==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION 27-NOV-03 1V65 . COMPND 2 MOLECULE: RIKEN CDNA 2610044O15; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN . 64 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7603.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 23 35.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 14 21.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 127 0, 0.0 4,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -63.3 4.5 30.0 -13.4 2 2 A S - 0 0 135 2,-0.2 3,-0.1 0, 0.0 0, 0.0 0.546 360.0 -11.5-133.6 -55.5 3.4 33.5 -14.2 3 3 A S S S- 0 0 128 1,-0.0 2,-0.0 0, 0.0 0, 0.0 0.701 115.0 -45.3-116.9 -67.5 1.4 35.1 -11.4 4 4 A G S S- 0 0 52 0, 0.0 2,-0.2 0, 0.0 -2,-0.2 0.143 71.7 -78.3-134.8-107.5 0.5 32.6 -8.7 5 5 A S + 0 0 112 -4,-0.1 0, 0.0 -3,-0.1 0, 0.0 -0.770 41.3 155.0-176.5 127.6 -1.0 29.1 -8.9 6 6 A S S S+ 0 0 136 -2,-0.2 -1,-0.0 0, 0.0 0, 0.0 -0.014 71.4 54.5-147.8 31.9 -4.5 27.6 -9.6 7 7 A G + 0 0 51 2,-0.0 3,-0.1 3,-0.0 -2,-0.1 0.521 44.8 172.6-127.3 -80.9 -3.8 24.2 -11.0 8 8 A V + 0 0 121 1,-0.2 2,-1.4 2,-0.1 3,-0.2 0.915 19.4 171.8 62.2 44.6 -1.6 21.7 -9.2 9 9 A T + 0 0 124 1,-0.2 -1,-0.2 2,-0.1 -2,-0.0 -0.647 9.8 169.5 -88.9 83.7 -2.4 18.9 -11.6 10 10 A Y - 0 0 208 -2,-1.4 -1,-0.2 -3,-0.1 -2,-0.1 0.839 27.5-152.8 -62.2 -33.5 0.0 16.2 -10.5 11 11 A D + 0 0 118 -3,-0.2 3,-0.1 1,-0.1 -2,-0.1 0.892 64.6 106.7 60.1 41.2 -1.8 13.8 -12.7 12 12 A D + 0 0 129 1,-0.1 -1,-0.1 0, 0.0 3,-0.0 -0.042 52.2 80.5-138.0 31.2 -0.7 10.9 -10.5 13 13 A V > + 0 0 90 1,-0.1 3,-0.6 3,-0.0 -1,-0.1 -0.355 41.5 129.1-135.9 54.3 -4.0 10.0 -8.8 14 14 A H T 3 S+ 0 0 134 1,-0.2 -1,-0.1 -3,-0.1 3,-0.0 -0.052 79.3 43.1 -98.5 31.1 -5.9 7.9 -11.2 15 15 A M T 3 + 0 0 98 -3,-0.0 2,-2.0 18,-0.0 -1,-0.2 0.071 64.6 140.2-162.4 30.7 -6.6 5.1 -8.7 16 16 A N < + 0 0 107 -3,-0.6 2,-0.5 5,-0.0 5,-0.1 -0.476 28.3 173.4 -82.7 69.3 -7.5 6.9 -5.4 17 17 A F - 0 0 39 -2,-2.0 -3,-0.0 4,-0.1 8,-0.0 -0.685 16.9-150.7 -83.4 123.8 -10.3 4.4 -4.5 18 18 A T > - 0 0 87 -2,-0.5 4,-3.0 1,-0.1 5,-0.1 -0.123 36.5 -85.2 -81.7-177.0 -11.7 5.1 -1.0 19 19 A E H > S+ 0 0 187 2,-0.2 4,-0.5 1,-0.2 -1,-0.1 0.926 130.9 43.5 -55.8 -48.5 -13.2 2.5 1.4 20 20 A E H >> S+ 0 0 162 1,-0.2 3,-1.5 2,-0.2 4,-0.5 0.950 115.9 46.5 -63.1 -50.9 -16.6 2.7 -0.3 21 21 A E H >4 S+ 0 0 85 1,-0.3 3,-2.0 2,-0.2 -2,-0.2 0.862 98.4 71.7 -59.9 -36.6 -15.2 2.7 -3.8 22 22 A W H >< S+ 0 0 60 -4,-3.0 3,-0.6 1,-0.3 -1,-0.3 0.771 97.8 51.0 -50.6 -27.2 -13.0 -0.2 -2.8 23 23 A D H << S+ 0 0 135 -3,-1.5 -1,-0.3 -4,-0.5 -2,-0.2 0.693 104.8 55.9 -84.3 -21.1 -16.2 -2.3 -2.8 24 24 A L T << S+ 0 0 134 -3,-2.0 -1,-0.2 -4,-0.5 -2,-0.2 0.122 95.6 91.5 -97.0 20.1 -17.2 -1.1 -6.3 25 25 A L S < S- 0 0 29 -3,-0.6 2,-0.2 -4,-0.1 -3,-0.0 -0.440 70.7-117.7-105.5-178.8 -13.9 -2.3 -7.8 26 26 A D > - 0 0 118 -2,-0.1 4,-2.3 1,-0.0 5,-0.2 -0.450 34.4 -94.1-110.2-175.3 -12.8 -5.6 -9.4 27 27 A S H > S+ 0 0 102 2,-0.2 4,-0.9 1,-0.2 5,-0.1 0.812 124.3 50.9 -70.2 -30.7 -10.2 -8.2 -8.6 28 28 A S H > S+ 0 0 86 2,-0.2 4,-2.2 3,-0.1 -1,-0.2 0.924 113.6 42.3 -72.5 -46.5 -7.6 -6.5 -10.9 29 29 A Q H > S+ 0 0 76 2,-0.2 4,-2.6 1,-0.2 5,-0.3 0.914 111.3 55.2 -66.6 -44.2 -8.1 -3.0 -9.3 30 30 A K H < S+ 0 0 85 -4,-2.3 4,-0.4 1,-0.2 -1,-0.2 0.802 116.3 39.1 -59.3 -29.6 -8.1 -4.4 -5.8 31 31 A R H X S+ 0 0 173 -4,-0.9 4,-2.1 2,-0.2 -1,-0.2 0.772 111.5 57.1 -90.3 -30.8 -4.8 -6.1 -6.5 32 32 A L H X S+ 0 0 100 -4,-2.2 4,-0.9 1,-0.2 -2,-0.2 0.879 106.6 49.3 -67.6 -38.6 -3.4 -3.2 -8.5 33 33 A Y H X S+ 0 0 78 -4,-2.6 4,-0.7 1,-0.2 -1,-0.2 0.774 115.4 44.7 -71.2 -26.4 -3.9 -0.8 -5.6 34 34 A E H > S+ 0 0 92 -4,-0.4 4,-2.9 -5,-0.3 5,-0.4 0.762 99.9 68.8 -87.1 -28.7 -2.1 -3.3 -3.3 35 35 A E H X S+ 0 0 102 -4,-2.1 4,-0.6 1,-0.2 -2,-0.2 0.827 106.7 40.9 -58.8 -32.5 0.7 -4.0 -5.8 36 36 A V H X S+ 0 0 86 -4,-0.9 4,-1.8 2,-0.2 -1,-0.2 0.788 115.6 50.8 -85.5 -31.3 2.0 -0.5 -5.2 37 37 A M H < S+ 0 0 78 -4,-0.7 5,-0.4 2,-0.2 -2,-0.2 0.969 111.7 44.1 -70.4 -55.7 1.3 -0.5 -1.4 38 38 A L H >X>S+ 0 0 77 -4,-2.9 4,-0.9 1,-0.2 5,-0.8 0.812 115.0 52.6 -59.3 -30.4 3.1 -3.8 -0.6 39 39 A E H 3<5S+ 0 0 137 -4,-0.6 2,-0.5 -5,-0.4 -1,-0.2 0.889 117.4 35.8 -72.9 -40.9 5.9 -2.6 -2.9 40 40 A T T 3<5S+ 0 0 100 -4,-1.8 -1,-0.3 2,-0.1 -2,-0.1 -0.606 125.0 33.5-114.6 70.0 6.3 0.7 -1.1 41 41 A Y T <45S+ 0 0 169 -3,-0.5 3,-0.3 -2,-0.5 -3,-0.2 0.053 123.1 31.4-178.5 -50.4 5.6 -0.2 2.5 42 42 A Q T <5S+ 0 0 145 -4,-0.9 2,-0.4 -5,-0.4 -3,-0.1 0.692 112.2 62.4 -98.3 -25.5 6.8 -3.7 3.4 43 43 A N S