==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=18-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 14-JUL-03 1UHZ . COMPND 2 MOLECULE: STAUFEN (RNA BINDING PROTEIN) HOMOLOG 2; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR F.HE,Y.MUTO,N.OBAYASHI,M.SHIROUZU,T.TERADA,T.KIGAWA,M.INOUE, . 89 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6560.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 68.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 19.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 7.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 29 32.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 126 0, 0.0 3,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-139.4 -12.2 -7.9 -8.1 2 2 A S - 0 0 92 1,-0.0 3,-0.1 2,-0.0 5,-0.0 0.993 360.0-119.6 66.2 80.2 -8.6 -9.0 -8.6 3 3 A S - 0 0 95 1,-0.1 7,-0.1 3,-0.0 4,-0.1 -0.157 37.3 -95.5 -49.4 139.1 -7.8 -8.0 -12.1 4 4 A G S S+ 0 0 64 2,-0.1 -1,-0.1 3,-0.0 -2,-0.0 0.112 90.7 32.6 -49.6 171.0 -6.8 -10.9 -14.2 5 5 A S S S- 0 0 120 -3,-0.1 2,-0.1 2,-0.0 0, 0.0 0.270 114.5 -40.0 59.2 165.6 -3.1 -11.8 -14.7 6 6 A S S S+ 0 0 127 4,-0.1 -2,-0.1 3,-0.0 3,-0.0 -0.396 72.3 178.5 -62.3 129.8 -0.5 -11.3 -12.1 7 7 A G > - 0 0 22 -2,-0.1 4,-1.7 1,-0.1 5,-0.1 -0.808 42.2-116.1-130.0 170.6 -1.1 -8.0 -10.3 8 8 A P H > S+ 0 0 28 0, 0.0 4,-1.4 0, 0.0 5,-0.1 0.815 112.8 53.4 -75.0 -32.5 0.5 -5.9 -7.5 9 9 A I H >> S+ 0 0 34 2,-0.2 4,-3.2 3,-0.2 3,-0.8 0.998 114.6 36.8 -64.0 -67.8 -2.7 -6.2 -5.4 10 10 A S H 3> S+ 0 0 33 1,-0.3 4,-4.5 2,-0.2 5,-0.4 0.928 114.2 57.5 -49.7 -53.1 -3.0 -9.9 -5.5 11 11 A R H 3X S+ 0 0 104 -4,-1.7 4,-0.7 1,-0.2 -1,-0.3 0.840 112.9 42.0 -46.8 -38.3 0.7 -10.3 -5.3 12 12 A L H XX S+ 0 0 0 -4,-1.4 4,-2.3 -3,-0.8 3,-0.6 0.923 114.2 49.6 -75.4 -47.7 0.5 -8.3 -2.1 13 13 A A H 3X S+ 0 0 21 -4,-3.2 4,-2.3 1,-0.3 5,-0.3 0.898 108.5 54.3 -57.2 -42.9 -2.6 -10.1 -0.8 14 14 A Q H 3X S+ 0 0 107 -4,-4.5 4,-2.4 1,-0.2 -1,-0.3 0.790 109.8 48.3 -61.4 -28.8 -0.9 -13.4 -1.5 15 15 A I H S+ 0 0 2 -4,-2.3 5,-1.7 2,-0.2 6,-0.7 0.830 118.7 37.7 -68.6 -33.5 -0.3 -11.0 3.4 17 17 A Q H ><5S+ 0 0 120 -4,-2.3 3,-0.6 2,-0.2 -2,-0.2 0.873 116.2 50.4 -83.7 -42.7 -1.9 -14.5 3.4 18 18 A A H 3<5S+ 0 0 79 -4,-2.4 -2,-0.2 1,-0.3 -3,-0.2 0.815 110.3 52.4 -64.3 -31.0 1.3 -16.4 2.8 19 19 A R T 3<5S- 0 0 125 -4,-1.9 -1,-0.3 -5,-0.1 -2,-0.2 0.675 104.8-135.6 -77.4 -18.8 2.8 -14.4 5.6 20 20 A K T < 5S+ 0 0 187 -3,-0.6 -3,-0.2 -4,-0.2 -2,-0.1 0.813 75.7 107.5 66.1 30.8 -0.1 -15.5 7.8 21 21 A E S S+ 0 0 94 0, 0.0 3,-0.5 0, 0.0 -1,-0.1 0.866 108.3 49.7 -75.0 -39.1 -8.5 16.8 -15.5 36 36 A R T 3 S+ 0 0 194 1,-0.3 2,-0.4 0, 0.0 -2,-0.0 0.974 132.7 11.6 -62.8 -58.1 -7.7 14.3 -18.2 37 37 A R T 3 S- 0 0 186 20,-0.0 -3,-0.4 2,-0.0 -1,-0.3 -0.696 84.5-162.5-125.4 77.5 -5.6 12.0 -16.1 38 38 A R < - 0 0 101 -3,-0.5 2,-0.6 -2,-0.4 -5,-0.3 -0.216 20.7-119.7 -58.3 147.9 -6.1 13.1 -12.5 39 39 A E E -A 32 0A 105 -7,-2.0 -7,-3.1 -5,-0.1 2,-0.5 -0.844 26.1-161.4 -97.6 118.0 -3.5 11.8 -10.0 40 40 A F E -AB 31 55A 43 15,-1.8 15,-1.0 -2,-0.6 2,-0.6 -0.866 9.0-143.7-103.1 128.9 -4.9 9.7 -7.3 41 41 A V E -AB 30 54A 44 -11,-2.1 -12,-2.0 -2,-0.5 -11,-1.1 -0.814 21.9-174.1 -93.9 120.7 -2.9 9.1 -4.1 42 42 A M E -AB 28 53A 16 11,-2.8 11,-2.6 -2,-0.6 2,-0.3 -0.880 8.0-156.8-116.7 147.9 -3.2 5.6 -2.7 43 43 A Q E -AB 27 52A 48 -16,-2.6 -16,-2.4 -2,-0.3 2,-0.4 -0.913 2.6-163.9-123.7 150.4 -1.9 4.2 0.6 44 44 A V E -AB 26 51A 0 7,-3.0 7,-2.7 -2,-0.3 2,-0.5 -0.997 2.1-163.5-137.4 129.7 -1.2 0.6 1.6 45 45 A K E +AB 25 50A 111 -20,-2.2 -20,-2.9 -2,-0.4 2,-0.5 -0.958 11.2 175.2-117.4 116.9 -0.7 -0.7 5.1 46 46 A V E > - B 0 49A 5 3,-2.8 3,-2.5 -2,-0.5 2,-0.5 -0.952 60.2 -61.3-125.5 110.4 1.0 -4.1 5.5 47 47 A G T 3 S- 0 0 61 -2,-0.5 -31,-0.0 -25,-0.3 -24,-0.0 -0.390 122.3 -14.7 58.4-109.0 1.7 -5.3 9.1 48 48 A N T 3 S+ 0 0 150 -2,-0.5 2,-0.3 -3,-0.0 -1,-0.3 -0.015 126.7 83.0-113.1 25.5 4.2 -2.7 10.4 49 49 A E E < -B 46 0A 82 -3,-2.5 -3,-2.8 2,-0.0 2,-0.3 -0.905 55.5-164.8-129.4 157.0 4.9 -1.3 6.9 50 50 A V E +B 45 0A 62 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.972 7.0 178.1-140.9 153.4 3.2 1.3 4.7 51 51 A A E -B 44 0A 7 -7,-2.7 -7,-3.0 -2,-0.3 2,-0.3 -0.925 15.6-136.7-148.1 169.3 3.4 2.3 1.0 52 52 A T E -B 43 0A 72 -2,-0.3 2,-0.4 -9,-0.3 16,-0.3 -0.919 8.4-161.3-132.1 157.3 1.9 4.6 -1.5 53 53 A G E -B 42 0A 3 -11,-2.6 -11,-2.8 -2,-0.3 2,-0.4 -0.989 3.4-170.1-143.8 131.1 0.7 4.4 -5.0 54 54 A T E +B 41 0A 62 -2,-0.4 -13,-0.2 -13,-0.2 -15,-0.1 -0.967 21.0 139.6-124.1 137.8 -0.0 7.1 -7.6 55 55 A G E -B 40 0A 12 -15,-1.0 -15,-1.8 -2,-0.4 3,-0.1 -0.880 64.5 -83.5-156.5-174.8 -1.7 6.7 -11.0 56 56 A P S S+ 0 0 52 0, 0.0 2,-0.3 0, 0.0 -18,-0.2 0.643 114.4 23.7 -75.0 -15.6 -4.1 8.2 -13.5 57 57 A N S > S- 0 0 64 -17,-0.1 4,-3.3 1,-0.1 5,-0.2 -0.978 87.0-106.8-147.9 155.7 -6.9 6.6 -11.5 58 58 A K H > S+ 0 0 86 -2,-0.3 4,-1.9 2,-0.2 5,-0.2 0.918 117.6 58.5 -46.0 -53.1 -7.6 5.4 -8.0 59 59 A K H >> S+ 0 0 134 1,-0.2 3,-2.4 2,-0.2 4,-2.0 0.927 111.3 37.9 -40.3 -73.3 -7.4 1.8 -9.3 60 60 A I H 3> S+ 0 0 53 1,-0.3 4,-4.2 2,-0.3 5,-0.4 0.900 110.1 62.8 -46.2 -48.5 -3.9 2.2 -10.7 61 61 A A H 3X S+ 0 0 0 -4,-3.3 4,-0.6 1,-0.3 -19,-0.3 0.812 108.2 44.2 -47.3 -32.6 -3.1 4.3 -7.6 62 62 A K H S+ 0 0 6 -4,-3.5 5,-3.0 2,-0.2 4,-1.7 0.874 117.5 44.2 -72.8 -39.0 6.3 -5.2 -2.7 71 71 A L H <5S+ 0 0 55 -4,-2.4 -2,-0.2 -5,-0.3 -3,-0.2 0.931 112.2 51.2 -69.9 -47.8 9.4 -3.2 -3.7 72 72 A Q H <5S+ 0 0 90 -4,-4.6 -1,-0.2 1,-0.2 -2,-0.2 0.827 110.9 50.5 -58.0 -33.3 9.7 -1.7 -0.3 73 73 A L H <5S- 0 0 44 -4,-1.4 -1,-0.2 -5,-0.3 -2,-0.2 0.868 121.1-111.1 -72.1 -38.3 9.5 -5.2 1.1 74 74 A G T <5S+ 0 0 47 -4,-1.7 -3,-0.2 -5,-0.1 4,-0.2 0.722 83.4 118.8 108.9 37.0 12.1 -6.4 -1.3 75 75 A Y S S+ 0 0 88 -6,-0.6 4,-1.0 -5,-0.2 -5,-0.2 -0.048 94.9 96.3-137.3 29.1 10.8 -6.7 -6.7 77 77 A A H > S+ 0 0 34 -7,-0.2 4,-2.8 2,-0.2 5,-0.3 0.895 78.3 56.6 -85.2 -47.4 14.2 -5.2 -5.8 78 78 A S H > S+ 0 0 91 1,-0.2 4,-2.8 2,-0.2 5,-0.1 0.941 113.2 40.7 -47.7 -59.1 16.4 -7.8 -7.5 79 79 A T H > S+ 0 0 86 2,-0.2 4,-3.3 1,-0.2 5,-0.2 0.935 111.8 57.9 -55.9 -51.1 14.7 -7.2 -10.8 80 80 A S H X S+ 0 0 54 -4,-1.0 4,-2.8 1,-0.2 5,-0.2 0.934 111.6 39.7 -43.0 -65.5 14.6 -3.4 -10.2 81 81 A L H X S+ 0 0 119 -4,-2.8 4,-3.4 1,-0.2 -1,-0.2 0.941 112.4 57.3 -50.5 -54.9 18.4 -3.2 -9.8 82 82 A Q H < S+ 0 0 141 -4,-2.8 -1,-0.2 -5,-0.3 -2,-0.2 0.885 110.1 44.9 -42.4 -50.1 18.9 -5.7 -12.6 83 83 A D H < S+ 0 0 149 -4,-3.3 -1,-0.2 1,-0.2 -2,-0.2 0.954 111.9 50.8 -60.5 -52.7 17.0 -3.4 -14.9 84 84 A S H < S- 0 0 115 -4,-2.8 -2,-0.2 -5,-0.2 -1,-0.2 0.852 135.9 -27.3 -53.0 -37.5 18.8 -0.3 -13.6 85 85 A G < - 0 0 22 -4,-3.4 -1,-0.2 -5,-0.2 0, 0.0 -0.946 48.6-126.6-174.8 156.9 22.0 -2.2 -14.3 86 86 A P + 0 0 119 0, 0.0 3,-0.2 0, 0.0 -1,-0.1 0.979 35.4 168.4 -75.0 -62.6 23.6 -5.7 -14.5 87 87 A S - 0 0 114 1,-0.2 2,-1.2 -5,-0.0 -2,-0.1 0.937 26.8-149.4 42.9 81.8 26.5 -5.4 -12.1 88 88 A S 0 0 128 0, 0.0 -1,-0.2 0, 0.0 0, 0.0 -0.704 360.0 360.0 -84.7 98.1 27.5 -9.0 -11.9 89 89 A G 0 0 126 -2,-1.2 0, 0.0 -3,-0.2 0, 0.0 -0.796 360.0 360.0-143.0 360.0 28.9 -9.3 -8.4