.435 70.9 120.5 -82.1 -0.8 109.4 72.6 56.0 68 233 A D T < S+ 0 0 59 -3,-1.7 10,-0.2 1,-0.3 3,-0.1 -0.470 83.6 14.6 -58.0 136.7 111.0 74.3 53.0 69 234 A E T 3 S+ 0 0 133 8,-3.4 -1,-0.3 1,-0.3 9,-0.1 0.446 95.9 138.7 71.6 5.1 112.5 71.5 50.7 70 235 A S < - 0 0 25 -3,-2.0 7,-2.7 7,-0.2 2,-0.5 -0.388 62.3-102.3 -72.3 158.8 110.5 68.9 52.6 71 236 A L E +D 76 0B 115 5,-0.2 2,-0.4 -3,-0.1 5,-0.2 -0.719 41.9 175.1 -87.8 121.0 108.8 66.1 50.5 72 237 A F E > S-D 75 0B 13 3,-3.1 3,-1.6 -2,-0.5 -49,-0.0 -0.994 76.0 -14.4-129.3 118.3 105.1 66.6 50.0 73 238 A R T 3 S- 0 0 103 -2,-0.4 -1,-0.1 1,-0.3 3,-0.1 0.881 131.0 -53.1 53.3 41.0 103.4 64.1 47.7 74 239 A G T 3 S+ 0 0 69 1,-0.2 2,-0.4 -3,-0.0 -1,-0.3 0.557 120.5 100.6 76.7 9.0 106.8 63.0 46.4 75 240 A R E < S-D 72 0B 81 -3,-1.6 -3,-3.1 -62,-0.1 2,-0.5 -0.966 76.9-114.7-127.9 143.1 108.0 66.5 45.5 76 241 A Q E -D 71 0B 118 -2,-0.4 -5,-0.2 -5,-0.2 2,-0.2 -0.644 38.3-147.6 -74.6 119.8 110.2 68.9 47.3 77 242 A I - 0 0 3 -7,-2.7 -8,-3.4 -2,-0.5 2,-0.5 -0.556 5.9-133.1 -89.7 155.4 108.1 71.9 48.3 78 243 A K E -B 12 0A 115 -66,-1.3 -66,-3.0 -10,-0.2 2,-0.5 -0.953 21.8-167.3-106.4 123.7 109.2 75.6 48.5 79 244 A V E +B 11 0A 6 -2,-0.5 -68,-0.2 -68,-0.2 -11,-0.1 -0.964 20.1 148.7-118.9 117.5 108.1 77.4 51.7 80 245 A I E -B 10 0A 43 -70,-2.1 -70,-3.1 -2,-0.5 -2,-0.0 -0.974 55.2 -86.7-137.2 154.0 108.4 81.2 52.0 81 246 A P E > -B 9 0A 46 0, 0.0 3,-1.8 0, 0.0 -72,-0.3 -0.388 41.2-123.5 -55.5 140.6 106.3 83.8 53.9 82 247 A K T 3 S+ 0 0 65 -74,-2.1 3,-0.3 -77,-0.4 -73,-0.1 0.866 110.3 48.6 -59.0 -40.1 103.3 84.9 51.6 83 248 A R T > S+ 0 0 49 -78,-0.5 3,-1.3 -75,-0.4 -1,-0.3 0.289 76.0 119.3 -87.0 14.0 104.3 88.6 51.7 84 249 A T T < S+ 0 0 66 -3,-1.8 2,-1.3 1,-0.3 -1,-0.2 0.900 81.1 38.6 -39.1 -65.9 108.0 87.9 50.9 85 250 A N T 3 S+ 0 0 159 -3,-0.3 -1,-0.3 -4,-0.2 -2,-0.0 -0.367 107.2 85.7 -89.3 54.8 108.0 89.9 47.6 86 251 A R S < S- 0 0 34 -2,-1.3 2,-0.6 -3,-1.3 -3,-0.0 -0.968 93.4 -87.5-150.7 144.0 105.7 92.7 49.1 87 252 A P 0 0 127 0, 0.0 -2,-0.1 0, 0.0 -3,-0.1 -0.403 360.0 360.0 -66.4 106.3 106.8 95.8 51.2 88 253 A G 0 0 107 -2,-0.6 -2,-0.2 -4,-0.2 -5,-0.0 -0.257 360.0 360.0 125.9 360.0 107.1 95.0 55.0