==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=18-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 10-JUL-03 1UHS . COMPND 2 MOLECULE: HOMEODOMAIN ONLY PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR K.SAITO,S.KOSHIBA,M.INOUE,M.SHIROUZU,T.TERADA,T.YABUKI, . 72 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6291.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 45 62.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 6.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 34 47.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 138 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -82.5 -21.5 -15.3 -9.7 2 2 A S + 0 0 133 1,-0.2 0, 0.0 2,-0.1 0, 0.0 -0.947 360.0 161.4-117.3 116.2 -18.8 -14.5 -7.1 3 3 A E - 0 0 157 -2,-0.5 -1,-0.2 2,-0.1 0, 0.0 0.860 28.7-153.0 -96.0 -48.7 -16.1 -12.0 -7.9 4 4 A G + 0 0 84 1,-0.2 2,-0.5 0, 0.0 -2,-0.1 0.849 41.1 144.9 76.2 35.2 -14.8 -11.1 -4.5 5 5 A A - 0 0 70 2,-0.0 2,-0.4 0, 0.0 -1,-0.2 -0.930 24.8-176.1-112.1 124.7 -13.7 -7.6 -5.5 6 6 A A - 0 0 90 -2,-0.5 2,-0.3 0, 0.0 0, 0.0 -0.943 16.8-137.6-121.4 141.1 -13.9 -4.7 -3.0 7 7 A T - 0 0 133 -2,-0.4 2,-0.1 1,-0.1 -2,-0.0 -0.747 17.9-133.4 -97.8 143.0 -13.1 -1.0 -3.6 8 8 A M - 0 0 69 -2,-0.3 2,-0.2 1,-0.1 -1,-0.1 -0.291 16.7-138.2 -85.9 174.2 -11.2 1.1 -1.1 9 9 A T > - 0 0 75 -2,-0.1 4,-1.7 1,-0.0 5,-0.1 -0.707 28.9 -99.6-126.2 177.9 -12.0 4.6 0.1 10 10 A E H > S+ 0 0 116 -2,-0.2 4,-1.8 1,-0.2 5,-0.2 0.817 119.0 60.7 -68.3 -31.1 -10.3 7.9 0.9 11 11 A D H > S+ 0 0 109 1,-0.2 4,-1.2 2,-0.2 -1,-0.2 0.902 107.4 43.7 -62.9 -42.5 -10.3 7.1 4.6 12 12 A Q H > S+ 0 0 33 1,-0.2 4,-3.2 2,-0.2 5,-0.2 0.873 113.3 51.2 -70.7 -38.3 -8.2 3.9 4.0 13 13 A V H X S+ 0 0 38 -4,-1.7 4,-0.9 1,-0.2 -1,-0.2 0.779 108.5 52.9 -69.5 -27.2 -5.9 5.7 1.6 14 14 A E H X S+ 0 0 108 -4,-1.8 4,-0.7 2,-0.2 -1,-0.2 0.807 117.7 35.9 -77.5 -31.2 -5.4 8.5 4.2 15 15 A I H X S+ 0 0 43 -4,-1.2 4,-1.4 2,-0.2 -2,-0.2 0.868 114.3 53.9 -88.0 -43.2 -4.4 6.0 7.0 16 16 A L H < S+ 0 0 0 -4,-3.2 -3,-0.2 1,-0.2 -2,-0.2 0.804 110.4 50.1 -61.6 -29.5 -2.5 3.4 4.8 17 17 A E H >X S+ 0 0 73 -4,-0.9 4,-1.6 -5,-0.2 3,-1.4 0.849 104.7 56.0 -77.3 -36.2 -0.4 6.3 3.6 18 18 A Y H 3X S+ 0 0 136 -4,-0.7 4,-0.9 1,-0.3 -2,-0.2 0.800 105.9 52.7 -65.9 -28.9 0.4 7.6 7.1 19 19 A N H 3< S+ 0 0 18 -4,-1.4 -1,-0.3 1,-0.1 5,-0.2 0.019 109.7 50.7 -95.5 26.9 1.7 4.2 8.0 20 20 A F H <4 S+ 0 0 6 -3,-1.4 -2,-0.2 3,-0.1 -1,-0.1 0.600 122.1 21.0-128.1 -39.7 4.0 4.1 5.0 21 21 A N H < S+ 0 0 97 -4,-1.6 -3,-0.1 1,-0.1 -2,-0.1 0.704 128.6 45.5-104.1 -29.6 6.0 7.4 5.1 22 22 A K S < S+ 0 0 134 -4,-0.9 -1,-0.1 -5,-0.4 -4,-0.1 0.003 132.0 15.5-103.4 27.2 5.5 8.3 8.8 23 23 A V S S- 0 0 65 1,-0.1 2,-0.3 -3,-0.0 -3,-0.1 0.192 112.3 -65.2-155.3 -70.9 6.3 4.8 10.0 24 24 A N - 0 0 45 -5,-0.2 -2,-0.1 1,-0.1 -1,-0.1 -0.972 22.2-121.2-177.8-177.2 8.0 2.4 7.6 25 25 A K S S+ 0 0 60 -2,-0.3 29,-0.1 1,-0.1 -1,-0.1 0.688 105.3 37.6-114.2 -36.0 7.7 0.4 4.4 26 26 A H S S+ 0 0 138 -6,-0.1 2,-0.1 25,-0.0 -1,-0.1 -0.529 79.0 176.7-117.9 63.4 8.2 -3.2 5.5 27 27 A P - 0 0 17 0, 0.0 -3,-0.0 0, 0.0 -8,-0.0 -0.404 30.8-112.7 -69.9 142.4 6.5 -3.3 8.9 28 28 A D >> - 0 0 79 1,-0.1 4,-2.7 -2,-0.1 3,-0.7 -0.229 34.6 -96.6 -70.2 162.9 6.3 -6.6 10.8 29 29 A P H 3> S+ 0 0 91 0, 0.0 4,-1.8 0, 0.0 5,-0.1 0.756 124.2 62.7 -51.3 -25.5 3.0 -8.4 11.4 30 30 A T H 3> S+ 0 0 103 2,-0.2 4,-0.8 1,-0.2 0, 0.0 0.954 111.1 33.1 -66.2 -51.5 2.9 -6.7 14.8 31 31 A T H <> S+ 0 0 39 -3,-0.7 4,-1.4 1,-0.2 -1,-0.2 0.822 116.4 58.2 -74.2 -32.3 2.7 -3.2 13.4 32 32 A L H X S+ 0 0 11 -4,-2.7 4,-2.1 1,-0.2 -2,-0.2 0.864 99.9 57.7 -65.4 -36.8 0.7 -4.3 10.4 33 33 A C H X S+ 0 0 58 -4,-1.8 4,-1.9 -5,-0.3 -1,-0.2 0.863 104.6 51.7 -61.8 -36.9 -2.0 -5.7 12.7 34 34 A L H X S+ 0 0 111 -4,-0.8 4,-1.5 1,-0.2 -1,-0.2 0.869 109.3 49.6 -68.0 -37.5 -2.4 -2.3 14.3 35 35 A I H X S+ 0 0 0 -4,-1.4 4,-2.1 2,-0.2 5,-0.5 0.860 108.3 53.9 -69.7 -36.5 -2.9 -0.6 10.9 36 36 A A H X>S+ 0 0 5 -4,-2.1 4,-2.3 1,-0.2 5,-2.1 0.946 111.6 42.7 -63.1 -50.4 -5.5 -3.2 9.8 37 37 A A H <5S+ 0 0 85 -4,-1.9 -1,-0.2 3,-0.2 -2,-0.2 0.807 113.1 57.2 -66.5 -29.8 -7.7 -2.6 12.8 38 38 A E H <5S+ 0 0 129 -4,-1.5 -2,-0.2 -5,-0.2 -3,-0.2 0.999 119.7 24.0 -64.0 -69.3 -7.2 1.1 12.5 39 39 A A H <5S- 0 0 22 -4,-2.1 -2,-0.2 -27,-0.1 -3,-0.2 0.834 116.8-107.9 -66.9 -33.0 -8.4 1.6 8.9 40 40 A G T <5S+ 0 0 56 -4,-2.3 -3,-0.2 -5,-0.5 -4,-0.1 0.665 77.8 116.7 110.4 26.1 -10.5 -1.5 9.1 41 41 A L < - 0 0 22 -5,-2.1 2,-0.3 -6,-0.4 -1,-0.2 -0.404 60.0-103.0-110.9-171.2 -8.6 -3.9 6.9 42 42 A T > - 0 0 80 -2,-0.1 4,-3.3 1,-0.1 5,-0.3 -0.777 26.9-112.0-115.7 160.8 -6.8 -7.2 7.3 43 43 A E H > S+ 0 0 82 -2,-0.3 4,-1.0 1,-0.2 -1,-0.1 0.802 120.1 53.6 -58.7 -29.4 -3.1 -8.0 7.5 44 44 A E H > S+ 0 0 136 2,-0.2 4,-0.9 1,-0.1 -1,-0.2 0.873 114.1 39.5 -73.5 -38.7 -3.5 -9.8 4.2 45 45 A Q H > S+ 0 0 87 -3,-0.3 4,-1.6 2,-0.2 3,-0.4 0.912 112.8 53.9 -76.9 -45.4 -5.0 -6.7 2.5 46 46 A T H X S+ 0 0 0 -4,-3.3 4,-1.7 1,-0.2 -1,-0.2 0.807 105.4 57.1 -59.0 -30.0 -2.7 -4.2 4.2 47 47 A Q H X S+ 0 0 111 -4,-1.0 4,-2.1 -5,-0.3 -1,-0.2 0.886 102.9 52.4 -69.1 -39.9 0.3 -6.2 2.9 48 48 A K H X S+ 0 0 112 -4,-0.9 4,-2.8 -3,-0.4 5,-0.3 0.884 107.3 53.1 -63.5 -39.8 -0.9 -5.9 -0.7 49 49 A W H X S+ 0 0 26 -4,-1.6 4,-3.0 1,-0.2 5,-0.3 0.941 112.6 42.5 -61.2 -49.8 -1.1 -2.1 -0.4 50 50 A F H X S+ 0 0 7 -4,-1.7 4,-1.5 1,-0.2 -1,-0.2 0.832 114.7 52.9 -66.4 -32.9 2.5 -1.8 0.9 51 51 A K H X S+ 0 0 148 -4,-2.1 4,-0.8 2,-0.2 -2,-0.2 0.926 116.4 36.9 -68.6 -46.4 3.7 -4.3 -1.6 52 52 A Q H >X S+ 0 0 135 -4,-2.8 3,-0.9 2,-0.2 4,-0.6 0.930 117.1 50.8 -71.8 -47.5 2.1 -2.5 -4.6 53 53 A R H >X S+ 0 0 112 -4,-3.0 4,-1.8 -5,-0.3 3,-1.0 0.826 103.2 62.1 -59.7 -32.3 2.8 1.0 -3.3 54 54 A L H 3X S+ 0 0 9 -4,-1.5 4,-2.4 -5,-0.3 -1,-0.3 0.843 91.6 65.5 -62.9 -34.0 6.5 -0.1 -2.7 55 55 A A H << S+ 0 0 69 -3,-0.9 4,-0.4 -4,-0.8 -1,-0.3 0.800 108.1 40.6 -58.8 -29.3 6.8 -0.7 -6.5 56 56 A E H XX S+ 0 0 140 -3,-1.0 4,-1.5 -4,-0.6 3,-0.6 0.842 110.0 56.7 -87.1 -38.5 6.3 3.1 -7.0 57 57 A W H 3X S+ 0 0 57 -4,-1.8 4,-2.5 1,-0.2 5,-0.5 0.887 101.0 58.4 -60.0 -40.6 8.4 4.2 -4.0 58 58 A R H 3X S+ 0 0 108 -4,-2.4 4,-1.1 1,-0.2 5,-0.3 0.816 107.2 48.3 -59.4 -30.8 11.5 2.3 -5.4 59 59 A R H <4 S+ 0 0 217 -3,-0.6 -1,-0.2 -4,-0.4 -2,-0.2 0.806 113.8 46.9 -79.3 -31.4 11.2 4.4 -8.5 60 60 A S H < S+ 0 0 102 -4,-1.5 -2,-0.2 -3,-0.1 -3,-0.1 0.984 121.5 31.9 -73.2 -62.8 10.9 7.7 -6.6 61 61 A E H < S- 0 0 131 -4,-2.5 -3,-0.2 -5,-0.1 -2,-0.1 0.952 112.2-123.1 -60.7 -52.0 13.7 7.2 -4.1 62 62 A G < - 0 0 46 -4,-1.1 -3,-0.2 -5,-0.5 -2,-0.1 0.308 33.9-177.0 109.1 123.5 15.9 5.2 -6.5 63 63 A L - 0 0 98 -5,-0.3 -1,-0.0 1,-0.1 -5,-0.0 -0.958 26.5-100.8-146.3 162.5 17.4 1.8 -6.2 64 64 A P - 0 0 122 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 0.151 38.7-108.0 -69.5-167.9 19.7 -0.7 -8.1 65 65 A S - 0 0 94 2,-0.1 2,-1.1 0, 0.0 0, 0.0 -0.983 7.8-137.5-131.9 141.8 18.6 -3.7 -10.2 66 66 A E + 0 0 212 -2,-0.4 2,-0.3 2,-0.1 0, 0.0 -0.659 59.5 119.8 -98.1 78.6 18.9 -7.4 -9.6 67 67 A C - 0 0 80 -2,-1.1 2,-0.6 5,-0.1 -2,-0.1 -0.914 50.4-148.1-146.4 115.0 19.9 -8.7 -13.0 68 68 A R + 0 0 244 -2,-0.3 2,-0.3 2,-0.0 -2,-0.1 -0.730 26.5 174.3 -86.2 118.0 23.1 -10.6 -13.8 69 69 A S - 0 0 64 3,-1.0 -2,-0.0 -2,-0.6 0, 0.0 -0.897 39.2-133.0-124.2 153.7 24.4 -9.8 -17.3 70 70 A V S S+ 0 0 151 -2,-0.3 -1,-0.1 1,-0.1 -2,-0.0 0.812 111.2 25.2 -71.9 -30.9 27.5 -10.8 -19.2 71 71 A T 0 0 128 1,-0.2 -1,-0.1 -3,-0.0 -2,-0.0 0.854 360.0 360.0 -97.9 -50.4 28.0 -7.2 -20.4 72 72 A D 0 0 187 -4,-0.0 -3,-1.0 0, 0.0 -1,-0.2 -0.752 360.0 360.0 -90.0 360.0 26.2 -5.2 -17.7