==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 24-FEB-04 1VB7 . COMPND 2 MOLECULE: PDZ AND LIM DOMAIN 2; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR R.HATTA,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA,RIKEN STRUCTURAL . 94 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6304.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 61.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 24 25.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 11.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 10 10.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 3 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 133 0, 0.0 2,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 134.6 -0.2 24.8 14.1 2 2 A S - 0 0 130 0, 0.0 2,-0.3 0, 0.0 0, 0.0 -0.240 360.0-176.3 -78.5 170.9 -2.4 23.5 11.4 3 3 A S - 0 0 116 1,-0.1 3,-0.1 -2,-0.0 0, 0.0 -0.963 20.6-163.5-166.7 152.4 -1.1 21.6 8.3 4 4 A G + 0 0 60 -2,-0.3 2,-2.7 1,-0.1 3,-0.2 0.770 29.7 145.1-102.9 -85.8 -2.3 20.0 5.1 5 5 A S - 0 0 112 1,-0.2 -1,-0.1 3,-0.0 3,-0.0 -0.378 45.8-149.0 77.0 -62.3 0.0 17.5 3.5 6 6 A S + 0 0 81 -2,-2.7 -1,-0.2 -3,-0.1 82,-0.1 0.937 59.5 60.4 58.8 97.4 -2.9 15.4 2.3 7 7 A G - 0 0 23 80,-0.5 2,-0.3 -3,-0.2 79,-0.2 0.095 62.1-146.3 123.0 125.5 -1.7 11.8 2.2 8 8 A L E -A 85 0A 78 77,-2.2 77,-3.8 -2,-0.1 2,-0.3 -0.827 11.6-135.4-117.7 156.8 -0.4 9.4 4.8 9 9 A T E -A 84 0A 69 -2,-0.3 2,-0.3 75,-0.3 75,-0.2 -0.706 12.9-156.0-109.3 161.6 2.1 6.6 4.6 10 10 A V E -A 83 0A 2 73,-1.5 73,-1.9 -2,-0.3 2,-0.5 -0.946 11.7-144.3-136.1 155.7 2.0 3.1 5.9 11 11 A D E -A 82 0A 102 -2,-0.3 71,-0.2 71,-0.2 2,-0.1 -0.837 21.6-165.1-124.8 91.7 4.7 0.5 6.9 12 12 A V E -A 81 0A 0 69,-2.3 69,-1.9 -2,-0.5 2,-0.2 -0.354 18.7-119.9 -73.3 155.7 3.5 -3.0 6.0 13 13 A A - 0 0 38 67,-0.2 29,-0.1 5,-0.2 30,-0.1 -0.477 44.9 -28.6 -93.0 166.5 5.3 -6.0 7.5 14 14 A G S S- 0 0 20 -2,-0.2 2,-0.2 28,-0.1 64,-0.1 -0.820 71.5 -22.1-148.6-174.2 7.0 -8.8 5.6 15 15 A P S S- 0 0 108 0, 0.0 63,-0.1 0, 0.0 -2,-0.1 0.627 89.7 -51.6 -75.0-167.8 8.1 -10.7 4.0 16 16 A A S S+ 0 0 50 59,-0.2 2,-0.2 -2,-0.2 -2,-0.1 -0.137 97.8 67.9 -63.3 164.2 5.2 -11.5 1.6 17 17 A P - 0 0 98 0, 0.0 25,-0.0 0, 0.0 58,-0.0 0.630 55.1-167.7 -74.9 177.4 2.5 -12.1 1.3 18 18 A W - 0 0 14 2,-0.2 24,-1.4 -2,-0.2 25,-1.2 0.885 31.9-126.4 -91.1 -51.6 1.1 -8.9 2.6 19 19 A G S S+ 0 0 19 1,-0.4 19,-3.4 23,-0.2 2,-0.3 0.665 71.3 98.3 108.1 28.1 -2.5 -9.9 2.9 20 20 A F B -F 37 0B 20 17,-0.2 -1,-0.4 23,-0.1 17,-0.2 -0.983 54.4-145.8-144.6 153.4 -4.1 -7.2 0.9 21 21 A R - 0 0 177 15,-2.1 2,-0.3 -2,-0.3 14,-0.2 -0.631 10.4-158.3-113.6 172.8 -5.5 -6.7 -2.6 22 22 A I - 0 0 8 12,-0.3 2,-0.3 -2,-0.2 12,-0.2 -0.884 3.2-164.1-143.7 172.6 -5.6 -3.8 -5.1 23 23 A S E +B 33 0A 56 10,-1.5 10,-1.1 -2,-0.3 2,-0.0 -0.901 50.4 25.1-150.9 176.3 -7.5 -2.7 -8.1 24 24 A G E + 0 0 10 -2,-0.3 3,-0.2 8,-0.2 8,-0.2 -0.347 59.2 163.4 64.9-142.0 -7.4 -0.2 -11.0 25 25 A G E >>> -B 30 0A 0 5,-2.0 5,-2.1 1,-0.2 4,-1.0 -0.273 62.0 -59.3 110.5 163.0 -4.0 1.0 -12.1 26 26 A R T 345S+ 0 0 111 39,-2.6 3,-0.4 1,-0.3 40,-0.2 0.806 134.2 61.5 -45.7 -33.4 -2.5 2.7 -15.1 27 27 A D T 345S+ 0 0 94 38,-0.3 -1,-0.3 1,-0.3 -2,-0.1 0.945 114.5 30.7 -59.6 -50.9 -3.8 -0.3 -17.0 28 28 A F T <45S- 0 0 130 -3,-0.9 -1,-0.3 2,-0.2 -2,-0.2 0.320 112.2-119.9 -89.6 6.3 -7.4 0.5 -16.0 29 29 A H T <5S+ 0 0 152 -4,-1.0 -3,-0.3 -3,-0.4 -2,-0.1 0.806 78.6 116.9 58.5 30.1 -6.5 4.2 -15.9 30 30 A T E - 0 0 75 -19,-3.4 3,-1.0 -2,-0.3 6,-0.6 -0.226 31.1-125.7 -48.7 121.6 -6.7 -9.8 5.2 39 39 A E T 3 S+ 0 0 146 1,-0.3 3,-0.1 5,-0.1 -1,-0.1 -0.220 88.9 14.6 -68.5 161.7 -7.6 -9.4 8.9 40 40 A R T 3 S+ 0 0 231 1,-0.1 -1,-0.3 2,-0.1 -2,-0.1 0.780 109.4 119.2 41.0 31.6 -5.0 -10.2 11.6 41 41 A G S < S- 0 0 24 -3,-1.0 4,-0.3 -22,-0.1 -22,-0.2 0.011 81.8 -87.9-101.8-151.4 -2.6 -10.0 8.7 42 42 A K S > S+ 0 0 81 -24,-1.4 4,-1.9 2,-0.1 -23,-0.2 0.923 118.5 49.2 -88.5 -58.9 0.4 -7.8 7.9 43 43 A A H >>>S+ 0 0 0 -25,-1.2 3,-1.3 1,-0.3 4,-1.1 0.944 113.3 46.1 -43.3 -70.6 -1.3 -4.9 6.1 44 44 A E H 345S+ 0 0 82 -6,-0.6 -1,-0.3 1,-0.3 -2,-0.1 0.848 106.1 63.4 -41.2 -43.2 -3.9 -4.4 8.8 45 45 A A H 345S+ 0 0 64 -4,-0.3 -1,-0.3 2,-0.1 -2,-0.2 0.923 112.7 34.0 -48.4 -52.0 -1.1 -4.7 11.3 46 46 A A H <<5S- 0 0 32 -4,-1.9 -2,-0.2 -3,-1.3 -3,-0.1 0.989 128.1 -82.8 -66.6 -81.6 0.4 -1.6 9.8 47 47 A D T <5S+ 0 0 66 -4,-1.1 2,-0.5 -5,-0.1 -3,-0.2 0.140 73.3 144.6 173.9 40.7 -2.5 0.6 8.8 48 48 A L < + 0 0 2 -5,-0.9 -2,-0.0 -6,-0.1 -38,-0.0 -0.829 20.8 176.3 -98.6 130.5 -3.7 -0.6 5.4 49 49 A R > - 0 0 131 -2,-0.5 3,-1.0 -6,-0.1 2,-0.4 -0.888 37.4 -90.6-131.0 161.2 -7.4 -0.6 4.6 50 50 A P T 3 S+ 0 0 71 0, 0.0 -15,-0.2 0, 0.0 3,-0.1 -0.582 110.8 26.9 -75.0 125.3 -9.6 -1.4 1.6 51 51 A G T 3 S+ 0 0 38 -17,-0.7 -16,-0.1 1,-0.4 -29,-0.0 -0.072 80.4 139.5 115.8 -30.1 -10.2 1.7 -0.5 52 52 A D < - 0 0 4 -3,-1.0 -18,-1.0 -19,-0.1 2,-0.8 -0.227 54.1-129.1 -49.6 127.3 -7.1 3.5 0.4 53 53 A I E -CD 33 86A 63 33,-0.7 33,-3.1 -20,-0.2 2,-0.7 -0.758 15.8-135.6 -87.3 112.4 -5.7 5.1 -2.7 54 54 A I E +CD 32 85A 3 -22,-3.3 -22,-0.5 -2,-0.8 31,-0.3 -0.570 25.5 178.5 -71.0 110.6 -2.1 4.2 -3.2 55 55 A V E - 0 0 29 29,-4.0 7,-4.2 -2,-0.7 8,-0.5 0.920 67.0 -4.7 -77.9 -48.1 -0.3 7.4 -4.1 56 56 A A E -ED 61 84A 3 28,-1.1 28,-0.7 5,-0.3 2,-0.4 -0.802 64.8-123.4-137.5 177.6 3.1 5.9 -4.3 57 57 A I E > S-ED 60 83A 6 3,-2.4 3,-0.6 -2,-0.3 26,-0.2 -0.892 90.4 -27.0-133.0 101.6 4.9 2.6 -3.6 58 58 A N T 3 S- 0 0 70 24,-2.3 25,-0.2 -2,-0.4 3,-0.1 0.544 135.3 -40.6 71.8 6.5 7.8 2.7 -1.2 59 59 A G T 3 S+ 0 0 69 1,-0.3 2,-0.6 23,-0.2 -1,-0.3 0.404 116.5 117.5 117.7 5.6 8.1 6.3 -2.3 60 60 A Q E < S-E 57 0A 114 -3,-0.6 -3,-2.4 1,-0.0 -1,-0.3 -0.926 73.5-107.7-109.8 117.6 7.5 5.8 -6.0 61 61 A S E -E 56 0A 75 -2,-0.6 -5,-0.3 -5,-0.3 -6,-0.1 -0.001 26.9-168.7 -38.8 140.2 4.5 7.5 -7.5 62 62 A A > + 0 0 1 -7,-4.2 3,-1.0 22,-0.1 -30,-0.4 0.193 60.1 104.2-119.2 10.1 1.7 4.9 -8.3 63 63 A E T 3 S+ 0 0 141 -8,-0.5 2,-0.3 1,-0.3 -1,-0.1 0.877 92.5 33.4 -58.9 -39.9 -0.4 7.3 -10.3 64 64 A N T 3 S+ 0 0 98 -39,-0.1 2,-0.5 2,-0.0 -1,-0.3 -0.554 90.4 130.7-116.9 63.8 0.8 5.6 -13.4 65 65 A M < - 0 0 6 -3,-1.0 -39,-2.6 -2,-0.3 -38,-0.3 -0.976 51.7-132.0-123.1 123.0 1.2 2.1 -12.2 66 66 A L >>> - 0 0 58 -2,-0.5 4,-2.6 -41,-0.3 3,-0.6 -0.339 29.3-110.5 -68.6 150.9 -0.2 -0.9 -14.1 67 67 A H H 3>5S+ 0 0 58 1,-0.3 4,-0.6 2,-0.2 -1,-0.1 0.742 127.3 44.0 -52.6 -23.1 -2.2 -3.5 -12.1 68 68 A A H 3>5S+ 0 0 70 2,-0.1 4,-2.2 3,-0.1 -1,-0.3 0.718 111.1 54.6 -92.4 -27.1 0.8 -5.7 -12.8 69 69 A E H <>5S+ 0 0 78 -3,-0.6 4,-3.3 2,-0.2 5,-0.3 0.977 111.6 40.6 -69.5 -58.7 3.3 -2.9 -12.1 70 70 A A H X5S+ 0 0 0 -4,-2.6 4,-2.6 1,-0.2 5,-0.3 0.875 116.2 53.8 -57.1 -39.4 2.1 -2.1 -8.6 71 71 A Q H X< S+ 0 0 0 -4,-2.6 3,-2.4 -5,-0.3 -1,-0.2 0.976 112.8 49.7 -55.1 -62.5 5.0 -4.3 -4.2 75 75 A R H 3< S+ 0 0 169 -4,-2.8 -1,-0.2 1,-0.3 -2,-0.2 0.860 112.4 50.0 -43.9 -43.4 5.8 -8.0 -4.4 76 76 A Q T 3< S+ 0 0 163 -4,-3.9 2,-0.6 -5,-0.1 -1,-0.3 -0.124 90.2 113.4 -89.7 36.5 9.4 -7.0 -5.0 77 77 A S < - 0 0 10 -3,-2.4 -61,-0.1 -5,-0.1 4,-0.1 -0.950 60.5-140.8-115.2 117.7 9.2 -4.7 -2.0 78 78 A A - 0 0 80 -2,-0.6 -2,-0.0 1,-0.1 0, 0.0 -0.139 43.9 -53.7 -67.2 168.4 11.3 -5.6 1.0 79 79 A S S S+ 0 0 68 2,-0.1 2,-0.2 -68,-0.0 -66,-0.1 -0.793 120.1 39.8-101.2 141.6 10.0 -5.1 4.6 80 80 A P S S- 0 0 75 0, 0.0 2,-0.7 0, 0.0 -67,-0.2 0.576 84.3-154.3 -75.0 161.6 8.9 -2.9 5.8 81 81 A L E -A 12 0A 0 -69,-1.9 -69,-2.3 -2,-0.2 2,-0.3 -0.892 7.1-148.3-105.7 108.1 7.0 -1.9 2.7 82 82 A R E +A 11 0A 133 -2,-0.7 -24,-2.3 -71,-0.2 2,-0.4 -0.579 19.1 179.0 -77.2 133.0 6.3 1.8 2.6 83 83 A L E -AD 10 57A 0 -73,-1.9 -73,-1.5 -2,-0.3 2,-0.7 -0.964 21.2-143.8-140.6 119.2 3.0 2.8 0.9 84 84 A Q E -AD 9 56A 59 -28,-0.7 -29,-4.0 -2,-0.4 -28,-1.1 -0.741 20.2-164.4 -86.2 114.9 1.7 6.3 0.5 85 85 A L E -AD 8 54A 0 -77,-3.8 -77,-2.2 -2,-0.7 2,-0.9 -0.801 16.9-133.4-101.7 141.7 -2.0 6.4 0.8 86 86 A D E + D 0 53A 68 -33,-3.1 2,-0.7 -2,-0.4 -33,-0.7 -0.822 27.9 178.0 -97.4 101.4 -4.1 9.3 -0.3 87 87 A R + 0 0 109 -2,-0.9 -80,-0.5 -35,-0.1 2,-0.3 -0.893 13.0 155.0-109.0 104.7 -6.6 10.1 2.5 88 88 A S + 0 0 102 -2,-0.7 2,-0.3 -82,-0.1 -2,-0.0 -0.703 16.8 149.9-130.7 79.5 -8.7 13.1 1.7 89 89 A S - 0 0 118 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.802 27.7-151.0-112.0 153.8 -12.0 12.8 3.6 90 90 A G - 0 0 63 -2,-0.3 2,-0.1 1,-0.0 -2,-0.0 -0.871 24.1 -99.9-123.7 156.9 -14.2 15.6 5.0 91 91 A P + 0 0 137 0, 0.0 2,-0.3 0, 0.0 -1,-0.0 -0.460 43.1 174.6 -75.0 145.1 -16.7 15.9 7.9 92 92 A S - 0 0 121 -2,-0.1 2,-0.3 2,-0.0 0, 0.0 -0.983 11.2-179.0-149.5 155.2 -20.4 15.5 7.3 93 93 A S 0 0 130 -2,-0.3 0, 0.0 0, 0.0 0, 0.0 -0.978 360.0 360.0-157.6 144.7 -23.6 15.3 9.2 94 94 A G 0 0 129 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.988 360.0 360.0 156.5 360.0 -27.3 14.9 8.5